Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004047g0040 Nicotiana tabacum HOM05D003445 ORTHO05D045149 9.5e-59 229.9 114 100.0
Nitab4.5_0010505g0010 Nicotiana tabacum HOM05D003445 ORTHO05D004114 3.8e-23 111.7 58 91.4
PGSC0003DMG400027335 Solanum tuberosum HOM05D003445 ORTHO05D004114 3.5e-21 105.1 58 84.5
Sopen11g003810 Solanum pennellii HOM05D003445 ORTHO05D004114 7.8e-21 104.0 58 82.8
Peaxi162Scf00409g00218 Petunia axillaris HOM05D003445 ORTHO05D004114 1.7e-20 102.8 58 84.5
Solyc11g007940.2 Solanum lycopersicum HOM05D003445 ORTHO05D004114 3.9e-20 101.7 58 81.0
Nitab4.5_0009159g0020 Nicotiana tabacum HOM05D003445 ORTHO05D004114 8.7e-20 100.5 58 82.8
CAN.G135.24 Capsicum annuum HOM05D003445 ORTHO05D004114 1.3e-18 96.7 58 79.3
Peaxi162Scf00253g00318 Petunia axillaris HOM05D003445 ORTHO05D004114 1.3e-18 96.7 58 77.6
Thecc.10G089500 Theobroma cacao HOM05D003445 ORTHO05D004114 1.6e-18 96.3 58 77.6
Gohir.A10G200400 Gossypium hirsutum HOM05D003445 ORTHO05D004114 3.6e-18 95.1 58 77.6
Gohir.D10G208300 Gossypium hirsutum HOM05D003445 ORTHO05D004114 4.8e-18 94.7 58 77.6
Gorai.011G234000 Gossypium raimondii HOM05D003445 ORTHO05D004114 4.8e-18 94.7 58 77.6
COL.COLO4_02905 Corchorus olitorius HOM05D003445 ORTHO05D004114 6.2e-18 94.4 58 75.9
Duzib114G0852 Durio zibethinus HOM05D003445 ORTHO05D004114 6.2e-18 94.4 58 77.6
Duzib128G1656 Durio zibethinus HOM05D003445 ORTHO05D004114 6.2e-18 94.4 58 77.6
Solyc05g055450.3 Solanum lycopersicum HOM05D003445 ORTHO05D004114 6.2e-18 94.4 55 81.8
Sopen05g033900 Solanum pennellii HOM05D003445 ORTHO05D004114 6.2e-18 94.4 55 81.8
PGSC0003DMG400023482 Solanum tuberosum HOM05D003445 ORTHO05D004114 6.2e-18 94.4 55 81.8
Rhsim09G0145400 Rhododendron simsii HOM05D003445 ORTHO05D004114 1.1e-17 93.6 54 81.5
Lalb_Chr02g0151111 Lupinus albus HOM05D003445 ORTHO05D004114 1.4e-17 93.2 54 81.5
Lalb_Chr06g0170031 Lupinus albus HOM05D003445 ORTHO05D004114 1.4e-17 93.2 54 81.5
QL08p053096 Quercus lobata HOM05D003445 ORTHO05D004114 1.8e-17 92.8 54 81.5
CANSAT56G2777 Cannabis sativa HOM05D003445 ORTHO05D004114 4.0e-17 91.7 89 56.2
Sc09g0005840 Simmondsia chinensis HOM05D003445 ORTHO05D004114 5.3e-17 91.3 58 72.4
TWI38G0253 Tripterygium wilfordii HOM05D003445 ORTHO05D004114 5.3e-17 91.3 58 75.9
Nitab4.5_0000096g0210 Nicotiana tabacum HOM05D003445 ORTHO05D004114 9.0e-17 90.5 55 78.2
arahy.Tifrunner.gnm1.ann1.2WVS1U Arachis hypogaea HOM05D003445 ORTHO05D004114 1.2e-16 90.1 54 75.9
arahy.Tifrunner.gnm1.ann1.68AZQV Arachis hypogaea HOM05D003445 ORTHO05D004114 1.2e-16 90.1 54 75.9
CSS0001382 Camellia sinensis var. sinensis HOM05D003445 ORTHO05D004114 1.2e-16 90.1 54 77.8
Dinv31261 Davidia involucrata HOM05D003445 ORTHO05D045149 1.2e-16 90.1 55 78.2
Lalb_Chr19g0129371 Lupinus albus HOM05D003445 ORTHO05D004114 1.2e-16 90.1 54 75.9
