Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006025g0010 Nicotiana tabacum HOM05D002653 ORTHO05D002623 0.0e+00 5109.3 2580 100.0
Sopen11g020620 Solanum pennellii HOM05D002653 ORTHO05D002623 0.0e+00 4024.2 2915 73.0
CAN.G690.1 Capsicum annuum HOM05D002653 ORTHO05D002623 0.0e+00 3924.4 2916 71.4
Nitab4.5_0004202g0020 Nicotiana tabacum HOM05D002653 ORTHO05D002623 0.0e+00 3703.3 2137 89.6
Solyc11g045160.3 Solanum lycopersicum HOM05D002653 ORTHO05D002623 0.0e+00 3223.0 2138 77.9
Peaxi162Scf00126g00051 Petunia axillaris HOM05D002653 ORTHO05D002623 0.0e+00 3211.8 2256 74.5
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 0.0e+00 2400.9 2987 46.8
Lj4C825G3 Lonicera japonica HOM05D002653 ORTHO05D002623 0.0e+00 2217.2 2917 45.4
vmacro03486 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 0.0e+00 2122.4 3090 41.8
CSS0041142 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 0.0e+00 2111.3 2669 45.6
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 0.0e+00 2107.4 2973 42.0
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 0.0e+00 2102.8 3101 41.5
QL04p064964 Quercus lobata HOM05D002653 ORTHO05D002623 0.0e+00 2102.0 2975 42.2
Ciclev10010886m.g Citrus clementina HOM05D002653 ORTHO05D002623 0.0e+00 2099.7 2986 41.6
Manes.11G165700 Manihot esculenta HOM05D002653 ORTHO05D002623 0.0e+00 2052.3 2922 41.9
TWI34G1636 Tripterygium wilfordii HOM05D002653 ORTHO05D002623 0.0e+00 2050.4 2968 41.1
Thecc.01G150000 Theobroma cacao HOM05D002653 ORTHO05D002623 0.0e+00 2043.5 2944 41.6
Manes.09G076300 Manihot esculenta HOM05D002653 ORTHO05D002623 0.0e+00 2043.1 2925 42.0
Cc11_g00280 Coffea canephora HOM05D002653 ORTHO05D002623 0.0e+00 2041.5 2865 42.4
Duzib114G0204 Durio zibethinus HOM05D002653 ORTHO05D002623 0.0e+00 2034.2 2937 41.6
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 0.0e+00 2030.8 2974 41.4
Potri.001G455600 Populus trichocarpa HOM05D002653 ORTHO05D002623 0.0e+00 2001.5 2943 41.7
RcHm_v2.0_Chr2g0148311 Rosa chinensis HOM05D002653 ORTHO05D002623 0.0e+00 1994.2 2963 40.7
Gohir.A05G394600 Gossypium hirsutum HOM05D002653 ORTHO05D002623 0.0e+00 1988.8 2957 40.9
CiPaw.06G000600 Carya illinoinensis HOM05D002653 ORTHO05D002623 0.0e+00 1988.0 2921 40.8
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 0.0e+00 1984.9 2905 41.9
Gorai.012G024100 Gossypium raimondii HOM05D002653 ORTHO05D002623 0.0e+00 1975.3 2937 40.8
Prupe.3G028500 Prunus persica HOM05D002653 ORTHO05D002623 0.0e+00 1972.6 2965 40.5
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 0.0e+00 1971.8 2878 42.2
Sabra16G0308200 Salix brachista HOM05D002653 ORTHO05D002623 0.0e+00 1970.7 2961 41.0
MSTRG.8096 Avicennia marina HOM05D002653 ORTHO05D002623 0.0e+00 1967.6 2910 41.3
MD17G1156800 Malus domestica HOM05D002653 ORTHO05D002623 0.0e+00 1967.2 2973 40.4
SalBow1G2769 Salvia bowleyana HOM05D002653 ORTHO05D002623 0.0e+00 1950.6 2993 40.2
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 0.0e+00 1949.5 2958 40.2
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 0.0e+00 1948.3 2938 40.5
