Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 0.0e+00 1242.3 705 100.0
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 0.0e+00 1145.6 701 91.0
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 4.8e-312 1074.7 701 86.2
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 1.5e-308 1062.4 701 87.4
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 4.2e-306 1054.3 701 86.7
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 1.0e-304 1049.7 701 87.3
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 2.9e-275 951.8 706 75.2
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 5.8e-199 698.4 704 63.1
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 7.6e-199 698.0 704 59.5
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 5.3e-192 675.2 704 59.1
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.6e-188 663.7 704 61.1
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 7.9e-188 661.4 705 60.6
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 7.4e-186 654.8 702 60.5
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 1.3e-182 644.0 704 61.2
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.7e-182 643.7 706 58.9
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 2.9e-182 642.9 702 53.1
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.4e-181 640.6 705 59.9
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 1.6e-180 637.1 710 56.6
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 4.6e-180 635.6 706 59.3
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 7.9e-180 634.8 702 56.4
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 7.6e-175 618.2 705 57.7
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.0e-174 617.8 707 58.8
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 5.0e-174 615.5 702 57.7
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 3.2e-173 612.8 703 55.6
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 4.2e-173 612.5 704 58.1
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 2.3e-171 606.7 695 60.6
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 5.7e-170 602.1 711 58.6
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 1.6e-169 600.5 703 55.8
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 3.7e-169 599.4 765 44.3
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 6.3e-169 598.6 704 56.8
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.1e-168 595.9 704 56.5
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 5.3e-168 595.5 706 56.4
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 2.0e-167 593.6 706 56.1
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 2.0e-167 593.6 704 56.5
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 6.5e-166 588.6 632 62.3
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 8.5e-166 588.2 706 55.9
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 1.4e-165 587.4 703 54.8
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.4e-165 587.4 706 55.8
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 6.1e-164 582.0 705 54.6
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.4e-163 580.9 706 50.7
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 1.8e-163 580.5 706 55.8
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 2.3e-163 580.1 702 55.6
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 2.3e-163 580.1 708 49.4
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 3.0e-163 579.7 703 55.0
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 3.9e-163 579.3 721 53.7
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 1.3e-161 574.3 703 54.8
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 1.4e-160 570.9 702 56.6
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 2.6e-159 566.6 705 55.2
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 1.7e-158 563.9 633 60.3
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 1.1e-157 561.2 705 52.5
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 1.1e-157 561.2 710 56.1
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 1.9e-157 560.5 708 54.1
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 5.5e-157 558.9 715 55.2
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 9.4e-157 558.1 671 57.5
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 9.4e-157 558.1 704 54.7
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 2.7e-156 556.6 722 54.8
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 3.6e-156 556.2 708 48.7
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.4e-155 554.3 756 46.7
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 1.4e-155 554.3 705 53.5
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 3.9e-155 552.7 706 55.8
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 8.8e-155 551.6 708 54.0
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 2.6e-154 550.1 735 52.1
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 9.7e-154 548.1 705 49.9
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 1.3e-153 547.7 713 50.8
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 2.8e-153 546.6 706 54.8
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 6.3e-153 545.4 704 54.4
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 6.3e-153 545.4 703 53.8
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.1e-152 544.7 728 50.3
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 1.0e-150 538.1 708 53.2
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.2e-148 531.2 648 58.8
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 2.7e-148 530.0 724 51.0
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 1.8e-147 527.3 706 52.8
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 5.5e-141 505.8 736 50.4
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 1.6e-140 504.2 704 52.8
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 4.7e-140 502.7 703 53.1
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 6.1e-140 502.3 705 49.5
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 5.2e-139 499.2 704 51.3
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.6e-138 496.9 712 50.4
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 3.4e-138 496.5 705 50.5
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 9.8e-138 495.0 708 49.7
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.7e-137 494.2 704 51.4
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 2.2e-137 493.8 741 47.2
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 2.2e-137 493.8 706 51.3
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 4.8e-137 492.7 706 50.7
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 1.8e-136 490.7 704 51.1
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 2.4e-136 490.3 704 50.9
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 3.1e-136 490.0 712 51.7
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 1.6e-135 487.6 706 50.6
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 3.5e-135 486.5 704 52.6
