Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004202g0020 Nicotiana tabacum HOM05D002653 ORTHO05D002623 0.0e+00 4545.3 2293 100.0
Solyc11g045160.3 Solanum lycopersicum HOM05D002653 ORTHO05D002623 0.0e+00 3718.7 2299 81.9
Sopen11g020620 Solanum pennellii HOM05D002653 ORTHO05D002623 0.0e+00 3715.6 2290 82.1
Nitab4.5_0006025g0010 Nicotiana tabacum HOM05D002653 ORTHO05D002623 0.0e+00 3707.5 2137 89.6
Peaxi162Scf00126g00051 Petunia axillaris HOM05D002653 ORTHO05D002623 0.0e+00 3674.4 2321 80.3
CAN.G690.1 Capsicum annuum HOM05D002653 ORTHO05D002623 0.0e+00 3608.9 2290 79.7
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 0.0e+00 2058.9 2350 49.0
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 0.0e+00 1760.0 2490 42.0
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 0.0e+00 1709.9 2342 43.0
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 0.0e+00 1704.9 2346 41.9
Lj4C825G3 Lonicera japonica HOM05D002653 ORTHO05D002623 0.0e+00 1681.0 2145 46.5
Duzib114G0204 Durio zibethinus HOM05D002653 ORTHO05D002623 0.0e+00 1673.3 2339 41.9
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 0.0e+00 1660.6 2335 41.8
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 0.0e+00 1657.1 2327 42.0
MD17G1156800 Malus domestica HOM05D002653 ORTHO05D002623 0.0e+00 1654.8 2341 41.2
Manes.11G165700 Manihot esculenta HOM05D002653 ORTHO05D002623 0.0e+00 1651.3 2336 41.7
Prupe.3G028500 Prunus persica HOM05D002653 ORTHO05D002623 0.0e+00 1651.0 2349 41.5
TWI34G1636 Tripterygium wilfordii HOM05D002653 ORTHO05D002623 0.0e+00 1648.6 2343 41.1
Manes.09G076300 Manihot esculenta HOM05D002653 ORTHO05D002623 0.0e+00 1643.6 2337 41.4
Thecc.01G150000 Theobroma cacao HOM05D002653 ORTHO05D002623 0.0e+00 1636.3 2346 41.1
vmacro03486 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 0.0e+00 1634.8 2233 43.0
RcHm_v2.0_Chr2g0148311 Rosa chinensis HOM05D002653 ORTHO05D002623 0.0e+00 1634.4 2347 41.1
Sabra16G0308200 Salix brachista HOM05D002653 ORTHO05D002623 0.0e+00 1634.0 2356 41.3
Potri.001G455600 Populus trichocarpa HOM05D002653 ORTHO05D002623 0.0e+00 1632.1 2353 41.4
Gohir.A05G394600 Gossypium hirsutum HOM05D002653 ORTHO05D002623 0.0e+00 1620.1 2342 41.0
MSTRG.8096 Avicennia marina HOM05D002653 ORTHO05D002623 0.0e+00 1614.7 2332 41.9
HanXRQChr07g0186761 Helianthus annuus HOM05D002653 ORTHO05D002623 0.0e+00 1613.2 2331 41.7
Ciclev10010886m.g Citrus clementina HOM05D002653 ORTHO05D002623 0.0e+00 1607.0 2126 42.7
Gorai.012G024100 Gossypium raimondii HOM05D002653 ORTHO05D002623 0.0e+00 1605.9 2342 40.5
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 0.0e+00 1598.9 2323 41.0
SalBow1G2769 Salvia bowleyana HOM05D002653 ORTHO05D002623 0.0e+00 1592.4 2410 40.1
QL04p064964 Quercus lobata HOM05D002653 ORTHO05D002623 0.0e+00 1591.6 2143 43.1