PGR142G3968 Punica granatum HOM05D003445 ORTHO05D004114 1.2e-16 90.1 61 73.8
vmacro10262 Vaccinium macrocarpon HOM05D003445 ORTHO05D004114 1.2e-16 90.1 72 62.5
Medtr1g090773 Medicago truncatula HOM05D003445 ORTHO05D004114 1.5e-16 89.7 58 70.7
Cfa001777 Carpinus fangiana HOM05D003445 ORTHO05D004114 2.0e-16 89.4 54 77.8
Haze_16775 Corylus avellana HOM05D003445 ORTHO05D004114 2.0e-16 89.4 54 77.8
Dinv36360 Davidia involucrata HOM05D003445 ORTHO05D004114 2.0e-16 89.4 54 79.6
Os02g0822300 Oryza sativa ssp. japonica HOM05D003445 ORTHO05D004114 2.0e-16 89.4 54 81.5
Manes.11G087166 Manihot esculenta HOM05D003445 ORTHO05D004114 2.6e-16 89.0 54 77.8
Nitab4.5_0002692g0090 Nicotiana tabacum HOM05D003445 ORTHO05D004114 2.6e-16 89.0 55 76.4
TPR.G37741 Trifolium pratense HOM05D003445 ORTHO05D004114 2.6e-16 89.0 54 77.8
CSS0030750 Camellia sinensis var. sinensis HOM05D003445 ORTHO05D004114 3.4e-16 88.6 54 75.9
Gorai.009G308500 Gossypium raimondii HOM05D003445 ORTHO05D004114 3.4e-16 88.6 58 74.1
Glyma.10G198300 Glycine max HOM05D003445 ORTHO05D004114 4.5e-16 88.2 54 75.9
Hma1.2p1_1009F.1_g247280 Hydrangea macrophylla HOM05D003445 ORTHO05D004114 4.5e-16 88.2 54 77.8
Prupe.2G093900 Prunus persica HOM05D003445 ORTHO05D004114 4.5e-16 88.2 54 75.9
TWI15G0156 Tripterygium wilfordii HOM05D003445 ORTHO05D004114 4.5e-16 88.2 54 79.6
CiPaw.02G170100 Carya illinoinensis HOM05D003445 ORTHO05D004114 5.8e-16 87.8 54 75.9
Ca_10454_v3 Cicer arietinum L. HOM05D003445 ORTHO05D004114 5.8e-16 87.8 54 74.1
Gohir.A06G168900 Gossypium hirsutum HOM05D003445 ORTHO05D004114 5.8e-16 87.8 58 72.4
Gohir.D06G176400 Gossypium hirsutum HOM05D003445 ORTHO05D004114 5.8e-16 87.8 58 72.4
Gorai.010G207600 Gossypium raimondii HOM05D003445 ORTHO05D004114 5.8e-16 87.8 58 72.4
Lalb_Chr01g0010281 Lupinus albus HOM05D003445 ORTHO05D004114 5.8e-16 87.8 54 74.1
Actinidia38891 Actinidia chinensis HOM05D003445 ORTHO05D004114 7.6e-16 87.4 54 77.8
CiPaw.01G265300 Carya illinoinensis HOM05D003445 ORTHO05D004114 7.6e-16 87.4 54 75.9
FAN03G1234 Fragaria x ananassa HOM05D003445 ORTHO05D004114 9.9e-16 87.0 54 75.9
Glyma.20G191700 Glycine max HOM05D003445 ORTHO05D004114 9.9e-16 87.0 54 75.9
Gohir.D05G292300 Gossypium hirsutum HOM05D003445 ORTHO05D004114 9.9e-16 87.0 58 72.4
Zm00001eb259230 Zea mays HOM05D003445 ORTHO05D004114 9.9e-16 87.0 54 75.9
Actinidia34789 Actinidia chinensis HOM05D003445 ORTHO05D004114 1.3e-15 86.7 54 77.8
Eucgr.G02737 Eucalyptus grandis HOM05D003445 ORTHO05D004114 1.3e-15 86.7 54 74.1
MD02G1237900 Malus domestica HOM05D003445 ORTHO05D004114 1.3e-15 86.7 54 74.1
MD02G1241800 Malus domestica HOM05D003445 ORTHO05D004114 1.3e-15 86.7 54 74.1
TAR633G1158 Trochodendron aralioides HOM05D003445 ORTHO05D004114 1.3e-15 86.7 54 75.9
Zm00001eb191030 Zea mays HOM05D003445 ORTHO05D004114 1.3e-15 86.7 54 74.1
