Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005909g0010 Nicotiana tabacum HOM05D009415 ORTHO05D282952 1.9e-107 392.5 197 100.0
Nitab4.5_0009529g0020 Nicotiana tabacum HOM05D016109 ORTHO05D010293 1.0e-44 184.1 136 68.4
Nitab4.5_0000362g0120 Nicotiana tabacum HOM05D009415 ORTHO05D285732 5.3e-41 171.8 155 62.6
Nitab4.5_0003760g0010 Nicotiana tabacum HOM05D026919 ORTHO05D283457 2.3e-36 156.4 223 43.9
Nitab4.5_0001534g0060 Nicotiana tabacum HOM05D016109 ORTHO05D010293 9.7e-35 151.0 136 61.0
Nitab4.5_0000339g0160 Nicotiana tabacum HOM05D009415 ORTHO05D002780 1.4e-33 147.1 141 61.7
Nitab4.5_0001929g0020 Nicotiana tabacum HOM05D009415 ORTHO05D002780 1.9e-30 136.7 136 53.7
Nitab4.5_0025410g0010 Nicotiana tabacum HOM05D009415 ORTHO05D285015 9.1e-25 117.9 81 71.6
Nitab4.5_0001357g0150 Nicotiana tabacum HOM05D026919 ORTHO05D282273 8.2e-18 94.7 105 56.2
Nitab4.5_0007409g0040 Nicotiana tabacum HOM05D009415 ORTHO05D282465 1.4e-17 94.0 73 68.5
Nitab4.5_0000535g0180 Nicotiana tabacum HOM05D009415 ORTHO05D016356 2.4e-17 93.2 166 36.1
CiPaw.08G074200 Carya illinoinensis HOM05D000564 ORTHO05D002780 6.1e-13 78.6 124 37.9
Nitab4.5_0013298g0050 Nicotiana tabacum HOM05D024642 ORTHO05D010293 6.1e-13 78.6 69 62.3
Potri.002G009600 Populus trichocarpa HOM05D000564 ORTHO05D002780 5.2e-12 75.5 121 39.7
Sabra02G0007000 Salix brachista HOM05D000564 ORTHO05D002780 8.8e-12 74.7 121 38.8
Sabra05G0195100 Salix brachista HOM05D000564 ORTHO05D002780 1.1e-11 74.3 121 38.8
Duzib093G0382 Durio zibethinus HOM05D000564 ORTHO05D002780 1.5e-11 73.9 121 37.2
Nitab4.5_0000300g0050 Nicotiana tabacum HOM05D009415 ORTHO05D016356 1.5e-11 73.9 228 28.9
Manes.18G004200 Manihot esculenta HOM05D000564 ORTHO05D002780 2.0e-11 73.6 121 40.5
Potri.005G251800 Populus trichocarpa HOM05D000564 ORTHO05D002780 2.0e-11 73.6 121 38.8
TAR628G0472 Trochodendron aralioides HOM05D000564 ORTHO05D002780 2.0e-11 73.6 124 37.1
GSVIVG01013373001 Vitis vinifera HOM05D000564 ORTHO05D002780 2.0e-11 73.6 124 38.7
CiPaw.07G137500 Carya illinoinensis HOM05D000564 ORTHO05D002780 2.6e-11 73.2 124 38.7
Ciclev10000039m.g Citrus clementina HOM05D000564 ORTHO05D002780 3.3e-11 72.8 124 37.1
PGR083G1740 Punica granatum HOM05D000564 ORTHO05D002780 3.3e-11 72.8 124 38.7
Nitab4.5_0003160g0040 Nicotiana tabacum HOM05D009415 ORTHO05D283833 4.4e-11 72.4 82 50.0
Lalb_Chr23g0265741 Lupinus albus HOM05D000564 ORTHO05D002780 5.7e-11 72.0 121 38.8