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 0.0e+00 1583.9 2348 40.4
SalBow1G3632 Salvia bowleyana HOM05D002653 ORTHO05D002623 0.0e+00 1583.2 2387 39.9
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 0.0e+00 1570.8 2339 39.8
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 0.0e+00 1568.5 2309 40.1
CSS0041142 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 0.0e+00 1567.0 1865 46.5
Cc11_g00280 Coffea canephora HOM05D002653 ORTHO05D002623 0.0e+00 1564.7 2095 43.0
FAN09G4442 Fragaria x ananassa HOM05D002653 ORTHO05D002623 0.0e+00 1564.7 2345 39.7
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 0.0e+00 1564.7 2337 39.8
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 0.0e+00 1561.6 2355 39.5
GSVIVG01019366001 Vitis vinifera HOM05D002653 ORTHO05D002623 0.0e+00 1526.9 2326 40.7
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 0.0e+00 1494.2 2355 39.4
CiPaw.06G000600 Carya illinoinensis HOM05D002653 ORTHO05D002623 0.0e+00 1492.6 2092 41.9
Haze_24505 Corylus avellana HOM05D002653 ORTHO05D002623 0.0e+00 1489.6 1965 43.6
SGA_v2.0_scaffold131G34416 Striga asiatica HOM05D002653 ORTHO05D002623 0.0e+00 1477.2 2449 38.4
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 0.0e+00 1471.4 2330 38.2
PGR044G0026 Punica granatum HOM05D002653 ORTHO05D002623 0.0e+00 1468.0 2322 38.4
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 0.0e+00 1464.9 2335 38.3
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 0.0e+00 1462.2 2337 38.1
Lalb_Chr01g0009381 Lupinus albus HOM05D002653 ORTHO05D002623 0.0e+00 1455.3 2351 38.2
ClCG03G010410 Citrullus lanatus HOM05D002653 ORTHO05D002623 0.0e+00 1440.2 2320 38.1
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 0.0e+00 1439.5 2289 38.4
CsaV3_1G044330 Cucumis sativus L. HOM05D002653 ORTHO05D002623 0.0e+00 1432.9 2323 37.7
Sed0003631 Sechium edule HOM05D002653 ORTHO05D002623 0.0e+00 1431.4 2335 37.7
Psat0s3513g0080 Pisum sativum HOM05D002653 ORTHO05D002623 0.0e+00 1399.4 2331 37.4
MBI12_g09298_MAGBIO Magnolia biondii HOM05D002653 ORTHO05D002623 0.0e+00 1398.6 2254 37.8
Medtr2g007250 Medicago truncatula HOM05D002653 ORTHO05D002623 0.0e+00 1394.4 2327 37.0
Lj4g0020533 Lotus japonicus HOM05D002653 ORTHO05D002623 0.0e+00 1386.7 2341 37.2
Eucgr.K01355 Eucalyptus grandis HOM05D002653 ORTHO05D002623 0.0e+00 1385.5 2069 40.1
LjContig00141g0016117 Lotus japonicus HOM05D002653 ORTHO05D002623 0.0e+00 1383.2 2353 37.3
TPR.G8155 Trifolium pratense HOM05D002653 ORTHO05D002623 0.0e+00 1382.9 2305 36.8
Aqoxy2G01525 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 0.0e+00 1369.4 2311 37.6
AL6G36330 Arabidopsis lyrata HOM05D002653 ORTHO05D002623 0.0e+00 1325.1 2327 36.0
arahy.Tifrunner.gnm1.ann1.GW217K Arachis hypogaea HOM05D002653 ORTHO05D002623 0.0e+00 1323.1 2317 36.4