Gohir.A05G291200 Gossypium hirsutum HOM05D003445 ORTHO05D004114 1.7e-15 86.3 58 72.4
MD07G1074100 Malus domestica HOM05D003445 ORTHO05D004114 1.7e-15 86.3 54 72.2
SalBow4G0167 Salvia bowleyana HOM05D003445 ORTHO05D004114 1.7e-15 86.3 55 74.5
Hund22304 Selenicereus undatus HOM05D003445 ORTHO05D004114 1.7e-15 86.3 58 70.7
TWI63G1099 Tripterygium wilfordii HOM05D003445 ORTHO05D004114 1.7e-15 86.3 54 77.8
GSVIVG01016165001 Vitis vinifera HOM05D003445 ORTHO05D004114 1.7e-15 86.3 54 75.9
Lj5g0011720 Lotus japonicus HOM05D003445 ORTHO05D004114 2.2e-15 85.9 54 74.1
Psat6g173360 Pisum sativum HOM05D003445 ORTHO05D004114 2.2e-15 85.9 54 72.2
Atru.chr12.903 Acer truncatum HOM05D003445 ORTHO05D004114 2.9e-15 85.5 54 75.9
Cpa.g.sc53.166 Carica papaya HOM05D003445 ORTHO05D004114 2.9e-15 85.5 58 72.4
AUR62041795 Chenopodium quinoa HOM05D003445 ORTHO05D004114 2.9e-15 85.5 58 72.4
FvH4_7g06600 Fragaria vesca HOM05D003445 ORTHO05D004114 2.9e-15 85.5 54 74.1
FAN01G0566 Fragaria x ananassa HOM05D003445 ORTHO05D004114 2.9e-15 85.5 54 74.1
FAN06G2771 Fragaria x ananassa HOM05D003445 ORTHO05D004114 2.9e-15 85.5 54 74.1
FAN10G3468 Fragaria x ananassa HOM05D003445 ORTHO05D004114 2.9e-15 85.5 54 74.1
PSO339G2738 Papaver somniferum HOM05D003445 ORTHO05D004114 2.9e-15 85.5 58 67.2
RcHm_v2.0_Chr1g0335271 Rosa chinensis HOM05D003445 ORTHO05D004114 2.9e-15 85.5 54 74.1
PSO063G2817 Papaver somniferum HOM05D003445 ORTHO05D004114 3.8e-15 85.1 58 67.2
THA.LOC104823197 Tarenaya hassleriana HOM05D003445 ORTHO05D004114 3.8e-15 85.1 54 75.9
Oeu060276.1 Olea europaea HOM05D003445 ORTHO05D004114 4.9e-15 84.7 54 77.8
PSO339G4614 Papaver somniferum HOM05D003445 ORTHO05D004114 4.9e-15 84.7 54 75.9
PSO801G0704 Papaver somniferum HOM05D003445 ORTHO05D004114 4.9e-15 84.7 54 75.9
Phvul.007G141100 Phaseolus vulgaris HOM05D003445 ORTHO05D004114 4.9e-15 84.7 54 74.1
VMungo0720G0843 Vigna mungo HOM05D003445 ORTHO05D004114 4.9e-15 84.7 54 74.1
Cc02_g10580 Coffea canephora HOM05D003445 ORTHO05D004114 6.4e-15 84.3 55 74.5
THA.LOC104826969 Tarenaya hassleriana HOM05D003445 ORTHO05D004114 6.4e-15 84.3 54 75.9
Nn3g19092 Nelumbo nucifera HOM05D003445 ORTHO05D004114 8.4e-15 84.0 54 74.1
Nn6g35202 Nelumbo nucifera HOM05D003445 ORTHO05D004114 8.4e-15 84.0 54 75.9
TAR623G1080 Trochodendron aralioides HOM05D003445 ORTHO05D004114 8.4e-15 84.0 54 74.1
ClCG05G021420 Citrullus lanatus HOM05D003445 ORTHO05D004114 1.1e-14 83.6 54 70.4
TAR369G0057 Trochodendron aralioides HOM05D003445 ORTHO05D004114 1.1e-14 83.6 54 74.1
Aqoxy2G01633 Aquilegia oxysepala HOM05D003445 ORTHO05D004114 1.4e-14 83.2 54 72.2
EL10As9g23938 Beta vulgaris HOM05D003445 ORTHO05D004114 1.4e-14 83.2 58 70.7
AUR62041269 Chenopodium quinoa HOM05D003445 ORTHO05D004114 1.4e-14 83.2 58 70.7
Sed0013139 Sechium edule HOM05D003445 ORTHO05D004114 1.4e-14 83.2 54 68.5
Aa31LG11G5300 Aethionema arabicum HOM05D003445 ORTHO05D004114 1.9e-14 82.8 54 72.2