Actinidia17048 Actinidia chinensis HOM05D000564 ORTHO05D002780 7.4e-11 71.6 124 35.5
Eucgr.F01780 Eucalyptus grandis HOM05D000564 ORTHO05D002780 9.7e-11 71.2 124 37.9
Lj4C806T13 Lonicera japonica HOM05D000564 ORTHO05D002780 9.7e-11 71.2 124 37.1
CAN.G311.125 Capsicum annuum HOM05D000564 ORTHO05D002780 1.3e-10 70.9 124 37.1
Dinv31954 Davidia involucrata HOM05D000564 ORTHO05D002780 1.3e-10 70.9 124 36.3
QL02p014478 Quercus lobata HOM05D000564 ORTHO05D002780 1.3e-10 70.9 124 36.3
Sc15g0004390 Simmondsia chinensis HOM05D000564 ORTHO05D002780 1.3e-10 70.9 121 38.0
Sopen04g036110 Solanum pennellii HOM05D000564 ORTHO05D002780 1.3e-10 70.9 124 37.1
CSS0002623 Camellia sinensis var. sinensis HOM05D000564 ORTHO05D002780 1.7e-10 70.5 124 34.7
Cc10_g00550 Coffea canephora HOM05D000564 ORTHO05D002780 1.7e-10 70.5 121 36.4
Haze_22802 Corylus avellana HOM05D000564 ORTHO05D002780 1.7e-10 70.5 124 37.1
Duzib041G0747 Durio zibethinus HOM05D000564 ORTHO05D002780 1.7e-10 70.5 124 36.3
Gohir.D01G090000 Gossypium hirsutum HOM05D000564 ORTHO05D002780 1.7e-10 70.5 124 36.3
Gorai.002G115700 Gossypium raimondii HOM05D000564 ORTHO05D002780 1.7e-10 70.5 124 36.3
QL11p055968 Quercus lobata HOM05D000564 ORTHO05D002780 1.7e-10 70.5 121 36.4
RcHm_v2.0_Chr7g0215501 Rosa chinensis HOM05D000564 ORTHO05D002780 2.2e-10 70.1 121 37.2
Sed0019066 Sechium edule HOM05D000564 ORTHO05D002780 2.2e-10 70.1 121 34.7
TWI31G1441 Tripterygium wilfordii HOM05D000564 ORTHO05D002780 2.2e-10 70.1 124 35.5
Lj5A172G81 Lonicera japonica HOM05D000564 ORTHO05D002780 2.8e-10 69.7 189 28.0
Solyc04g082490.3 Solanum lycopersicum HOM05D000564 ORTHO05D002780 2.8e-10 69.7 124 36.3
Ah.00g000930 Amaranthus hybridus HOM05D000564 ORTHO05D002780 3.7e-10 69.3 124 37.1
CSS0007243 Camellia sinensis var. sinensis HOM05D000564 ORTHO05D002780 3.7e-10 69.3 121 35.5
Atru.chr13.127 Acer truncatum HOM05D000564 ORTHO05D002780 4.8e-10 68.9 124 35.5
MELO3C017027.2 Cucumis melo HOM05D000564 ORTHO05D002780 4.8e-10 68.9 121 35.5
Dinv41875 Davidia involucrata HOM05D000564 ORTHO05D002780 4.8e-10 68.9 124 36.3
Gohir.A01G104800 Gossypium hirsutum HOM05D000564 ORTHO05D002780 4.8e-10 68.9 124 35.5
Thecc.02G044300 Theobroma cacao HOM05D000564 ORTHO05D002780 4.8e-10 68.9 121 35.5
HanXRQChr06g0184121 Helianthus annuus HOM05D000564 ORTHO05D002780 6.3e-10 68.6 121 36.4
Thecc.08G060400 Theobroma cacao HOM05D000564 ORTHO05D002780 6.3e-10 68.6 116 36.2
DCAR_013926 Daucus carota HOM05D000564 ORTHO05D002780 8.2e-10 68.2 124 34.7