HanXRQChr07g0186761 Helianthus annuus HOM05D002653 ORTHO05D002623 0.0e+00 1945.6 2942 41.0
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 0.0e+00 1940.6 2950 40.1
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 0.0e+00 1939.1 2950 40.1
SalBow1G3632 Salvia bowleyana HOM05D002653 ORTHO05D002623 0.0e+00 1938.7 2973 40.1
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 0.0e+00 1932.5 2945 40.1
GSVIVG01019366001 Vitis vinifera HOM05D002653 ORTHO05D002623 0.0e+00 1926.0 2910 40.8
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 0.0e+00 1915.2 2906 39.6
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 0.0e+00 1833.5 2937 38.8
PGR044G0026 Punica granatum HOM05D002653 ORTHO05D002623 0.0e+00 1823.1 2920 38.9
Lalb_Chr01g0009381 Lupinus albus HOM05D002653 ORTHO05D002623 0.0e+00 1805.8 2947 38.0
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 0.0e+00 1805.0 2967 38.8
SGA_v2.0_scaffold131G34416 Striga asiatica HOM05D002653 ORTHO05D002623 0.0e+00 1799.6 2801 40.6
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 0.0e+00 1790.0 2964 37.7
Sed0003631 Sechium edule HOM05D002653 ORTHO05D002623 0.0e+00 1778.5 2891 38.3
TPR.G8155 Trifolium pratense HOM05D002653 ORTHO05D002623 0.0e+00 1776.1 2955 37.7
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 0.0e+00 1769.6 2987 37.3
CsaV3_1G044330 Cucumis sativus L. HOM05D002653 ORTHO05D002623 0.0e+00 1753.8 2934 37.9
Psat0s3513g0080 Pisum sativum HOM05D002653 ORTHO05D002623 0.0e+00 1753.8 2947 37.7
ClCG03G010410 Citrullus lanatus HOM05D002653 ORTHO05D002623 0.0e+00 1744.9 2950 37.8
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 0.0e+00 1737.2 2984 37.5
Medtr2g007250 Medicago truncatula HOM05D002653 ORTHO05D002623 0.0e+00 1736.5 2935 37.4
LjContig00141g0016117 Lotus japonicus HOM05D002653 ORTHO05D002623 0.0e+00 1720.3 2941 37.5
Lj4g0020533 Lotus japonicus HOM05D002653 ORTHO05D002623 0.0e+00 1709.1 2951 37.2
TAR624G1146 Trochodendron aralioides HOM05D002653 ORTHO05D002623 0.0e+00 1699.9 2221 44.8
arahy.Tifrunner.gnm1.ann1.GW217K Arachis hypogaea HOM05D002653 ORTHO05D002623 0.0e+00 1684.8 2918 37.2
C07p42990 Brassica napus HOM05D002653 ORTHO05D002623 0.0e+00 1653.3 2944 36.2
AT5G24740 Arabidopsis thaliana HOM05D002653 ORTHO05D002623 0.0e+00 1647.5 2919 37.0
AL6G36330 Arabidopsis lyrata HOM05D002653 ORTHO05D002623 0.0e+00 1646.3 2952 36.4
A06p35550 Brassica napus HOM05D002653 ORTHO05D002623 0.0e+00 1645.9 2943 36.2
THA.LOC104814962 Tarenaya hassleriana HOM05D002653 ORTHO05D002623 0.0e+00 1638.2 2950 36.6
BcaNung01253 Brassica carinata HOM05D002653 ORTHO05D002623 0.0e+00 1637.1 2904 36.6
BraA06t26480Z Brassica rapa HOM05D002653 ORTHO05D002623 0.0e+00 1628.2 2963 35.9
Carub.0006s2259 Capsella rubella HOM05D002653 ORTHO05D002623 0.0e+00 1626.7 2954 36.3
Thhalv10003500m.g Eutrema salsugineum HOM05D002653 ORTHO05D002623 0.0e+00 1619.8 2940 36.4
CARHR188760 Cardamine hirsuta HOM05D002653 ORTHO05D002623 0.0e+00 1617.4 2950 36.5