AT5G24740 Arabidopsis thaliana HOM05D002653 ORTHO05D002623 0.0e+00 1307.7 2329 36.1
Carub.0006s2259 Capsella rubella HOM05D002653 ORTHO05D002623 0.0e+00 1303.1 2349 35.6
C07p42990 Brassica napus HOM05D002653 ORTHO05D002623 0.0e+00 1300.0 2332 35.4
THA.LOC104814962 Tarenaya hassleriana HOM05D002653 ORTHO05D002623 0.0e+00 1290.8 2325 36.0
BolC7t44828H Brassica oleracea HOM05D002653 ORTHO05D002623 0.0e+00 1290.4 2329 35.4
Migut.L00839 Erythranthe guttata HOM05D002653 ORTHO05D002623 0.0e+00 1289.6 2004 40.7
A06p35550 Brassica napus HOM05D002653 ORTHO05D002623 0.0e+00 1288.5 2333 35.2
BraA06t26480Z Brassica rapa HOM05D002653 ORTHO05D002623 0.0e+00 1285.0 2328 35.3
Thhalv10003500m.g Eutrema salsugineum HOM05D002653 ORTHO05D002623 0.0e+00 1271.1 2337 35.4
BcaNung01253 Brassica carinata HOM05D002653 ORTHO05D002623 0.0e+00 1270.8 2310 35.3
MELO3C010033.2 Cucumis melo HOM05D002653 ORTHO05D002623 0.0e+00 1263.1 2177 36.5
Aa31LG11G3960 Aethionema arabicum HOM05D002653 ORTHO05D002623 0.0e+00 1260.7 2338 35.2
AUR62013467 Chenopodium quinoa HOM05D002653 ORTHO05D002623 0.0e+00 1254.2 2399 35.3
ATR1155G033 Amborella trichopoda HOM05D002653 ORTHO05D002623 0.0e+00 1248.8 2398 35.0
TAR624G1146 Trochodendron aralioides HOM05D002653 ORTHO05D002623 0.0e+00 1216.1 1450 46.8
CARHR188760 Cardamine hirsuta HOM05D002653 ORTHO05D002623 0.0e+00 1192.2 2114 36.2
VMungo0251G0195 Vigna mungo HOM05D002653 ORTHO05D002623 0.0e+00 1179.5 2051 36.1
Sp2g22690 Schrenkiella parvula HOM05D002653 ORTHO05D002623 0.0e+00 1082.0 1844 36.1
AUR62026805 Chenopodium quinoa HOM05D002653 ORTHO05D002623 2.3e-305 1053.5 2212 34.1
Phvul.002G328600 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 1.3e-295 1021.1 1474 40.2
Atru.chr8.1038_Atru.chr8.1039 Acer truncatum HOM05D002653 ORTHO05D002623 3.2e-270 936.8 917 53.3
Cpa.g.sc119.1 Carica papaya HOM05D002653 ORTHO05D002623 7.3e-267 925.6 1573 36.7
Zm00001eb260890 Zea mays HOM05D002653 ORTHO05D002623 2.2e-263 914.1 2092 30.5
Gohir.D04G020351 Gossypium hirsutum HOM05D002653 ORTHO05D002623 1.3e-242 845.1 865 50.2
arahy.Tifrunner.gnm1.ann1.21MRAZ Arachis hypogaea HOM05D002653 ORTHO05D002623 2.9e-231 807.4 930 47.4
Oeu013191.1 Olea europaea HOM05D002653 ORTHO05D002623 7.9e-197 693.0 1032 41.0
Atru.chr8.1040 Acer truncatum HOM05D002653 ORTHO05D002623 4.8e-178 630.6 1112 36.2
Ca_27667_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 3.6e-165 587.8 791 41.7
Pp3c15_25690 Physcomitrium patens HOM05D002653 ORTHO05D002623 4.9e-154 550.8 1717 28.2
Mapoly0009s0011 Marchantia polymorpha HOM05D002653 ORTHO05D002623 1.5e-150 539.3 1801 27.8
unitig_8.g3108 Utricularia gibba HOM05D002653 ORTHO05D002623 2.8e-149 535.0 623 46.9
HPP92_001360 Vanilla planifolia HOM05D002653 ORTHO05D002623 1.3e-143 516.2 2213 25.3
