Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003890g0020 Nicotiana tabacum HOM05D000104 ORTHO05D005769 5.5e-300 1033.9 659 100.0
Nitab4.5_0000324g0220 Nicotiana tabacum HOM05D000104 ORTHO05D005769 2.4e-255 885.6 673 88.7
Sopen03g015780 Solanum pennellii HOM05D000104 ORTHO05D005769 9.2e-231 803.9 640 73.0
CAN.G570.8 Capsicum annuum HOM05D000104 ORTHO05D005769 3.6e-227 792.0 640 71.7
Solyc03g063220.2 Solanum lycopersicum HOM05D000104 ORTHO05D005769 4.9e-224 781.6 640 71.6
Peaxi162Scf00258g00431 Petunia axillaris HOM05D000104 ORTHO05D005769 1.9e-207 726.5 643 67.7
Dinv19274 Davidia involucrata HOM05D000104 ORTHO05D005769 2.2e-163 580.1 648 55.9
MSTRG.19900 Avicennia marina HOM05D000104 ORTHO05D005769 1.4e-151 540.8 638 53.6
Dinv14287 Davidia involucrata HOM05D000104 ORTHO05D005769 1.2e-150 537.7 638 56.6
Cc06_g16020 Coffea canephora HOM05D000104 ORTHO05D005769 3.6e-150 536.2 652 54.4
Migut.J01827 Erythranthe guttata HOM05D000104 ORTHO05D005769 1.0e-149 534.6 651 54.2
CiPaw.09G030900 Carya illinoinensis HOM05D000104 ORTHO05D005769 2.8e-139 500.0 664 50.9
Manes.15G110200 Manihot esculenta HOM05D000104 ORTHO05D005769 6.3e-139 498.8 623 51.4
QL07p023509 Quercus lobata HOM05D000104 ORTHO05D005769 1.4e-138 497.7 695 49.1
Rhsim03G0007000 Rhododendron simsii HOM05D000104 ORTHO05D005769 1.6e-137 494.2 661 51.0
Atru.chr8.1089 Acer truncatum HOM05D000104 ORTHO05D005769 3.5e-137 493.0 654 50.3
GSVIVG01033511001 Vitis vinifera HOM05D000104 ORTHO05D005769 4.2e-135 486.1 665 50.8
Thecc.05G185200 Theobroma cacao HOM05D000104 ORTHO05D005769 7.2e-135 485.3 654 51.2
TWI23G0183 Tripterygium wilfordii HOM05D000104 ORTHO05D005769 2.1e-134 483.8 644 50.9
TWI14G1199 Tripterygium wilfordii HOM05D000104 ORTHO05D005769 5.2e-133 479.2 636 50.9
PGR142G4395 Punica granatum HOM05D000104 ORTHO05D005769 1.2e-132 478.0 636 50.5
SGA_v2.0_scaffold105G30483 Striga asiatica HOM05D000104 ORTHO05D005769 5.7e-132 475.7 644 49.2
Sc11g0006160 Simmondsia chinensis HOM05D000104 ORTHO05D005769 2.8e-131 473.4 672 48.2
Ciclev10010891m.g Citrus clementina HOM05D000104 ORTHO05D005769 1.8e-130 470.7 658 48.6
unitig_26.g9068 Utricularia gibba HOM05D000104 ORTHO05D005769 2.4e-130 470.3 639 49.9
Gohir.A08G227300 Gossypium hirsutum HOM05D000104 ORTHO05D005769 4.1e-130 469.5 644 49.5
Duzib177G0813 Durio zibethinus HOM05D000104 ORTHO05D005769 9.1e-130 468.4 653 50.4
Glyma.02G174100 Glycine max HOM05D000104 ORTHO05D005769 1.2e-129 468.0 645 49.1
Oeu033742.2 Olea europaea HOM05D000104 ORTHO05D005769 1.2e-129 468.0 704 46.4
CSS0012736 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005769 2.7e-129 466.8 660 49.2
Potri.001G207700 Populus trichocarpa HOM05D000104 ORTHO05D005769 2.7e-129 466.8 645 48.5
