Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 3.0e-232 808.1 412 100.0
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 2.7e-172 609.0 457 72.4
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 5.3e-168 594.7 424 72.9
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 1.5e-154 550.1 462 67.5
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 9.7e-154 547.4 454 68.5
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 8.3e-121 438.0 282 80.9
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 8.3e-113 411.4 485 48.9
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 1.8e-107 393.7 480 50.0
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 1.7e-105 387.1 436 51.1
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.3e-102 377.5 467 48.0
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 1.1e-101 374.4 465 49.9
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 8.9e-99 364.8 464 46.8
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 9.8e-98 361.3 467 46.9
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.3e-97 360.9 464 45.3
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 3.5e-95 352.8 466 44.8
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 6.0e-95 352.1 466 42.5
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 1.0e-94 351.3 464 43.8
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 1.7e-94 350.5 471 46.9
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 1.7e-94 350.5 425 46.8
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 8.6e-94 348.2 502 43.6
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 2.3e-91 340.1 457 44.9
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 3.1e-91 339.7 480 47.1
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 3.1e-91 339.7 481 43.0
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 4.0e-91 339.3 469 45.8
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 2.0e-90 337.0 452 46.2
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 2.9e-89 333.2 484 44.0
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 3.7e-89 332.8 475 45.5
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 4.1e-88 329.3 479 43.8
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 2.1e-87 327.0 453 46.4
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 2.1e-87 327.0 469 44.8
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 2.3e-86 323.6 478 42.9
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 5.1e-86 322.4 457 43.1
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 8.6e-86 321.6 454 43.0
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 4.3e-85 319.3 509 39.9
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.2e-84 317.8 464 42.2
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.2e-84 317.8 464 42.7
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.6e-84 317.4 464 42.2
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 1.6e-84 317.4 464 43.8
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 2.8e-84 316.6 480 40.0
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 2.8e-84 316.6 470 43.0
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 3.6e-84 316.2 464 43.5
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 6.2e-84 315.5 464 43.1
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 1.1e-83 314.7 474 44.1
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 2.4e-83 313.5 464 42.5
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 2.0e-82 310.5 476 42.4
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 4.4e-82 309.3 465 43.0
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.9e-80 303.9 472 40.3
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 9.3e-80 301.6 473 39.1
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 4.6e-79 299.3 472 41.5
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 6.0e-79 298.9 479 39.9
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 7.8e-79 298.5 466 39.7
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 1.3e-78 297.7 446 44.2
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 1.7e-78 297.4 428 43.2
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 8.7e-78 295.0 479 39.0
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 8.7e-78 295.0 301 55.5
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 1.9e-77 293.9 459 40.5
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 3.3e-77 293.1 466 42.3
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 7.3e-77 292.0 460 42.6
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 1.6e-76 290.8 457 41.1
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 1.4e-75 287.7 464 40.1
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 5.3e-75 285.8 437 38.9
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 2.0e-74 283.9 467 39.4
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 4.4e-74 282.7 462 41.8
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 9.9e-74 281.6 466 40.8
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 1.7e-73 280.8 469 39.4
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 8.4e-73 278.5 427 41.9
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 1.1e-72 278.1 462 39.2
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 1.9e-72 277.3 462 39.0
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 4.2e-72 276.2 487 39.2
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 7.1e-72 275.4 466 39.9
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 9.3e-72 275.0 454 41.6
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 1.2e-71 274.6 464 40.3
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 2.1e-71 273.9 470 37.9
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 7.9e-71 271.9 467 38.8
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 3.3e-69 266.5 463 37.6
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 3.3e-69 266.5 464 39.2
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 2.8e-68 263.5 454 40.5
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 1.4e-67 261.2 467 39.4
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.4e-67 260.4 447 39.6
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 2.4e-67 260.4 500 38.6
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 2.0e-66 257.3 285 50.2
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 2.0e-66 257.3 440 39.5
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 3.8e-65 253.1 467 38.3
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 3.9e-62 243.0 451 37.7
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 3.9e-62 243.0 415 42.7
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 1.9e-61 240.7 284 48.2
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 2.6e-58 230.3 198 61.1
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 4.5e-58 229.6 417 36.0
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 1.0e-57 228.4 278 46.4
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 2.3e-54 217.2 221 54.3
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 2.5e-53 213.8 332 44.0
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 6.3e-52 209.1 349 42.7
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 7.2e-48 195.7 446 34.3
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 5.7e-45 186.0 462 32.7
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 7.4e-45 185.7 462 31.4
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 2.4e-43 180.6 293 39.9
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 1.5e-42 177.9 282 41.1
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 3.2e-40 170.2 309 41.1
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 7.2e-40 169.1 275 39.3
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 7.2e-40 169.1 461 30.8
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 3.3e-37 160.2 201 45.8
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 7.9e-31 139.0 188 47.9
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.8e-30 137.9 97 78.4
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 6.3e-28 129.4 128 55.5
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 5.3e-27 126.3 290 33.8
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 1.2e-23 115.2 77 70.1
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 1.4e-22 111.7 70 74.3
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 2.3e-22 110.9 70 72.9
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 2.3e-22 110.9 532 23.5
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 9.7e-21 105.5 61 73.8
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 1.3e-20 105.1 64 75.0
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 1.7e-20 104.8 64 73.4
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 2.2e-20 104.4 64 71.9
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 2.2e-20 104.4 70 67.1
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 6.3e-20 102.8 317 29.7
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 4.1e-19 100.1 103 47.6
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 1.7e-17 94.7 121 45.5
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 6.5e-17 92.8 76 59.2
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 3.2e-16 90.5 68 60.3
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 1.4e-14 85.1 62 62.9
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 2.3e-14 84.3 60 60.0
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 8.8e-14 82.4 72 48.6
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 1.5e-13 81.6 64 59.4
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 1.5e-13 81.6 65 53.8
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 2.6e-13 80.9 68 58.8
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 3.7e-12 77.0 256 27.3
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 4.8e-12 76.6 70 47.1
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 1.4e-11 75.1 53 69.8
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 1.8e-11 74.7 74 50.0
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 1.6e-10 71.6 65 50.8
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 1.3e-09 68.6 83 48.2
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.7e-09 68.2 74 51.4
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 2.2e-09 67.8 71 52.1
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 6.5e-09 66.2 68 42.6
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 1.9e-08 64.7 68 42.6
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 3.2e-08 63.9 65 44.6
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 1.6e-07 61.6 54 57.4
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 4.7e-07 60.1 67 49.3
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 1.4e-06 58.5 99 38.4
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 3.0e-06 57.4 72 43.1
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 5.2e-06 56.6 60 50.0
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 5.2e-06 56.6 52 48.1


User provided reference genes

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