Gohir.A01G175200 Gossypium hirsutum HOM05D000564 ORTHO05D002780 8.2e-10 68.2 121 38.0
Gohir.D01G166300 Gossypium hirsutum HOM05D000564 ORTHO05D002780 8.2e-10 68.2 121 38.0
Gorai.002G206800 Gossypium raimondii HOM05D000564 ORTHO05D002780 8.2e-10 68.2 121 38.0
TPR.G38096 Trifolium pratense HOM05D000564 ORTHO05D002780 8.2e-10 68.2 121 35.5
FAN04G1562 Fragaria x ananassa HOM05D000564 ORTHO05D002780 1.1e-09 67.8 121 36.4
FAN08G0043 Fragaria x ananassa HOM05D000564 ORTHO05D002780 1.1e-09 67.8 121 36.4
Oeu000697.1 Olea europaea HOM05D000564 ORTHO05D002780 1.1e-09 67.8 122 37.7
CsaV3_4G037280 Cucumis sativus L. HOM05D000564 ORTHO05D002780 1.4e-09 67.4 121 34.7
Medtr3g115450 Medicago truncatula HOM05D000564 ORTHO05D002780 1.4e-09 67.4 121 35.5
PGR142G4088 Punica granatum HOM05D000564 ORTHO05D002780 1.4e-09 67.4 122 35.2
Rhsim11G0197500 Rhododendron simsii HOM05D000564 ORTHO05D002780 1.4e-09 67.4 121 35.5
SalBow7G2064 Salvia bowleyana HOM05D000564 ORTHO05D002780 1.4e-09 67.4 121 36.4
Cfa005358 Carpinus fangiana HOM05D000564 ORTHO05D002780 1.8e-09 67.0 121 35.5
Prupe.5G011100 Prunus persica HOM05D000564 ORTHO05D002780 1.8e-09 67.0 121 37.2
CANSAT25G3484 Cannabis sativa HOM05D000564 ORTHO05D002780 2.4e-09 66.6 124 36.3
Cpa.g.sc26.185 Carica papaya HOM05D000564 ORTHO05D002780 2.4e-09 66.6 124 34.7
Cfa014096 Carpinus fangiana HOM05D000564 ORTHO05D002780 2.4e-09 66.6 121 38.0
CiPaw.05G091900 Carya illinoinensis HOM05D000564 ORTHO05D002780 2.4e-09 66.6 121 36.4
FvH4_2g16650 Fragaria vesca HOM05D000564 ORTHO05D002780 2.4e-09 66.6 121 35.5
FAN24G2145 Fragaria x ananassa HOM05D000564 ORTHO05D002780 2.4e-09 66.6 121 35.5
RcHm_v2.0_Chr6g0280781 Rosa chinensis HOM05D000564 ORTHO05D002780 2.4e-09 66.6 124 33.9
MSTRG.24928 Avicennia marina HOM05D000564 ORTHO05D002780 3.1e-09 66.2 121 36.4
BraA04t17693Z Brassica rapa HOM05D000564 ORTHO05D002780 3.1e-09 66.2 119 37.0
Ca_15428_v3 Cicer arietinum L. HOM05D000564 ORTHO05D002780 3.1e-09 66.2 121 35.5
COL.COLO4_36399 Corchorus olitorius HOM05D000564 ORTHO05D002780 3.1e-09 66.2 124 35.5
Migut.C00393 Erythranthe guttata HOM05D000564 ORTHO05D002780 3.1e-09 66.2 124 36.3
Manes.05G130900 Manihot esculenta HOM05D000564 ORTHO05D002780 3.1e-09 66.2 124 36.3
EL10Ac1g01939 Beta vulgaris HOM05D000564 ORTHO05D002780 4.1e-09 65.9 124 35.5
Lsat_1_v5_gn_2_4580 Lactuca sativa HOM05D000564 ORTHO05D002780 4.1e-09 65.9 124 33.9