Aqoxy2G01525 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 0.0e+00 1614.7 2965 36.0
BolC7t44828H Brassica oleracea HOM05D002653 ORTHO05D002623 0.0e+00 1611.7 2991 35.5
AUR62013467 Chenopodium quinoa HOM05D002653 ORTHO05D002623 0.0e+00 1584.3 2942 36.6
Aa31LG11G3960 Aethionema arabicum HOM05D002653 ORTHO05D002623 0.0e+00 1567.0 2992 36.1
Haze_24505 Corylus avellana HOM05D002653 ORTHO05D002623 0.0e+00 1553.1 2413 39.3
Sp2g22690 Schrenkiella parvula HOM05D002653 ORTHO05D002623 0.0e+00 1544.6 2622 37.3
Phvul.002G328600 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 0.0e+00 1506.9 2259 40.4
FAN09G4442 Fragaria x ananassa HOM05D002653 ORTHO05D002623 0.0e+00 1483.0 2607 36.2
MBI12_g09298_MAGBIO Magnolia biondii HOM05D002653 ORTHO05D002623 0.0e+00 1468.8 2530 36.4
ATR1155G033 Amborella trichopoda HOM05D002653 ORTHO05D002623 0.0e+00 1459.5 3025 33.2
Atru.chr8.1038_Atru.chr8.1039 Acer truncatum HOM05D002653 ORTHO05D002623 0.0e+00 1456.8 1706 48.5
Eucgr.K01355 Eucalyptus grandis HOM05D002653 ORTHO05D002623 0.0e+00 1411.0 2452 36.7
Gohir.D04G020351 Gossypium hirsutum HOM05D002653 ORTHO05D002623 0.0e+00 1387.5 1644 47.6
arahy.Tifrunner.gnm1.ann1.21MRAZ Arachis hypogaea HOM05D002653 ORTHO05D002623 0.0e+00 1296.2 1709 44.1
Zm00001eb260890 Zea mays HOM05D002653 ORTHO05D002623 0.0e+00 1267.7 2828 31.5
Migut.L00839 Erythranthe guttata HOM05D002653 ORTHO05D002623 0.0e+00 1255.0 1981 40.6
VMungo0251G0195 Vigna mungo HOM05D002653 ORTHO05D002623 0.0e+00 1112.8 2039 35.6
MELO3C010033.2 Cucumis melo HOM05D002653 ORTHO05D002623 0.0e+00 1082.0 2007 35.3
unitig_8.g3108 Utricularia gibba HOM05D002653 ORTHO05D002623 5.6e-292 1009.2 1461 43.0
Migut.L00525 Erythranthe guttata HOM05D002653 ORTHO05D002623 4.6e-286 989.6 1156 48.3
Migut.L00786 Erythranthe guttata HOM05D002653 ORTHO05D002623 2.4e-274 950.7 1447 42.2
AUR62026805 Chenopodium quinoa HOM05D002653 ORTHO05D002623 6.3e-267 926.0 1988 33.1
Cpa.g.sc119.1 Carica papaya HOM05D002653 ORTHO05D002623 1.2e-265 921.8 1572 36.8
Peaxi162Scf00126g00524 Petunia axillaris HOM05D002653 ORTHO05D002623 2.5e-247 860.9 497 88.1
Cpa.g.sc119.2 Carica papaya HOM05D002653 ORTHO05D002623 2.1e-230 804.7 1209 40.9
Mapoly0009s0011 Marchantia polymorpha HOM05D002653 ORTHO05D002623 1.8e-221 775.0 2513 27.4
Pp3c15_25690 Physcomitrium patens HOM05D002653 ORTHO05D002623 2.2e-211 741.5 2357 28.0
Oeu013191.1 Olea europaea HOM05D002653 ORTHO05D002623 4.3e-199 700.7 1031 41.5
SMO353G0260 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 6.2e-198 696.8 1691 29.9
CSS0047039 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 1.9e-178 632.1 431 73.8
HPP92_001355 Vanilla planifolia HOM05D002653 ORTHO05D002623 9.3e-170 603.2 739 45.7
Phvul.002G328704 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 7.9e-161 573.5 480 61.9
VMungo0251G2737 Vigna mungo HOM05D002653 ORTHO05D002623 1.5e-159 569.3 480 61.2
Ca_27667_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 5.9e-156 557.4 781 40.7
AUR62007656 Chenopodium quinoa HOM05D002653 ORTHO05D002623 1.8e-152 545.8 492 59.1