Sabra10G0178800 Salix brachista HOM05D003445 ORTHO05D004114 2.4e-14 82.4 54 72.2
Potri.010G230500 Populus trichocarpa HOM05D003445 ORTHO05D004114 3.2e-14 82.0 54 74.1
unitig_899.g15058 Utricularia gibba HOM05D003445 ORTHO05D004114 3.2e-14 82.0 54 75.9
AL6G14070 Arabidopsis lyrata HOM05D003445 ORTHO05D004114 4.2e-14 81.6 54 72.2
AT5G04430 Arabidopsis thaliana HOM05D003445 ORTHO05D004114 4.2e-14 81.6 54 72.2
BcaB01g05898 Brassica carinata HOM05D003445 ORTHO05D004114 4.2e-14 81.6 54 72.2
C03p02050 Brassica napus HOM05D003445 ORTHO05D004114 4.2e-14 81.6 54 72.2
BolC3t12758H Brassica oleracea HOM05D003445 ORTHO05D004114 4.2e-14 81.6 54 72.2
DCAR_019061 Daucus carota HOM05D003445 ORTHO05D004114 4.2e-14 81.6 58 63.8
Sed0007053 Sechium edule HOM05D003445 ORTHO05D004114 4.2e-14 81.6 54 68.5
BcaC06g32151 Brassica carinata HOM05D003445 ORTHO05D004114 5.4e-14 81.3 54 70.4
A03p01680 Brassica napus HOM05D003445 ORTHO05D004114 5.4e-14 81.3 54 70.4
BraA03t09543Z Brassica rapa HOM05D003445 ORTHO05D004114 5.4e-14 81.3 54 70.4
MELO3C012385.2 Cucumis melo HOM05D003445 ORTHO05D004114 5.4e-14 81.3 54 68.5
CsaV3_5G035820 Cucumis sativus L. HOM05D003445 ORTHO05D004114 5.4e-14 81.3 54 68.5
MSTRG.8120 Avicennia marina HOM05D003445 ORTHO05D004114 7.1e-14 80.9 54 72.2
CAN.G1891.4 Capsicum annuum HOM05D003445 ORTHO05D004114 7.1e-14 80.9 55 69.1
CDE06G1707 Ceratophyllum demersum HOM05D003445 ORTHO05D004114 7.1e-14 80.9 55 69.1
BcaB05g21762 Brassica carinata HOM05D003445 ORTHO05D004114 9.3e-14 80.5 54 70.4
BcaC03g12945 Brassica carinata HOM05D003445 ORTHO05D004114 9.3e-14 80.5 54 70.4
A10p31650 Brassica napus HOM05D003445 ORTHO05D004114 9.3e-14 80.5 54 70.4
C02p01930 Brassica napus HOM05D003445 ORTHO05D004114 9.3e-14 80.5 54 70.4
C09p72320 Brassica napus HOM05D003445 ORTHO05D004114 9.3e-14 80.5 54 70.4
BolC2t06150H Brassica oleracea HOM05D003445 ORTHO05D004114 9.3e-14 80.5 54 70.4
BolC9t59976H Brassica oleracea HOM05D003445 ORTHO05D004114 9.3e-14 80.5 54 70.4
BraA02t04812Z Brassica rapa HOM05D003445 ORTHO05D004114 9.3e-14 80.5 54 70.4
BraA10t45211Z Brassica rapa HOM05D003445 ORTHO05D004114 9.3e-14 80.5 54 70.4
Carub.0006s0337 Capsella rubella HOM05D003445 ORTHO05D004114 9.3e-14 80.5 54 70.4
CARHR208830 Cardamine hirsuta HOM05D003445 ORTHO05D004114 9.3e-14 80.5 54 70.4
unitig_736.g22325 Utricularia gibba HOM05D003445 ORTHO05D004114 9.3e-14 80.5 58 67.2
Aqoxy1G01069 Aquilegia oxysepala HOM05D003445 ORTHO05D004114 1.2e-13 80.1 58 65.5
SalBow6G4419 Salvia bowleyana HOM05D003445 ORTHO05D004114 1.6e-13 79.7 63 65.1
CDE03G0484 Ceratophyllum demersum HOM05D003445 ORTHO05D004114 2.7e-13 79.0 55 67.3
ATR0043G023 Amborella trichopoda HOM05D003445 ORTHO05D004114 3.5e-13 78.6 61 59.0
Thhalv10014068m.g Eutrema salsugineum HOM05D003445 ORTHO05D004114 3.5e-13 78.6 54 68.5
