Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.1e-108 396.7 205 100.0
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.1e-89 333.6 233 78.1
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 4.6e-88 328.2 234 76.9
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 4.6e-88 328.2 234 76.9
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 3.9e-87 325.1 231 77.5
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 1.2e-83 313.5 206 83.0
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 2.0e-83 312.8 206 81.1
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 4.9e-82 308.1 233 75.5
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 6.4e-82 307.8 206 79.6
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 8.4e-82 307.4 230 72.6
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.4e-81 305.8 234 70.9
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.4e-81 305.8 234 70.9
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 2.4e-81 305.8 233 71.7
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 5.4e-81 304.7 233 72.1
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 5.4e-81 304.7 232 74.6
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 7.1e-81 304.3 232 73.3
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 9.3e-81 303.9 233 72.1
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 2.7e-80 302.4 235 71.1
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 3.5e-80 302.0 234 70.1
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 4.6e-80 301.6 231 73.2
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 6.0e-80 301.2 233 70.8
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 7.9e-80 300.8 233 72.1
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 1.0e-79 300.4 231 73.6
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.3e-79 300.1 232 73.7
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 1.8e-79 299.7 232 72.0
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 3.0e-79 298.9 233 70.8
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 3.0e-79 298.9 228 74.6
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 5.1e-79 298.1 231 71.9
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 6.7e-79 297.7 234 70.1
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 6.7e-79 297.7 234 69.7
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 6.7e-79 297.7 216 76.9
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 6.7e-79 297.7 231 71.9
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 6.7e-79 297.7 233 72.1
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 6.7e-79 297.7 249 67.5
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 1.1e-78 297.0 234 69.7
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 1.1e-78 297.0 232 70.7
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 1.1e-78 297.0 232 70.7
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 1.5e-78 296.6 233 71.2
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 3.3e-78 295.4 207 76.8
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 5.6e-78 294.7 234 71.4
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 7.4e-78 294.3 234 70.1
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 9.6e-78 293.9 232 71.1
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 9.6e-78 293.9 231 69.3
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 9.6e-78 293.9 233 70.4
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 1.3e-77 293.5 234 68.8
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 1.3e-77 293.5 234 68.4
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 1.3e-77 293.5 234 68.4
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 1.3e-77 293.5 233 73.0
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 1.3e-77 293.5 232 72.4
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 1.6e-77 293.1 234 68.8
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 2.1e-77 292.7 233 70.4
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 2.1e-77 292.7 232 70.7
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 2.1e-77 292.7 233 70.8
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 2.8e-77 292.4 235 69.8
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 2.8e-77 292.4 232 70.7
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 3.6e-77 292.0 234 68.8
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 3.6e-77 292.0 234 68.4
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 3.6e-77 292.0 232 72.0
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 3.6e-77 292.0 234 70.1
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 4.8e-77 291.6 233 69.5
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 6.2e-77 291.2 237 68.4
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 6.2e-77 291.2 237 68.4
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 6.2e-77 291.2 234 69.7
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 8.1e-77 290.8 234 70.1
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 8.1e-77 290.8 236 68.6
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 8.1e-77 290.8 236 68.6
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 8.1e-77 290.8 232 70.3
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 8.1e-77 290.8 232 71.6
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 8.1e-77 290.8 230 70.4
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 1.1e-76 290.4 231 70.6
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 1.1e-76 290.4 229 69.4
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 1.4e-76 290.0 233 69.1
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 1.4e-76 290.0 243 67.5
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 1.8e-76 289.7 234 67.9
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 1.8e-76 289.7 234 68.4
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 3.1e-76 288.9 232 68.5
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 3.1e-76 288.9 234 69.2
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 4.0e-76 288.5 231 68.8
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 5.3e-76 288.1 234 69.7
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 6.9e-76 287.7 234 70.1
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 6.9e-76 287.7 233 69.1
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 1.2e-75 287.0 234 68.4
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 1.2e-75 287.0 233 69.5
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 1.2e-75 287.0 228 70.6
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 1.5e-75 286.6 236 67.8
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 1.5e-75 286.6 236 67.8
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 1.5e-75 286.6 233 70.0
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 1.5e-75 286.6 233 68.7
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 2.6e-75 285.8 236 67.8
