Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 0.0e+00 1150.6 590 100.0
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 0.0e+00 1097.8 632 91.3
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 2.8e-303 1044.6 619 86.8
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 5.2e-302 1040.4 604 87.7
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 2.3e-294 1015.0 608 86.2
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 3.4e-285 984.6 595 84.7
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 6.2e-263 910.6 604 75.2
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 9.0e-262 906.7 601 75.5
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 1.3e-257 892.9 601 74.7
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 6.3e-255 884.0 523 86.6
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 4.1e-254 881.3 606 74.4
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 6.5e-252 874.0 599 74.6
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 8.4e-252 873.6 599 73.5
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 3.2e-251 871.7 596 74.0
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 3.2e-251 871.7 636 70.3
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 5.5e-251 870.9 595 74.5
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 7.9e-250 867.1 609 72.2
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 1.0e-249 866.7 605 72.9
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 1.3e-249 866.3 603 72.8
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 5.3e-246 854.4 607 72.0
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 6.9e-246 854.0 600 72.2
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.0e-244 850.1 607 70.7
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 2.2e-244 849.0 593 71.5
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 5.0e-244 847.8 604 71.5
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 3.2e-243 845.1 598 71.4
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.1e-238 830.1 602 70.1
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 3.1e-238 828.6 605 70.1
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 4.1e-238 828.2 602 69.3
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 5.3e-238 827.8 606 69.6
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 1.2e-237 826.6 604 71.0
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 1.7e-236 822.8 603 69.0
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 1.2e-234 816.6 604 68.5
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 1.6e-234 816.2 599 69.1
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 4.7e-234 814.7 606 69.0
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 7.9e-234 813.9 599 68.9
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 1.0e-233 813.5 604 68.9
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 1.5e-232 809.7 599 68.4
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 2.6e-232 808.9 540 76.1
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 5.7e-232 807.7 601 68.6
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 9.7e-232 807.0 608 67.3
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 2.2e-231 805.8 602 68.8
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 6.3e-231 804.3 602 67.8
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 8.2e-231 803.9 602 67.9
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 8.2e-231 803.9 603 68.7
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 1.4e-230 803.1 602 68.4
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 7.0e-230 800.8 594 68.7
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 5.0e-228 794.7 598 68.2
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 5.0e-228 794.7 599 67.1
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 6.5e-228 794.3 605 66.3
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 9.4e-227 790.4 598 67.9
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 9.4e-227 790.4 602 65.6
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 1.2e-226 790.0 606 66.8
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 8.0e-226 787.3 602 66.8
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 8.0e-226 787.3 608 65.5
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 1.0e-225 786.9 619 64.9
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 6.7e-225 784.3 572 69.2
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 2.0e-224 782.7 605 66.8
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 2.6e-224 782.3 606 66.7
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 4.4e-224 781.6 584 69.3
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 5.7e-224 781.2 594 67.7
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.3e-223 780.0 599 66.4
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 2.2e-223 779.2 596 65.3
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.1e-222 776.9 604 66.1
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 2.0e-221 772.7 598 66.1
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 4.5e-221 771.5 604 64.2
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.0e-220 770.4 597 64.8
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 1.7e-220 769.6 604 65.4
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 2.9e-220 768.8 604 65.4
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 2.9e-220 768.8 604 65.1
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 3.8e-220 768.5 620 64.2
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 5.0e-220 768.1 604 65.4
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 7.2e-219 764.2 595 63.5
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 9.4e-219 763.8 601 65.1
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 1.0e-217 760.4 604 64.6
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 1.8e-217 759.6 604 64.6
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 2.3e-217 759.2 603 64.7
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 5.2e-217 758.1 603 64.2
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 6.3e-215 751.1 603 64.7
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 6.3e-215 751.1 561 67.9
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 4.5e-213 745.0 607 63.8
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 1.0e-212 743.8 609 63.9
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 4.2e-211 738.4 605 63.3
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 4.2e-211 738.4 603 62.9
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 1.2e-210 736.9 605 63.3
