Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.3e-27 125.9 79 100.0
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 4.6e-20 100.9 67 80.6
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 6.0e-20 100.5 67 79.1
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 8.7e-19 96.7 55 89.1
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 8.7e-19 96.7 55 89.1
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.3e-18 94.7 55 89.1
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 9.6e-18 93.2 54 85.2
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.6e-17 92.4 72 72.2
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 2.4e-16 88.6 55 80.0
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 6.9e-16 87.0 52 73.1
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 1.2e-15 86.3 67 61.2
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 1.5e-15 85.9 67 64.2
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 2.0e-15 85.5 55 74.5
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.0e-15 85.5 51 74.5
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.0e-15 85.5 51 74.5
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 3.4e-15 84.7 50 80.0
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 3.4e-15 84.7 67 59.7
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 3.4e-15 84.7 67 59.7
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 4.5e-15 84.3 52 73.1
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 4.5e-15 84.3 55 70.9
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 5.8e-15 84.0 52 71.2
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 9.9e-15 83.2 52 71.2
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 1.3e-14 82.8 52 75.0
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 1.7e-14 82.4 52 73.1
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 1.7e-14 82.4 60 70.0
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 1.7e-14 82.4 52 73.1
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 2.2e-14 82.0 67 55.2
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 2.2e-14 82.0 55 70.9
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 2.9e-14 81.6 52 73.1
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 3.8e-14 81.3 55 69.1
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 4.9e-14 80.9 50 74.0
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 6.4e-14 80.5 50 78.0
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 6.4e-14 80.5 50 78.0
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 6.4e-14 80.5 50 78.0
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 6.4e-14 80.5 50 78.0
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 6.4e-14 80.5 50 78.0
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 6.4e-14 80.5 50 78.0
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 6.4e-14 80.5 49 73.5
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 6.4e-14 80.5 49 77.6
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 8.4e-14 80.1 51 66.7
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 1.1e-13 79.7 67 59.7
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.4e-13 79.3 51 70.6
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 1.4e-13 79.3 67 67.2
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 1.4e-13 79.3 50 70.0
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 1.4e-13 79.3 49 77.6
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 1.9e-13 79.0 59 66.1
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 1.9e-13 79.0 49 75.5
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 2.4e-13 78.6 67 50.7
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 2.4e-13 78.6 49 75.5
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 2.4e-13 78.6 49 75.5
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 2.4e-13 78.6 49 75.5
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 3.2e-13 78.2 49 77.6
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 3.2e-13 78.2 50 78.0
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 3.2e-13 78.2 50 72.0
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 3.2e-13 78.2 49 73.5
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 4.2e-13 77.8 51 68.6
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 4.2e-13 77.8 49 75.5
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 4.2e-13 77.8 51 64.7
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 5.4e-13 77.4 48 79.2
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 5.4e-13 77.4 50 74.0
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 5.4e-13 77.4 52 69.2
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 5.4e-13 77.4 49 73.5
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 5.4e-13 77.4 48 72.9
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 5.4e-13 77.4 67 65.7
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 5.4e-13 77.4 49 73.5
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 7.1e-13 77.0 49 71.4
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 7.1e-13 77.0 49 75.5
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 7.1e-13 77.0 51 70.6
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 7.1e-13 77.0 49 69.4
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 9.3e-13 76.6 49 69.4
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 1.2e-12 76.3 50 72.0
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 1.2e-12 76.3 49 67.3
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 1.2e-12 76.3 49 75.5
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 1.6e-12 75.9 50 74.0
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 1.6e-12 75.9 52 76.9
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 1.6e-12 75.9 67 52.2
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 2.1e-12 75.5 52 63.5
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 2.1e-12 75.5 52 63.5
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 2.1e-12 75.5 50 70.0
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.1e-12 75.5 48 70.8
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.1e-12 75.5 48 70.8
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.7e-12 75.1 52 69.2
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 2.7e-12 75.1 50 70.0
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 3.5e-12 74.7 49 71.4
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 3.5e-12 74.7 67 56.7
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 4.6e-12 74.3 50 72.0
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 4.6e-12 74.3 49 73.5
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 4.6e-12 74.3 50 68.0
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 6.0e-12 73.9 49 67.3
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 6.0e-12 73.9 50 70.0
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 6.0e-12 73.9 51 62.7
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 6.0e-12 73.9 49 73.5
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 7.9e-12 73.6 50 64.0
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 2.3e-11 72.0 55 65.5
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 3.0e-11 71.6 67 53.7
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 3.0e-11 71.6 49 67.3
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 3.0e-11 71.6 76 48.7
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 3.9e-11 71.2 50 64.0
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 3.9e-11 71.2 49 67.3
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 3.9e-11 71.2 49 65.3
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.1e-10 69.7 50 64.0
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.1e-10 69.7 67 52.2
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 1.1e-10 69.7 50 68.0
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 1.1e-10 69.7 50 64.0
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 1.1e-10 69.7 49 63.3
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 1.5e-10 69.3 49 63.3
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 1.9e-10 68.9 67 50.7
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 2.5e-10 68.6 49 63.3
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 5.6e-10 67.4 50 62.0
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 5.6e-10 67.4 49 61.2
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 5.6e-10 67.4 49 61.2
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 7.4e-10 67.0 53 62.3
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 7.4e-10 67.0 50 60.0
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 1.6e-09 65.9 67 53.7
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.6e-09 65.9 67 53.7
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 2.1e-09 65.5 49 59.2
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.1e-09 65.5 49 59.2
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.1e-09 65.5 49 59.2
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.1e-09 65.5 49 59.2
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 2.8e-09 65.1 67 53.7
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 4.8e-09 64.3 49 57.1
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 8.1e-09 63.5 49 57.1
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 9.0e-08 60.1 55 45.5
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 4.9e-06 54.3 50 50.0


User provided reference genes

Program Settings