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 5.8e-75 284.6 233 68.7
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 7.6e-75 284.3 233 67.4
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 1.3e-74 283.5 233 68.2
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 1.3e-74 283.5 232 67.2
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.3e-74 283.5 217 72.8
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 2.2e-74 282.7 232 70.3
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 3.8e-74 282.0 234 67.9
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 4.9e-74 281.6 233 67.0
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 4.9e-74 281.6 233 67.4
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 4.9e-74 281.6 232 68.1
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 6.4e-74 281.2 228 68.4
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 6.4e-74 281.2 233 67.0
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 2.4e-73 279.3 238 67.2
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 3.2e-73 278.9 227 70.5
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 4.2e-73 278.5 239 68.2
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 7.1e-73 277.7 231 68.4
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 1.2e-72 276.9 233 67.0
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.2e-72 276.9 233 67.0
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 2.7e-72 275.8 232 66.8
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 3.5e-72 275.4 232 68.5
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 7.9e-72 274.2 227 69.2
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 1.3e-71 273.5 237 65.8
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 1.8e-71 273.1 232 68.5
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 2.3e-71 272.7 235 66.8
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.5e-70 270.0 230 67.4
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 4.3e-70 268.5 272 59.2
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 7.4e-70 267.7 235 64.7
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 9.6e-70 267.3 230 67.0
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 2.1e-69 266.2 230 66.5
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 3.7e-69 265.4 229 66.4
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 4.8e-69 265.0 223 67.3
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.8e-69 265.0 230 66.5
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 6.2e-69 264.6 237 65.8
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 8.1e-69 264.2 230 66.1
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 1.1e-68 263.8 233 65.7
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 1.1e-68 263.8 231 65.8
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 4.0e-68 261.9 234 65.4
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 5.8e-67 258.1 287 54.7
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 3.8e-66 255.4 232 64.2
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 6.5e-66 254.6 232 63.8
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 1.9e-65 253.1 234 64.1
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 2.7e-64 249.2 234 62.4
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 2.7e-64 249.2 254 59.1
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 1.0e-63 247.3 236 61.4
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.9e-63 245.4 213 66.2
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 1.9e-62 243.0 233 61.4
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 1.8e-60 236.5 233 59.2
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 1.5e-59 233.4 231 57.6
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.4e-57 226.9 256 56.6
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 6.9e-52 208.0 189 63.5
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 5.5e-49 198.4 185 64.3
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 5.5e-49 198.4 236 53.0
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.4e-47 193.7 121 81.8
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 3.3e-46 189.1 125 79.2
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 4.4e-46 188.7 121 80.2
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.2e-45 186.4 217 54.4
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.1e-44 184.1 123 76.4
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 2.4e-44 183.0 158 67.7
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.2e-43 180.6 190 58.9
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.4e-43 179.1 112 83.9
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.5e-43 178.7 112 83.0
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 7.7e-43 177.9 232 48.7
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.0e-42 175.3 112 82.1
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 9.4e-41 171.0 240 46.2
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 9.7e-38 161.0 125 68.8
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 3.5e-35 152.5 175 56.6
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 4.7e-32 142.1 136 61.8
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 8.8e-31 137.9 78 91.0
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 8.2e-29 131.3 82 80.5
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.8e-28 130.2 78 83.3
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 7.0e-28 128.3 78 83.3
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 2.7e-27 126.3 78 82.1
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 2.7e-24 116.3 84 72.6
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.6e-24 115.9 162 49.4
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 6.1e-24 115.2 202 42.6
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 7.5e-22 108.2 102 59.8
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 1.3e-21 107.5 205 40.5
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 1.7e-21 107.1 176 42.0
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 2.8e-21 106.3 95 66.3
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 1.1e-20 104.4 70 75.7
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 8.0e-16 88.2 75 69.3
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.0e-15 87.8 44 93.2
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 2.6e-14 83.2 56 76.8
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.8e-08 63.2 95 44.2
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 4.7e-08 62.4 53 60.4
Zm00001eb225910 Zea mays HOM05D003885 ORTHO05D444501 4.7e-08 62.4 50 70.0
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 8.0e-08 61.6 94 46.8
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 1.0e-07 61.2 98 39.8


User provided reference genes

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