PSO782G1285 Papaver somniferum HOM05D002653 ORTHO05D002623 2.2e-138 498.8 1243 29.9
TAR624G0800 Trochodendron aralioides HOM05D002653 ORTHO05D002623 1.9e-129 469.2 847 37.9
SMO353G0260 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 5.4e-129 467.6 984 32.2
Migut.L00525 Erythranthe guttata HOM05D002653 ORTHO05D002623 3.5e-128 464.9 440 54.8
SEGI_36671 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 6.9e-124 450.7 803 37.7
Migut.L00786 Erythranthe guttata HOM05D002653 ORTHO05D002623 5.6e-118 431.0 422 54.7
Nn7g38446 Nelumbo nucifera HOM05D002653 ORTHO05D002623 2.2e-114 419.1 991 31.6
Hma1.2p1_2738F.1_g327720 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 3.8e-114 418.3 593 44.2
Cpa.g.sc119.2 Carica papaya HOM05D002653 ORTHO05D002623 1.1e-89 337.0 360 49.7
Gohir.D04G020301 Gossypium hirsutum HOM05D002653 ORTHO05D002623 1.7e-77 296.6 640 34.2
Phvul.002G234304 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 4.8e-77 295.0 728 29.5
CBR_g47049 Chara braunii HOM05D002653 ORTHO05D002623 3.1e-68 265.8 926 27.0
RcHm_v2.0_Chr5g0051461 Rosa chinensis HOM05D002653 ORTHO05D002623 2.0e-59 236.5 278 47.1
HPP92_001355 Vanilla planifolia HOM05D002653 ORTHO05D002623 1.7e-53 216.9 183 54.6
Ca_14757_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 1.1e-52 214.2 629 27.2
Ca_14756_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 1.8e-47 196.8 131 67.2
Cc11_g00290 Coffea canephora HOM05D002653 ORTHO05D007806 9.8e-46 191.0 208 47.6
Migut.L00787 Erythranthe guttata HOM05D002653 ORTHO05D002623 1.3e-42 180.6 193 51.3
Migut.L00840 Erythranthe guttata HOM05D002653 ORTHO05D002623 5.0e-42 178.7 195 50.3
Lsat_1_v5_gn_1_69101 Lactuca sativa HOM05D002653 ORTHO05D002623 1.1e-31 144.4 110 61.8
CDE12G0934 Ceratophyllum demersum HOM05D002653 ORTHO05D002623 1.8e-31 143.7 192 40.6
MELO3C010026.2 Cucumis melo HOM05D002653 ORTHO05D002623 5.8e-30 138.7 94 63.8
SMO302G0008 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 5.8e-30 138.7 559 25.4
Oeu013190.1 Olea europaea HOM05D002653 ORTHO05D002623 1.3e-29 137.5 131 54.2
Lsat_1_v5_gn_6_118061 Lactuca sativa HOM05D002653 ORTHO05D002623 8.3e-29 134.8 129 54.3
SEGI_29400 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 1.1e-28 134.4 781 22.7
Lj4A824T16 Lonicera japonica HOM05D002653 ORTHO05D002623 1.3e-26 127.5 108 60.2
CSS0026519 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 3.0e-26 126.3 110 59.1
CSS0038262 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 3.0e-26 126.3 110 59.1
Hma1.2p1_1074F.1_g254370 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 1.1e-25 124.4 92 66.3
Hma1.2p1_1074F.1_g254376 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 1.1e-25 124.4 92 66.3
vmacro03485 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 2.5e-25 123.2 255 32.2