Sp6g38310 Schrenkiella parvula HOM05D003445 ORTHO05D004114 3.5e-13 78.6 54 68.5
HPP92_014722 Vanilla planifolia HOM05D003445 ORTHO05D004114 3.5e-13 78.6 54 66.7
Potri.008G030700 Populus trichocarpa HOM05D003445 ORTHO05D004114 4.6e-13 78.2 55 67.3
Sabra08G0020500 Salix brachista HOM05D003445 ORTHO05D004114 6.0e-13 77.8 55 67.3
MSTRG.27501 Avicennia marina HOM05D003445 ORTHO05D004114 1.3e-12 76.6 54 68.5
Oeu060277.5 Olea europaea HOM05D003445 ORTHO05D004114 1.8e-12 76.3 53 71.7
THA.LOC104816445 Tarenaya hassleriana HOM05D003445 ORTHO05D004114 3.0e-12 75.5 54 64.8
CBR_g30931 Chara braunii HOM05D003445 ORTHO05D004114 3.9e-12 75.1 55 60.0
BcaNung04928 Brassica carinata HOM05D003445 ORTHO05D004114 5.1e-12 74.7 54 70.4
ECA233G3917 Erigeron canadensis HOM05D003445 ORTHO05D004114 6.7e-12 74.3 58 60.3
Migut.F01911 Erythranthe guttata HOM05D003445 ORTHO05D004114 6.7e-12 74.3 54 64.8
SEGI_38080 Sequoiadendron giganteum HOM05D003445 ORTHO05D004114 6.7e-12 74.3 80 50.0
Lsat_1_v5_gn_8_17860 Lactuca sativa HOM05D003445 ORTHO05D004114 8.7e-12 73.9 58 60.3
AagrBONN_evm.TU.Sc2ySwM_228.931 Anthoceros agrestis HOM05D003445 ORTHO05D004114 1.1e-11 73.6 54 61.1
Lsat_1_v5_gn_2_103201 Lactuca sativa HOM05D003445 ORTHO05D004114 1.1e-11 73.6 55 61.8
CDE08G1488 Ceratophyllum demersum HOM05D003445 ORTHO05D004114 1.5e-11 73.2 54 66.7
HPP92_020767 Vanilla planifolia HOM05D003445 ORTHO05D004114 1.9e-11 72.8 54 64.8
Ciclev10032050m.g Citrus clementina HOM05D003445 ORTHO05D004114 5.6e-11 71.2 61 60.7
Mapoly0060s0047 Marchantia polymorpha HOM05D003445 ORTHO05D004114 2.1e-10 69.3 54 53.7
Lsat_1_v5_gn_6_10360 Lactuca sativa HOM05D001160 ORTHO05D020312 2.8e-10 68.9 57 57.9
A05p38680 Brassica napus HOM05D003445 ORTHO05D004114 3.1e-09 65.5 54 64.8
BraA05t22659Z Brassica rapa HOM05D003445 ORTHO05D004114 3.1e-09 65.5 54 64.8
DCAR_006384 Daucus carota HOM05D003445 ORTHO05D004114 6.9e-09 64.3 54 57.4
HanXRQChr08g0218311 Helianthus annuus HOM05D003445 ORTHO05D004114 9.0e-09 63.9 58 53.4
Sp3g08770 Schrenkiella parvula HOM05D003445 ORTHO05D004114 9.0e-09 63.9 86 45.3
BcaC05g29458 Brassica carinata HOM05D003445 ORTHO05D004114 3.4e-08 62.0 52 65.4
HanXRQChr14g0456171 Helianthus annuus HOM05D003445 ORTHO05D004114 4.5e-08 61.6 58 55.2
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 9.9e-08 60.5 36 75.0
C05p57550 Brassica napus HOM05D003445 ORTHO05D004114 9.9e-08 60.5 52 61.5
BolC5t34412H Brassica oleracea HOM05D003445 ORTHO05D004114 9.9e-08 60.5 52 61.5
SMO347G0528 Selaginella moellendorffii HOM05D003445 ORTHO05D004114 9.9e-08 60.5 54 50.0
SGA_v2.0_scaffold62G21367 Striga asiatica HOM05D003445 ORTHO05D004114 1.1e-06 57.0 34 73.5
SMO340G0186 Selaginella moellendorffii HOM05D003445 ORTHO05D004114 3.2e-06 55.5 55 49.1


User provided reference genes

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