MD06G1009400 Malus domestica HOM05D000564 ORTHO05D002780 4.1e-09 65.9 121 36.4
Prupe.8G178600 Prunus persica HOM05D000564 ORTHO05D002780 4.1e-09 65.9 121 35.5
Actinidia15499 Actinidia chinensis HOM05D000564 ORTHO05D002780 5.3e-09 65.5 124 33.9
CARHR292420 Cardamine hirsuta HOM05D000564 ORTHO05D002780 5.3e-09 65.5 119 37.0
MD10G1139800 Malus domestica HOM05D000564 ORTHO05D002780 5.3e-09 65.5 121 36.4
Sed0023022 Sechium edule HOM05D000564 ORTHO05D002780 5.3e-09 65.5 121 33.9
SGA_v2.0_scaffold587G53060 Striga asiatica HOM05D000564 ORTHO05D002780 5.3e-09 65.5 121 36.4
BcaC02g08217 Brassica carinata HOM05D000564 ORTHO05D002780 7.0e-09 65.1 119 36.1
A04p21250 Brassica napus HOM05D000564 ORTHO05D002780 7.0e-09 65.1 119 36.1
BolC4t27244H Brassica oleracea HOM05D000564 ORTHO05D002780 7.0e-09 65.1 119 36.1
COL.COLO4_17925 Corchorus olitorius HOM05D000564 ORTHO05D002780 7.0e-09 65.1 121 33.1
TAR381G0938 Trochodendron aralioides HOM05D000564 ORTHO05D002780 7.0e-09 65.1 121 35.5
AT1G42470 Arabidopsis thaliana HOM05D000564 ORTHO05D002780 9.1e-09 64.7 119 35.3
CANSAT25G2553 Cannabis sativa HOM05D000564 ORTHO05D002780 9.1e-09 64.7 121 33.9
Nn5g30968 Nelumbo nucifera HOM05D000564 ORTHO05D002780 9.1e-09 64.7 121 36.4
Oeu026509.1 Olea europaea HOM05D000564 ORTHO05D002780 9.1e-09 64.7 117 37.6
Psat5g010080 Pisum sativum HOM05D000564 ORTHO05D002780 9.1e-09 64.7 121 33.9
AL1G51340 Arabidopsis lyrata HOM05D000564 ORTHO05D002780 1.2e-08 64.3 119 34.5
arahy.Tifrunner.gnm1.ann1.7A0A2P Arachis hypogaea HOM05D000564 ORTHO05D002780 1.2e-08 64.3 121 35.5
arahy.Tifrunner.gnm1.ann1.TAF7VU Arachis hypogaea HOM05D000564 ORTHO05D002780 1.2e-08 64.3 121 35.5
FvH4_5g25290 Fragaria vesca HOM05D000564 ORTHO05D002780 1.2e-08 64.3 121 35.5
FAN18G0314 Fragaria x ananassa HOM05D000564 ORTHO05D002780 1.2e-08 64.3 121 35.5
Lalb_Chr11g0061571 Lupinus albus HOM05D000564 ORTHO05D002780 1.2e-08 64.3 121 35.5
Potri.009G167000 Populus trichocarpa HOM05D000564 ORTHO05D002780 1.2e-08 64.3 119 35.3
DCAR_006284 Daucus carota HOM05D000564 ORTHO05D002780 1.6e-08 63.9 121 34.7
Manes.11G110701 Manihot esculenta HOM05D000564 ORTHO05D002780 1.6e-08 63.9 148 29.7
Hund05094 Selenicereus undatus HOM05D000564 ORTHO05D002780 1.6e-08 63.9 114 36.8
THA.LOC104813176 Tarenaya hassleriana HOM05D000564 ORTHO05D002780 1.6e-08 63.9 124 32.3
BcaB06g28180 Brassica carinata HOM05D000564 ORTHO05D002780 2.0e-08 63.5 119 35.3
MELO3C013507.2 Cucumis melo HOM05D000564 ORTHO05D002780 2.0e-08 63.5 121 33.1
