Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 0.0e+00 1923.3 963 100.0
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 0.0e+00 1523.1 969 82.2
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 0.0e+00 1257.7 1039 66.7
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 0.0e+00 1198.3 1029 64.7
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 0.0e+00 1141.3 1029 63.3
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 0.0e+00 1106.3 1029 61.7
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.6e-199 699.5 515 74.6
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.8e-190 670.6 468 79.1
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 3.5e-186 656.4 645 59.5
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 2.8e-167 593.6 1089 38.2
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 2.8e-167 593.6 1019 40.5
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 4.0e-166 589.7 1089 38.2
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 9.2e-163 578.6 1043 38.5
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 5.4e-155 552.7 1165 35.8
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 8.6e-153 545.4 1110 36.5
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 1.8e-150 537.7 1073 35.9
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 8.9e-150 535.4 1161 35.6
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 1.1e-147 528.5 1091 35.8
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 4.7e-143 513.1 1060 34.5
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 6.2e-143 512.7 1082 34.9
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 5.2e-142 509.6 1064 35.7
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 1.3e-140 505.0 1099 34.6
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 8.4e-140 502.3 1018 35.9
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 1.9e-139 501.1 1078 34.0
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 7.8e-138 495.7 1100 33.9
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 5.1e-137 493.0 1107 33.2
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 2.1e-135 487.6 1037 35.9
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 2.8e-135 487.3 1073 34.4
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 8.1e-135 485.7 1007 36.6
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 1.2e-133 481.9 1006 36.1
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 1.5e-133 481.5 1098 34.2
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 1.5e-133 481.5 1071 33.3
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 4.9e-132 476.5 1021 35.4
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 3.5e-130 470.3 1082 33.0
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 4.6e-130 469.9 1077 33.3
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 7.8e-130 469.2 1051 33.2
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 1.0e-129 468.8 1058 33.5
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 6.6e-129 466.1 1088 33.9
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 4.3e-128 463.4 1065 34.6
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 9.6e-128 462.2 1115 33.1
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 2.2e-124 451.1 1159 32.6
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 3.5e-122 443.7 1050 34.4
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 3.5e-122 443.7 1031 33.5
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 1.5e-120 438.3 1049 32.9
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 1.9e-120 438.0 1067 33.0
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 9.6e-120 435.6 1089 32.2
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 2.1e-119 434.5 1028 32.6
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 2.0e-117 427.9 1093 32.3
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 4.5e-117 426.8 1032 32.1
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 7.6e-117 426.0 1087 32.0
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 1.3e-116 425.2 1049 31.4
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.1e-115 422.2 1177 30.8
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 4.2e-115 420.2 1068 32.2
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 3.0e-113 414.1 1043 32.1
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.8e-110 404.8 1170 30.9
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 2.4e-110 404.4 1070 32.2
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.4e-110 404.4 1100 31.4
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 2.0e-109 401.4 1041 32.2
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 2.9e-108 397.5 1025 31.5
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 3.8e-108 397.1 1122 30.2
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 6.5e-108 396.4 1014 32.4
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 5.5e-107 393.3 1116 30.0
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 7.9e-106 389.4 1019 31.8
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 7.9e-106 389.4 1014 32.3
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 7.9e-106 389.4 991 30.5
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 6.7e-105 386.3 959 32.0
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 4.3e-104 383.6 1068 31.5
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 5.7e-104 383.3 1038 32.1
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 6.3e-103 379.8 1015 31.4
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 1.2e-101 375.6 1046 31.6
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 1.5e-101 375.2 1076 30.9
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 2.2e-100 371.3 506 44.9
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 2.9e-100 370.9 985 31.7
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 5.0e-100 370.2 837 33.9
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 8.4e-100 369.4 962 31.9
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 1.3e-97 362.1 1001 31.8
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 5.1e-97 360.1 991 30.7
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.1e-96 359.0 983 32.2
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 7.4e-96 356.3 1169 29.9
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 1.1e-91 342.4 1058 29.9
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 2.1e-90 338.2 792 33.3
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.1e-90 338.2 869 31.9
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 1.8e-89 335.1 832 31.4
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 1.5e-88 332.0 1065 30.7
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 1.3e-87 328.9 984 30.5
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 1.7e-87 328.6 676 34.8
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 3.7e-87 327.4 1058 29.6
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 1.8e-86 325.1 784 32.5
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 1.3e-84 318.9 795 32.6
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 1.7e-84 318.5 794 32.4
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 2.9e-84 317.8 892 30.9
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 1.4e-83 315.5 672 36.3
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 8.2e-79 299.7 627 34.1
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 1.1e-78 299.3 656 32.6
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.4e-73 282.3 1030 27.9
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 7.2e-67 260.0 216 70.4
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.2e-66 259.2 1001 28.9
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.1e-59 236.1 309 45.3
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.1e-58 231.9 934 28.9
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 1.8e-57 228.8 527 32.3
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 2.3e-57 228.4 1093 25.4
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 5.0e-52 210.7 182 60.4
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 6.1e-50 203.8 890 27.6
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 6.8e-49 200.3 966 26.0
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 1.3e-47 196.1 278 39.6
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.9e-47 194.9 160 60.0
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 1.7e-44 185.7 684 28.8
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 1.4e-41 176.0 527 31.5
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 2.3e-41 175.3 302 35.1
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.6e-40 171.8 539 31.2
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 7.0e-38 163.7 142 61.3
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.0e-37 162.2 142 58.5
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 2.7e-37 161.8 148 56.8
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 1.3e-36 159.5 113 65.5
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 1.7e-36 159.1 411 31.4
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 5.0e-36 157.5 178 50.0
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 7.3e-35 153.7 202 45.5
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 2.3e-33 148.7 509 29.1
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 4.0e-33 147.9 666 25.2
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 5.2e-33 147.5 214 42.1
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 1.5e-32 146.0 681 24.2
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 3.9e-28 131.3 761 26.0
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 3.6e-26 124.8 974 23.3
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 1.4e-25 122.9 146 47.3
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 3.1e-25 121.7 691 25.8
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 3.8e-23 114.8 732 25.7
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 6.4e-23 114.0 705 25.0
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 7.1e-22 110.5 151 40.4
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 1.2e-21 109.8 307 29.3
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 6.0e-21 107.5 749 23.1
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 5.1e-20 104.4 702 24.4
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 6.6e-20 104.0 307 28.0
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 3.3e-19 101.7 321 28.0
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 2.8e-18 98.6 81 58.0
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 6.2e-18 97.4 499 25.1
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 4.0e-17 94.7 447 26.6
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 3.8e-15 88.2 59 64.4
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 3.2e-14 85.1 207 31.9
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 1.9e-11 75.9 84 48.8
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 3.6e-10 71.6 451 23.1
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 3.4e-08 65.1 79 43.0
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 5.8e-08 64.3 79 43.0
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 2.2e-07 62.4 194 29.9
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 2.4e-06 58.9 71 42.3
SMO205G0005 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 7.1e-06 57.4 63 41.3


User provided reference genes

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