Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 9.4e-110 400.2 202 100.0
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 1.6e-85 319.7 173 94.8
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 1.4e-76 290.0 173 86.7
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 1.0e-68 263.8 157 87.3
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 4.0e-68 261.9 157 86.6
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 9.8e-67 257.3 157 86.0
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 4.9e-66 255.0 157 84.7
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 1.3e-29 134.0 74 78.4
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 1.3e-29 134.0 75 82.7
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 1.3e-29 134.0 75 80.0
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 2.8e-29 132.9 75 82.7
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 3.6e-29 132.5 71 80.3
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 3.6e-29 132.5 71 81.7
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 6.2e-29 131.7 71 81.7
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 8.1e-29 131.3 71 80.3
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 8.1e-29 131.3 130 52.3
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 8.1e-29 131.3 140 53.6
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 1.8e-28 130.2 71 80.3
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 3.1e-28 129.4 70 82.9
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 3.1e-28 129.4 70 82.9
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 3.1e-28 129.4 70 82.9
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 3.1e-28 129.4 70 82.9
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 3.1e-28 129.4 70 82.9
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 3.1e-28 129.4 70 82.9
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 3.1e-28 129.4 70 82.9
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 3.1e-28 129.4 70 82.9
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 3.1e-28 129.4 70 82.9
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 3.1e-28 129.4 70 82.9
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 3.1e-28 129.4 70 82.9
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 3.1e-28 129.4 70 82.9
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 3.1e-28 129.4 70 82.9
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 3.1e-28 129.4 69 84.1
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 4.0e-28 129.0 75 74.7
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 4.0e-28 129.0 70 81.4
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 5.3e-28 128.6 130 53.1
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 5.3e-28 128.6 71 80.3
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 5.3e-28 128.6 71 80.3
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 6.9e-28 128.3 71 77.5
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.2e-27 127.5 71 78.9
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 1.2e-27 127.5 71 78.9
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 1.2e-27 127.5 76 75.0
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 1.5e-27 127.1 75 73.3
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 1.5e-27 127.1 70 80.0
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 1.5e-27 127.1 69 81.2
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 2.6e-27 126.3 71 78.9
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 2.6e-27 126.3 70 81.4
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 4.5e-27 125.6 130 51.5
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 2.9e-26 122.9 102 59.8
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 2.9e-26 122.9 129 51.2
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 2.9e-26 122.9 71 76.1
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 3.8e-26 122.5 70 74.3
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 4.9e-26 122.1 70 78.6
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 4.9e-26 122.1 70 78.6
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 4.9e-26 122.1 70 78.6
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 4.9e-26 122.1 70 78.6
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.9e-25 120.2 70 78.6
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 3.2e-25 119.4 138 50.0
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 4.2e-25 119.0 138 50.0
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 4.2e-25 119.0 69 75.4
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 4.2e-25 119.0 69 75.4
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 4.2e-25 119.0 69 75.4
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 1.2e-24 117.5 69 73.9
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 1.6e-24 117.1 147 44.9
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 1.6e-24 117.1 74 71.6
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 1.6e-24 117.1 131 52.7
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 3.5e-24 115.9 70 77.1
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 1.0e-23 114.4 69 72.5
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 1.0e-23 114.4 101 60.4
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 1.3e-23 114.0 69 71.0
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 2.3e-23 113.2 62 83.9
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 5.1e-23 112.1 70 74.3
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 1.9e-22 110.2 69 71.0
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 2.1e-21 106.7 58 81.0
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 4.8e-21 105.5 62 75.8
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 4.8e-21 105.5 62 75.8
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 4.8e-21 105.5 62 75.8
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 4.8e-21 105.5 62 75.8
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 4.8e-21 105.5 62 75.8
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 4.8e-21 105.5 62 75.8
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 4.8e-21 105.5 62 75.8
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 4.8e-21 105.5 62 75.8
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 4.8e-21 105.5 62 75.8
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 4.8e-21 105.5 62 75.8
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 6.2e-21 105.1 62 74.2
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 6.2e-21 105.1 62 74.2
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 6.2e-21 105.1 62 74.2
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 8.1e-21 104.8 66 74.2
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 5.3e-20 102.1 75 65.3
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 5.3e-20 102.1 75 65.3
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 5.3e-20 102.1 75 65.3
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 5.3e-20 102.1 75 65.3
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 6.9e-20 101.7 72 68.1
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 9.0e-20 101.3 132 45.5
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 1.2e-19 100.9 63 74.6
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 3.4e-19 99.4 128 43.8
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 1.7e-18 97.1 69 68.1
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 1.7e-18 97.1 68 67.6
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-18 97.1 68 67.6
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 3.8e-18 95.9 52 76.9
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.5e-18 95.1 68 66.2
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 1.4e-17 94.0 64 70.3
RcHm_v2.0_Chr5g0034161 Rosa chinensis HOM05D002824 ORTHO05D008771 5.5e-17 92.0 54 74.1
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 6.0e-16 88.6 118 46.6
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 6.0e-16 88.6 68 64.7
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 7.9e-16 88.2 118 46.6
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 1.0e-15 87.8 116 48.3
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 2.3e-15 86.7 68 66.2
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 5.1e-15 85.5 63 63.5
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.7e-15 85.1 62 64.5
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 6.7e-15 85.1 49 77.6
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 3.3e-14 82.8 72 48.6
Cc09_g05310 Coffea canephora HOM05D002824 ORTHO05D008771 5.7e-14 82.0 74 54.1
PRCOL_00002279 Prasinoderma coloniale HOM05D002824 ORTHO05D008771 3.1e-12 76.3 80 46.2
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.4e-11 72.8 54 63.0
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 3.4e-11 72.8 111 42.3
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 3.4e-11 72.8 111 42.3
Cre04.g218700 Chlamydomonas reinhardtii HOM05D002824 ORTHO05D008771 4.5e-11 72.4 66 48.5
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 7.6e-11 71.6 48 64.6
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.1e-09 67.8 72 55.6
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 3.2e-09 66.2 66 51.5
Nn002s41361 Nelumbo nucifera HOM05D002824 ORTHO05D008771 3.2e-09 66.2 34 85.3
Nn021s41523 Nelumbo nucifera HOM05D002824 ORTHO05D008771 3.2e-09 66.2 34 85.3
Nn070s42371 Nelumbo nucifera HOM05D002824 ORTHO05D008771 3.2e-09 66.2 34 85.3
FAN22G0293 Fragaria x ananassa HOM05D002824 ORTHO05D008771 2.7e-08 63.2 66 50.0
Nitab4.5_0006114g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009867 2.7e-08 63.2 37 81.1
ClCG00G003150 Citrullus lanatus HOM05D002824 ORTHO05D008771 1.8e-07 60.5 46 63.0
MBI15_g40528_MAGBIO Magnolia biondii HOM05D002824 ORTHO05D008771 2.3e-07 60.1 37 67.6
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 3.9e-07 59.3 33 84.8
MELO3C032365.2 Cucumis melo HOM05D002824 ORTHO05D008771 6.7e-07 58.5 72 50.0
MELO3C033566.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.9e-06 57.0 71 50.7
ClCG11G017170 Citrullus lanatus HOM05D002824 ORTHO05D008771 4.3e-06 55.8 39 66.7
Nitab4.5_0011882g0040 Nicotiana tabacum HOM05D002824 ORTHO05D007162 7.4e-06 55.1 36 77.8
Nitab4.5_0020737g0030 Nicotiana tabacum HOM05D002824 ORTHO05D007162 9.7e-06 54.7 30 83.3


User provided reference genes

Program Settings