Lj1g0023322 Lotus japonicus HOM05D000564 ORTHO05D002780 2.0e-08 63.5 121 34.7
unitig_747.g21540 Utricularia gibba HOM05D000564 ORTHO05D002780 2.0e-08 63.5 122 35.2
Ciclev10030120m.g Citrus clementina HOM05D000564 ORTHO05D002780 2.6e-08 63.2 121 33.1
CsaV3_6G011220 Cucumis sativus L. HOM05D000564 ORTHO05D002780 2.6e-08 63.2 121 33.1
ECA238G2170 Erigeron canadensis HOM05D000564 ORTHO05D002780 2.6e-08 63.2 121 33.1
Thhalv10016155m.g Eutrema salsugineum HOM05D000564 ORTHO05D002780 2.6e-08 63.2 119 35.3
BcaB02g10131 Brassica carinata HOM05D000564 ORTHO05D002780 3.5e-08 62.8 119 34.5
Nitab4.5_0002137g0100 Nicotiana tabacum HOM05D009415 ORTHO05D284878 3.5e-08 62.8 237 27.0
Sp4g10810 Schrenkiella parvula HOM05D000564 ORTHO05D002780 3.5e-08 62.8 116 36.2
SGA_v2.0_scaffold319G48542 Striga asiatica HOM05D000564 ORTHO05D002780 3.5e-08 62.8 121 35.5
BcaC02g10930 Brassica carinata HOM05D000564 ORTHO05D002780 4.5e-08 62.4 119 34.5
A07p18520 Brassica napus HOM05D000564 ORTHO05D002780 4.5e-08 62.4 119 34.5
C04p23550 Brassica napus HOM05D000564 ORTHO05D002780 4.5e-08 62.4 119 34.5
BolC4t23858H Brassica oleracea HOM05D000564 ORTHO05D002780 4.5e-08 62.4 119 34.5
BraA07t29566Z Brassica rapa HOM05D000564 ORTHO05D002780 4.5e-08 62.4 119 34.5
Nn6g31715 Nelumbo nucifera HOM05D000564 ORTHO05D002780 4.5e-08 62.4 124 33.9
AUR62012915 Chenopodium quinoa HOM05D000564 ORTHO05D002780 5.9e-08 62.0 118 36.4
Nitab4.5_0000929g0110 Nicotiana tabacum HOM05D009415 ORTHO05D016356 5.9e-08 62.0 77 41.6
Nitab4.5_0004470g0030 Nicotiana tabacum HOM05D000564 ORTHO05D002780 5.9e-08 62.0 131 34.4
Aqoxy6G01639 Aquilegia oxysepala HOM05D000564 ORTHO05D002780 7.7e-08 61.6 121 34.7
HanXRQChr14g0427461 Helianthus annuus HOM05D000564 ORTHO05D002780 7.7e-08 61.6 124 32.3
Psat2g001080 Pisum sativum HOM05D000564 ORTHO05D002780 7.7e-08 61.6 122 34.4
Medtr5g099070 Medicago truncatula HOM05D000564 ORTHO05D002780 1.0e-07 61.2 122 34.4
TPR.G18634 Trifolium pratense HOM05D000564 ORTHO05D002780 1.0e-07 61.2 125 33.6
Rhsim06G0006500 Rhododendron simsii HOM05D000564 ORTHO05D002780 1.3e-07 60.8 121 33.9
arahy.Tifrunner.gnm1.ann1.LDA3VX Arachis hypogaea HOM05D000564 ORTHO05D002780 1.7e-07 60.5 116 32.8
EL10Ac9g21241 Beta vulgaris HOM05D000564 ORTHO05D002780 1.7e-07 60.5 122 32.8
Glyma.04G017300 Glycine max HOM05D000564 ORTHO05D002780 1.7e-07 60.5 122 34.4
Atru.chr5.3545 Acer truncatum HOM05D000564 ORTHO05D002780 2.2e-07 60.1 122 34.4