Ca_14758_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 5.6e-25 122.1 145 47.6
QL04p064992 Quercus lobata HOM05D002653 ORTHO05D002623 4.7e-24 119.0 111 55.9
CiPaw.06G000500 Carya illinoinensis HOM05D002653 ORTHO05D002623 4.0e-23 115.9 119 51.3
Ciclev10013321m.g Citrus clementina HOM05D002653 ORTHO05D002623 6.8e-23 115.2 100 57.0
VMungo0251G1383 Vigna mungo HOM05D002653 ORTHO05D002623 8.9e-23 114.8 161 41.0
HPP92_001362 Vanilla planifolia HOM05D002653 ORTHO05D002623 4.4e-22 112.5 178 36.0
Hma1.2p1_2738F.1_g327710 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 7.6e-22 111.7 94 57.4
Phvul.002G234312 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 2.7e-19 103.2 94 57.4
Cpa.g.c28352.2 Carica papaya HOM05D002653 ORTHO05D002623 3.0e-18 99.8 78 61.5
SEGI_23454 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 3.1e-15 89.7 99 46.5
Psat6g120600 Pisum sativum HOM05D001580 ORTHO05D002623 6.9e-15 88.6 93 52.7
PGSC0003DMG400022861 Solanum tuberosum HOM05D002653 ORTHO05D002623 1.2e-14 87.8 43 90.7
Lsat_1_v5_gn_9_71520 Lactuca sativa HOM05D002653 ORTHO05D002623 2.0e-14 87.0 74 54.1
Lsat_1_v5_gn_6_59520 Lactuca sativa HOM05D002372 ORTHO05D002623 3.4e-14 86.3 72 56.9
Lsat_1_v5_gn_6_103800 Lactuca sativa HOM05D003170 ORTHO05D003611 3.8e-13 82.8 99 45.5
arahy.Tifrunner.gnm1.ann1.8RHS4X Arachis hypogaea HOM05D002653 ORTHO05D002623 8.4e-13 81.6 82 56.1
QL02p009774 Quercus lobata HOM05D001890 ORTHO05D002623 1.4e-12 80.9 122 41.8
CBR_g47048 Chara braunii HOM05D000019 ORTHO05D000353 2.7e-11 76.6 177 28.8
Os08g0116700 Oryza sativa ssp. japonica HOM05D002653 ORTHO05D002623 2.7e-11 76.6 120 39.2
SMO353G0198 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 3.0e-10 73.2 313 26.2
Ah.05g169290 Amaranthus hybridus HOM05D002653 ORTHO05D002623 3.9e-10 72.8 59 59.3
Hma1.2p1_1074F.1_g254360 Hydrangea macrophylla HOM05D002653 ORTHO05D036411 8.7e-10 71.6 102 42.2
Hma1.2p1_1074F.1_g254373 Hydrangea macrophylla HOM05D002653 ORTHO05D036411 8.7e-10 71.6 102 42.2
QL02p032103 Quercus lobata HOM05D003355 ORTHO05D002623 8.7e-10 71.6 57 63.2
Lsat_1_v5_gn_8_138540 Lactuca sativa HOM05D002028 ORTHO05D002474 1.3e-08 67.8 59 57.6
Phvul.002G234308 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 1.6e-08 67.4 91 37.4
Lj4A824G18 Lonicera japonica HOM05D002653 ORTHO05D002623 3.6e-08 66.2 51 62.7
HPP92_012168 Vanilla planifolia HOM05D017293 ORTHO05D019386 4.8e-08 65.9 174 29.3
MELO3C029604.2 Cucumis melo HOM05D002653 ORTHO05D002623 1.4e-07 64.3 40 62.5
Lsat_1_v5_gn_7_107220 Lactuca sativa HOM05D002653 ORTHO05D002623 9.0e-07 61.6 117 29.1
CBR_g18614 Chara braunii HOM05D002653 ORTHO05D002623 1.5e-06 60.8 165 29.1
Nn7g38445 Nelumbo nucifera HOM05D002653 ORTHO05D036411 1.5e-06 60.8 93 39.8


User provided reference genes

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