MD09G1170300 Malus domestica HOM05D002653 ORTHO05D002623 2.4e-141 508.8 473 57.3
COL.COLO4_33575 Corchorus olitorius HOM05D002653 ORTHO05D002623 7.0e-141 507.3 374 68.7
MELO3C010025.2 Cucumis melo HOM05D002653 ORTHO05D002623 7.0e-133 480.7 404 62.1
Atru.chr8.1040 Acer truncatum HOM05D002653 ORTHO05D002623 7.0e-125 454.1 954 32.6
SEGI_36671 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 6.8e-120 437.6 792 36.9
Ca_14756_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 1.8e-117 429.5 679 39.3
Hma1.2p1_2738F.1_g327720 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 4.7e-113 414.8 547 45.3
Nn7g38446 Nelumbo nucifera HOM05D002653 ORTHO05D002623 3.0e-112 412.1 988 31.4
PSO782G1285 Papaver somniferum HOM05D002653 ORTHO05D002623 1.5e-111 409.8 1119 28.7
HPP92_001360 Vanilla planifolia HOM05D002653 ORTHO05D002623 1.0e-107 397.1 1993 24.1
Ca_27225_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 2.3e-99 369.4 354 57.6
Gorai.012G024500 Gossypium raimondii HOM05D002653 ORTHO05D002623 1.7e-94 353.2 238 73.1
Ca_01486_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 2.2e-94 352.8 268 67.2
Os08g0116566 Oryza sativa ssp. japonica HOM05D002653 ORTHO05D002623 2.1e-92 346.3 356 51.1
Haze_24502 Corylus avellana HOM05D002653 ORTHO05D002623 9.2e-85 320.9 244 65.6
FAN05G4926 Fragaria x ananassa HOM05D002653 ORTHO05D002623 9.3e-77 294.3 243 63.0
TAR624G0800 Trochodendron aralioides HOM05D002653 ORTHO05D002623 1.5e-74 287.0 690 32.9
HPP92_001361 Vanilla planifolia HOM05D002653 ORTHO05D002623 2.1e-65 256.5 410 40.5
Hma1.2p1_2738F.1_g327710 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 2.9e-62 246.1 439 37.1
CBR_g47049 Chara braunii HOM05D002653 ORTHO05D002623 3.8e-62 245.7 925 26.1
arahy.Tifrunner.gnm1.ann1.LJ799F Arachis hypogaea HOM05D002653 ORTHO05D002623 5.5e-61 241.9 339 44.8
RcHm_v2.0_Chr5g0051461 Rosa chinensis HOM05D002653 ORTHO05D002623 1.1e-58 234.2 278 46.4
Ca_30710_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 4.3e-58 232.3 279 49.5
Ca_14757_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 2.6e-55 223.0 628 27.2
Hma1.2p1_2738F.1_g327700 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 2.6e-47 196.4 161 60.9
Aqoxy4G01176 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 5.5e-45 188.7 143 63.6
SMO302G0008 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 2.5e-37 163.3 600 26.7
Haze_24503 Corylus avellana HOM05D002653 ORTHO05D002623 9.4e-37 161.4 107 74.8
arahy.Tifrunner.gnm1.ann1.FGIJ89 Arachis hypogaea HOM05D002653 ORTHO05D002623 1.0e-35 157.9 247 39.7
Phvul.002G234304 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 1.8e-35 157.1 520 26.2
Actinidia28837 Actinidia chinensis HOM05D002653 ORTHO05D002623 5.1e-35 155.6 108 72.2
CBR_g47051 Chara braunii HOM05D002653 ORTHO05D002623 1.3e-33 151.0 638 24.0
Lsat_1_v5_gn_1_69101 Lactuca sativa HOM05D002653 ORTHO05D002623 1.2e-31 144.4 110 61.8
HPP92_000045 Vanilla planifolia HOM05D002653 ORTHO05D002623 2.6e-31 143.3 137 56.2