arahy.Tifrunner.gnm1.ann1.RY1VLM Arachis hypogaea HOM05D000564 ORTHO05D002780 2.2e-07 60.1 116 32.8
Carub.0001s3427 Capsella rubella HOM05D000564 ORTHO05D002780 2.2e-07 60.1 119 31.9
Ca_06501_v3 Cicer arietinum L. HOM05D000564 ORTHO05D002780 2.2e-07 60.1 122 33.6
FAN15G2627 Fragaria x ananassa HOM05D000564 ORTHO05D002780 2.2e-07 60.1 121 32.2
LjContig00081g0019328 Lotus japonicus HOM05D000564 ORTHO05D002780 2.2e-07 60.1 116 33.6
Lalb_Chr04g0246941 Lupinus albus HOM05D000564 ORTHO05D002780 2.2e-07 60.1 110 33.6
PSO541G5974 Papaver somniferum HOM05D000564 ORTHO05D002780 2.2e-07 60.1 116 36.2
THA.LOC104801956 Tarenaya hassleriana HOM05D000564 ORTHO05D002780 2.2e-07 60.1 119 33.6
AUR62011714 Chenopodium quinoa HOM05D000564 ORTHO05D002780 2.9e-07 59.7 119 36.1
TWI56G0100 Tripterygium wilfordii HOM05D000564 ORTHO05D002780 2.9e-07 59.7 108 32.4
GSVIVG01023884001 Vitis vinifera HOM05D000564 ORTHO05D002780 2.9e-07 59.7 124 34.7
PSO675G3157 Papaver somniferum HOM05D000564 ORTHO05D002780 5.0e-07 58.9 116 36.2
Cpa.g.sc20.213 Carica papaya HOM05D000564 ORTHO05D002780 6.5e-07 58.5 121 33.1
Glyma.02G310900 Glycine max HOM05D000564 ORTHO05D002780 6.5e-07 58.5 113 31.0
VMungo0647G1134 Vigna mungo HOM05D000564 ORTHO05D002780 6.5e-07 58.5 121 30.6
Aa31sc108G40 Aethionema arabicum HOM05D000564 ORTHO05D002780 8.5e-07 58.2 119 32.8
Glyma.06G017700 Glycine max HOM05D000564 ORTHO05D002780 8.5e-07 58.2 121 34.7
Glyma.14G001500 Glycine max HOM05D000564 ORTHO05D002780 8.5e-07 58.2 115 32.2
Phvul.008G291900 Phaseolus vulgaris HOM05D000564 ORTHO05D002780 8.5e-07 58.2 116 31.9
Sabra09G0130100 Salix brachista HOM05D000564 ORTHO05D002780 8.5e-07 58.2 119 33.6
BraA08t34378Z Brassica rapa HOM05D000564 ORTHO05D002780 1.1e-06 57.8 121 31.4
VMungo1309G2497 Vigna mungo HOM05D000564 ORTHO05D002780 1.1e-06 57.8 109 34.9
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 1.5e-06 57.4 121 34.7
Phvul.009G011300 Phaseolus vulgaris HOM05D000564 ORTHO05D002780 1.9e-06 57.0 109 34.9
THA.LOC104824737 Tarenaya hassleriana HOM05D000564 ORTHO05D002780 1.9e-06 57.0 123 32.5
ATR0807G132 Amborella trichopoda HOM05D000564 ORTHO05D002780 2.5e-06 56.6 121 29.8
HPP92_001734 Vanilla planifolia HOM05D000564 ORTHO05D002780 3.2e-06 56.2 114 32.5
CARHR294090 Cardamine hirsuta HOM05D000564 ORTHO05D002780 7.2e-06 55.1 121 29.8


User provided reference genes

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