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 2.3e-209 732.6 602 63.5
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 1.2e-208 730.3 603 61.9
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 1.2e-208 730.3 608 62.3
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 3.4e-208 728.8 599 62.8
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 3.4e-208 728.8 603 62.9
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 5.7e-208 728.0 608 62.2
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 6.3e-207 724.5 601 61.6
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 8.3e-207 724.2 603 62.7
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 1.6e-205 719.9 607 62.6
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 4.5e-205 718.4 590 63.2
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 5.9e-205 718.0 596 61.7
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 2.3e-204 716.1 604 61.8
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 9.5e-203 710.7 594 61.8
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 2.1e-202 709.5 599 59.8
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 2.8e-202 709.1 610 59.8
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 1.8e-201 706.4 605 61.5
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 8.9e-201 704.1 605 60.2
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 8.9e-201 704.1 597 62.6
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 8.3e-199 697.6 565 62.5
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 3.5e-197 692.2 584 62.2
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 8.6e-196 687.6 602 60.8
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.2e-194 683.7 585 59.8
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 1.6e-194 683.3 603 59.7
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 6.2e-194 681.4 603 59.5
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 1.7e-191 673.3 595 60.2
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.7e-191 673.3 595 60.2
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.2e-191 672.9 595 60.3
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 7.8e-189 664.5 595 59.7
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 3.0e-188 662.5 595 59.3
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 6.6e-188 661.4 595 59.5
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 2.8e-186 656.0 595 58.8
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 4.4e-184 648.7 599 56.6
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.1e-182 644.0 441 78.2
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.5e-179 633.6 601 58.1
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 1.1e-171 607.4 602 54.5
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 1.5e-171 607.1 601 55.6
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 1.2e-165 587.4 599 51.4
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 3.5e-165 585.9 626 52.7
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 7.8e-165 584.7 601 53.4
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 1.4e-161 573.9 468 63.0
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 2.6e-152 543.1 380 75.5
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 9.3e-150 534.6 597 48.9
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 7.6e-136 488.4 728 42.4
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 7.9e-133 478.4 304 78.9
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 1.4e-118 431.0 631 41.2
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 1.9e-118 430.6 508 47.6
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 1.0e-116 424.9 460 48.5
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 8.2e-114 415.2 319 64.3
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.1e-113 413.3 341 65.1
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 2.0e-107 394.0 612 40.8
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 3.7e-106 389.8 358 60.1
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 1.5e-78 298.1 613 34.9
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 3.1e-76 290.4 267 58.8
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 1.3e-74 285.0 223 62.8
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 7.0e-73 279.3 197 70.6
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 7.5e-67 259.2 632 33.9
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 1.0e-63 248.8 162 72.8
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 5.1e-63 246.5 136 81.6
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 3.3e-62 243.8 183 67.8
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 6.4e-58 229.6 137 91.2
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 3.1e-44 184.1 394 36.0
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 5.3e-44 183.3 119 73.1
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 8.7e-39 166.0 140 57.9
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 1.1e-38 165.6 115 69.6
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 1.5e-38 165.2 115 69.6
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 9.6e-38 162.5 99 81.8
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 9.6e-38 162.5 99 81.8
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 2.3e-31 141.4 204 48.5
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 3.9e-31 140.6 170 51.2
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 2.1e-29 134.8 80 76.2
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 1.3e-26 125.6 116 57.8
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 2.2e-26 124.8 80 72.5
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 7.9e-24 116.3 82 69.5
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 7.4e-22 109.8 119 57.1
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 2.5e-17 94.7 176 40.9
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 2.7e-16 91.3 65 66.2
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 2.8e-13 81.3 82 53.7
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 6.5e-10 70.1 83 43.4
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 4.2e-09 67.4 41 75.6
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 7.2e-09 66.6 44 75.0
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 2.7e-08 64.7 56 53.6
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 1.8e-07 62.0 35 82.9
TAR636G1761 Trochodendron aralioides HOM05D004159 ORTHO05D415208 2.6e-06 58.2 75 46.7


User provided reference genes

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