MELO3C010026.2 Cucumis melo HOM05D002653 ORTHO05D002623 5.0e-30 139.0 94 64.9
Gohir.D04G020301 Gossypium hirsutum HOM05D002653 ORTHO05D002623 6.5e-30 138.7 459 26.4
SEGI_29400 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 1.4e-29 137.5 675 22.7
Actinidia28775 Actinidia chinensis HOM05D002313 ORTHO05D002623 9.4e-29 134.8 106 64.2
Lsat_1_v5_gn_6_118061 Lactuca sativa HOM05D002653 ORTHO05D002623 2.1e-28 133.7 129 54.3
arahy.Tifrunner.gnm1.ann1.U4FA7I Arachis hypogaea HOM05D002653 ORTHO05D002623 2.7e-28 133.3 114 57.9
SEGI_11936 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 2.6e-23 116.7 164 40.9
Ca_09437_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 3.5e-23 116.3 95 63.2
Cfa027332 Carpinus fangiana HOM05D001092 ORTHO05D000923 8.5e-22 111.7 219 31.1
HPP92_001362 Vanilla planifolia HOM05D002653 ORTHO05D002623 2.5e-21 110.2 178 34.8
SEGI_37137 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 4.4e-18 99.4 75 62.7
PRCOL_00001171 Prasinoderma coloniale HOM05D002653 ORTHO05D002623 2.8e-17 96.7 289 26.6
HPP92_010163 Vanilla planifolia HOM05D002653 ORTHO05D002623 3.7e-17 96.3 113 50.4
Actinidia28844 Actinidia chinensis HOM05D002313 ORTHO05D002623 9.1e-16 91.7 81 59.3
Lsat_1_v5_gn_9_71520 Lactuca sativa HOM05D002653 ORTHO05D002623 2.2e-14 87.0 74 54.1
Lsat_1_v5_gn_6_59520 Lactuca sativa HOM05D002372 ORTHO05D002623 3.8e-14 86.3 72 56.9
Lsat_1_v5_gn_6_103800 Lactuca sativa HOM05D003170 ORTHO05D003611 4.2e-13 82.8 99 45.5
arahy.Tifrunner.gnm1.ann1.P3JCM3 Arachis hypogaea HOM05D002653 ORTHO05D002623 1.2e-12 81.3 93 51.6
QL02p009774 Quercus lobata HOM05D001890 ORTHO05D002623 1.6e-12 80.9 122 41.8
SMO353G0198 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 1.5e-10 74.3 313 26.5
CBR_g47048 Chara braunii HOM05D000019 ORTHO05D000353 2.0e-10 73.9 166 28.9
QL02p032103 Quercus lobata HOM05D003355 ORTHO05D002623 9.8e-10 71.6 57 63.2
CSS0037314 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 1.1e-08 68.2 146 32.9
Phvul.002G234308 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 1.4e-08 67.8 91 37.4
arahy.Tifrunner.gnm1.ann1.Y0I0AR Arachis hypogaea HOM05D002653 ORTHO05D002623 1.8e-08 67.4 60 58.3
Lsat_1_v5_gn_8_138540 Lactuca sativa HOM05D002028 ORTHO05D002474 1.8e-08 67.4 59 57.6
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 7.0e-08 65.5 91 46.2
Lsat_1_v5_gn_7_107220 Lactuca sativa HOM05D002653 ORTHO05D002623 2.7e-07 63.5 166 26.5
CARHR037730 Cardamine hirsuta HOM05D001092 ORTHO05D000923 4.5e-07 62.8 219 25.6
MELO3C029604.2 Cucumis melo HOM05D002653 ORTHO05D002623 4.5e-07 62.8 40 60.0
AUR62003914 Chenopodium quinoa HOM05D001092 ORTHO05D000923 1.7e-06 60.8 198 26.3
AUR62038227 Chenopodium quinoa HOM05D001092 ORTHO05D000923 1.7e-06 60.8 198 26.3
PRCOL_00005014 Prasinoderma coloniale HOM05D002653 ORTHO05D002623 5.0e-06 59.3 275 24.0
Actinidia10128 Actinidia chinensis HOM05D002653 ORTHO05D002623 8.5e-06 58.5 92 37.0


User provided reference genes

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