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 3.5e-135 486.5 633 54.5
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 7.7e-135 485.3 704 50.6
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 1.3e-134 484.6 701 51.4
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 1.7e-134 484.2 704 50.4
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 1.7e-134 484.2 516 61.2
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 2.9e-134 483.4 704 50.6
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 5.5e-133 479.2 704 50.7
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 1.8e-131 474.2 705 51.2
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.5e-127 459.9 520 50.4
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 3.8e-126 456.4 704 50.6
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.0e-120 435.6 516 56.0
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.2e-119 434.9 707 38.3
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 2.0e-119 434.1 704 40.8
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 4.6e-119 433.0 707 43.7
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 7.8e-119 432.2 706 40.7
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 3.0e-118 430.3 709 41.2
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.7e-113 413.3 724 45.6
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 4.9e-113 412.9 708 40.4
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 1.2e-111 408.3 477 58.9
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 3.9e-110 403.3 706 47.0
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.6e-108 397.9 534 43.3
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 8.1e-108 395.6 708 38.8
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 1.4e-107 394.8 578 50.7
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 4.6e-103 379.8 726 40.4
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 7.8e-103 379.0 631 50.4
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 1.6e-100 371.3 526 50.0
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 8.4e-97 359.0 733 36.6
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 3.9e-86 323.6 530 44.0
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 7.6e-82 309.3 728 44.1
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 3.3e-77 293.9 425 53.2
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.6e-76 291.6 312 55.1
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 2.4e-75 287.7 470 43.0
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.4e-75 287.7 540 37.4
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-73 282.0 480 37.5
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.0e-70 272.3 483 36.0
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 1.4e-64 251.9 258 69.0
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 3.0e-62 244.2 255 72.9
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 7.4e-61 239.6 355 40.3
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 2.2e-57 228.0 290 53.1
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 9.4e-56 222.6 249 57.4
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.4e-54 218.8 433 35.1
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 2.3e-46 191.4 208 59.1
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 1.4e-43 182.2 123 72.4
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 2.6e-42 177.9 202 48.0
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 8.0e-39 166.4 711 29.4
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 2.3e-38 164.9 242 40.1
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 3.0e-38 164.5 123 66.7
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 3.8e-33 147.5 123 62.6
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 6.5e-33 146.7 151 64.2
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 2.1e-31 141.7 133 60.2
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 4.7e-31 140.6 519 30.1
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 2.3e-30 138.3 140 67.1
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 4.0e-30 137.5 123 56.1
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 5.2e-30 137.1 259 42.1
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 1.5e-29 135.6 109 59.6
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 7.7e-26 123.2 132 49.2
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.2e-25 121.7 98 65.3
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-24 119.4 96 65.6
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 1.9e-24 118.6 119 54.6
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 1.9e-24 118.6 123 48.8
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 3.1e-19 101.3 71 66.2
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 5.9e-18 97.1 145 39.3
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.3e-16 91.3 97 48.5
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 3.3e-16 91.3 163 36.8
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.5e-16 90.5 95 49.5
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.1e-15 88.6 96 44.8
CAN.G475.12 Capsicum annuum HOM05D003682 ORTHO05D004224 2.1e-15 88.6 53 79.2
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.8e-15 88.2 95 46.3
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.8e-15 88.2 95 46.3
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 2.3e-14 85.1 282 27.3
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.2e-14 84.0 95 48.4
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.9e-14 83.2 63 66.7
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 1.2e-13 82.8 74 59.5
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.8e-13 79.7 60 66.7
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.8e-13 79.7 60 66.7
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.8e-13 79.7 63 63.5
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.7e-12 79.0 63 63.5
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.2e-12 78.6 95 46.3
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.2e-12 78.6 63 63.5
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.3e-12 77.0 95 45.3
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.4e-11 75.9 95 44.2
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 1.8e-11 75.5 125 38.4
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 3.1e-11 74.7 266 25.2
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 3.1e-11 74.7 259 27.8
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 3.5e-10 71.2 45 64.4
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 1.7e-09 68.9 93 45.2
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 8.0e-07 60.1 137 38.7
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 1.4e-06 59.3 28 89.3
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 1.4e-06 59.3 145 35.2
HanXRQChr11g0332681 Helianthus annuus HOM05D003682 ORTHO05D004224 8.9e-06 56.6 54 51.9


User provided reference genes

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