Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 2573.9 1302 100.0
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 2338.9 1328 91.1
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 2187.9 1372 83.6
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 2176.0 1387 81.8
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1632.8 957 87.9
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1606.3 1396 61.1
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1557.0 1415 58.8
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1553.1 1393 59.9
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1528.1 1340 59.7
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1513.0 1392 58.0
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 0.0e+00 1491.9 853 89.2
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1481.5 1388 57.4
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1476.8 1361 58.0
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1456.4 1388 56.5
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1439.1 1390 56.0
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1434.5 1387 55.9
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1431.0 1396 54.9
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1417.1 1376 55.8
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1395.2 1400 53.5
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1392.5 1393 55.3
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1387.5 1392 53.5
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1380.5 1403 54.0
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1380.2 1379 55.0
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1365.9 1433 53.2
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1352.4 1390 53.5
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1334.7 1380 53.2
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1328.2 1393 52.6
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1327.0 1396 50.9
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1326.6 1398 52.0
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1323.9 1408 51.6
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1321.2 1377 52.4
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1318.5 1400 51.7
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1318.1 1400 52.0
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1316.6 1397 52.0
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1310.8 1487 49.6
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1309.3 1392 51.7
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1307.7 1392 50.4
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1307.4 1371 51.6
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1306.2 1405 51.9
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1279.6 1372 51.7
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1273.5 1403 50.1
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1273.1 1371 50.6
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1262.7 1389 51.0
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1260.4 1391 49.6
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1256.1 1392 49.6
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1253.0 1391 49.7
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1252.3 1379 49.4
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1242.6 1389 49.2
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1241.1 1327 51.6
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1239.6 1397 48.7
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1238.0 1386 48.6
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1234.9 1390 49.0
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1232.2 1386 49.3
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1226.8 1386 49.3
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1220.3 1403 47.5
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1217.2 967 65.0
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1214.5 1385 49.1
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1213.7 1399 48.2
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1211.4 1396 47.4
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1209.5 1394 49.4
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1208.4 1387 48.5
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1203.0 1400 47.7
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1203.0 1400 47.7
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1197.2 1403 47.3
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1194.9 1394 47.8
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1166.8 1056 59.5
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1165.6 1180 53.6
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1160.2 1084 57.7
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1140.2 1400 46.2
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1130.2 1399 45.5
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1127.1 1392 45.8
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1125.9 1116 54.6
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1123.2 1396 45.3
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1122.5 1402 45.1
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1121.7 1397 45.3
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1110.9 1392 45.2
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1108.6 1423 44.5
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1107.4 1396 45.1
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1098.6 1636 40.2
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1097.8 1399 44.9
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1096.6 1426 45.1
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1096.3 1425 44.2
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1095.9 1428 45.8
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1093.6 1396 45.1
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1078.5 1401 44.2
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 9.7e-309 1063.9 1378 43.5
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 2.0e-301 1039.6 1377 45.0
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 1.7e-292 1010.0 1049 52.6
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 3.3e-288 995.7 1417 42.4
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 8.0e-287 991.1 1183 46.7
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 7.5e-277 958.0 995 52.6
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 2.1e-266 923.3 1383 39.5
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 5.1e-217 759.2 1142 40.9
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 6.3e-199 699.1 966 41.9
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 7.2e-195 685.6 1011 40.6
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 4.7e-194 682.9 969 42.4
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 1.6e-189 667.9 1402 33.6
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 2.5e-187 660.6 1396 33.5
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 3.8e-180 636.7 1420 33.3
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.0e-177 627.1 626 54.5
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 4.0e-177 626.7 600 55.8
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 1.6e-162 578.2 460 64.6
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 5.8e-160 569.7 477 63.1
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 8.3e-159 565.8 1015 37.1
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 4.1e-158 563.5 1010 37.3
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 3.0e-156 557.4 1009 37.1
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 4.0e-153 547.0 1262 32.2
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 6.8e-153 546.2 1013 38.5
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 1.1e-145 522.3 457 59.5
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 2.1e-141 508.1 637 46.5
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 5.6e-131 473.4 473 54.8
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 2.0e-128 464.9 304 80.3
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.9e-126 458.4 569 45.5
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 1.1e-118 432.6 419 58.2
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 1.3e-116 425.6 527 48.2
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 6.9e-113 413.3 454 52.4
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 1.0e-103 382.9 448 48.9
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 2.2e-98 365.2 495 41.0
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-94 352.8 1010 28.8
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 8.5e-87 326.6 452 40.3
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 8.8e-84 316.6 790 31.0
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 2.0e-72 278.9 387 40.6
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 3.8e-71 274.6 302 48.7
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 2.1e-69 268.9 274 53.6
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 7.5e-67 260.4 471 34.8
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 1.2e-64 253.1 357 41.2
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 5.9e-64 250.8 306 44.1
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.0e-63 250.0 209 55.5
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.2e-59 236.5 294 45.2
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 1.2e-56 226.5 339 42.8
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 2.0e-56 225.7 259 47.1
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 2.0e-56 225.7 248 48.4
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.7e-55 222.6 324 38.0
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 5.7e-51 207.6 309 39.2
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 2.0e-43 182.6 217 46.5
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 3.4e-43 181.8 271 41.3
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.1e-37 162.5 332 35.8
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 2.8e-37 162.2 223 42.2
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 1.8e-36 159.5 277 37.9
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 9.9e-35 153.7 197 42.1
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 3.7e-34 151.8 193 45.6
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 1.0e-31 143.7 190 44.7
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 2.5e-30 139.0 116 62.9
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 7.6e-27 127.5 198 38.9
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 9.9e-27 127.1 149 43.6
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 7.1e-25 120.9 97 58.8
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 3.3e-22 112.1 93 54.8
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 6.2e-21 107.8 98 59.2
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 3.1e-20 105.5 98 58.2
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 4.9e-18 98.2 95 52.6
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 4.2e-17 95.1 82 57.3
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 8.1e-13 80.9 231 29.9
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 1.8e-12 79.7 308 25.3
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 5.3e-12 78.2 61 57.4
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 4.5e-11 75.1 68 54.4
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 3.2e-09 68.9 72 51.4
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 1.6e-08 66.6 175 29.7
BcaC02g08127 Brassica carinata HOM05D001082 ORTHO05D005120 7.4e-06 57.8 98 32.7


User provided reference genes

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