Gorai.004G264200 Gossypium raimondii HOM05D000104 ORTHO05D005769 3.5e-129 466.5 643 49.1
Sabra01G0160500 Salix brachista HOM05D000104 ORTHO05D005769 5.9e-129 465.7 639 47.9
SGA_v2.0_scaffold69G23071 Striga asiatica HOM05D000104 ORTHO05D005769 1.0e-128 464.9 649 49.5
PSO170G6710 Papaver somniferum HOM05D000104 ORTHO05D005769 5.5e-127 459.1 684 47.4
PSO528G0284 Papaver somniferum HOM05D000104 ORTHO05D005769 9.5e-127 458.4 701 46.2
Prupe.4G135700 Prunus persica HOM05D000104 ORTHO05D005769 1.2e-124 451.4 722 45.8
Eucgr.K01834 Eucalyptus grandis HOM05D000104 ORTHO05D005769 3.4e-124 449.9 654 48.3
ECA248G0087 Erigeron canadensis HOM05D000104 ORTHO05D005769 4.4e-124 449.5 651 47.8
Ca_25705_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005769 1.7e-123 447.6 663 48.3
MELO3C009633.2 Cucumis melo HOM05D000104 ORTHO05D005769 2.2e-123 447.2 635 48.3
VMungo0720G3110 Vigna mungo HOM05D000104 ORTHO05D005769 4.9e-123 446.0 656 48.6
CsaV3_3G038900 Cucumis sativus L. HOM05D000104 ORTHO05D005769 6.3e-123 445.7 638 48.4
Glyma.09G112200 Glycine max HOM05D000104 ORTHO05D005769 8.3e-123 445.3 661 48.0
Potri.003G022100 Populus trichocarpa HOM05D000104 ORTHO05D005769 2.4e-122 443.7 650 46.9
TPR.G27751 Trifolium pratense HOM05D000104 ORTHO05D005769 2.4e-122 443.7 658 47.6
Phvul.007G259200 Phaseolus vulgaris HOM05D000104 ORTHO05D005769 1.2e-121 441.4 653 48.4
CiPaw.10G027000 Carya illinoinensis HOM05D000104 ORTHO05D005769 3.5e-121 439.9 663 47.5
Sabra03G0014100 Salix brachista HOM05D000104 ORTHO05D005769 4.5e-121 439.5 796 41.3
TAR381G0643 Trochodendron aralioides HOM05D000104 ORTHO05D005769 3.3e-119 433.3 651 47.5
Thhalv10019875m.g Eutrema salsugineum HOM05D000104 ORTHO05D005769 9.5e-119 431.8 647 45.7
Medtr1g053955 Medicago truncatula HOM05D000104 ORTHO05D005769 1.6e-118 431.0 662 47.1
Psat4g106680 Pisum sativum HOM05D000104 ORTHO05D005769 1.4e-117 427.9 659 46.3
HanXRQChr01g0026921 Helianthus annuus HOM05D000104 ORTHO05D005769 6.8e-117 425.6 645 45.9
MBI16_g14599_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 3.4e-116 423.3 709 45.0
THA.LOC104826283 Tarenaya hassleriana HOM05D000104 ORTHO05D005769 3.4e-116 423.3 645 47.9
AT3G12810 Arabidopsis thaliana HOM05D000104 ORTHO05D005769 7.5e-116 422.2 671 46.2
SalBow6G1274 Salvia bowleyana HOM05D000104 ORTHO05D005769 7.5e-116 422.2 650 46.3
RcHm_v2.0_Chr5g0025621 Rosa chinensis HOM05D000104 ORTHO05D005769 1.7e-115 421.0 702 44.9
Lalb_Chr21g0316431 Lupinus albus HOM05D000104 ORTHO05D005769 1.1e-114 418.3 646 45.7
Nn5g28295 Nelumbo nucifera HOM05D000104 ORTHO05D005769 2.4e-114 417.2 650 47.8
Aa31LG8G90 Aethionema arabicum HOM05D000104 ORTHO05D005769 5.4e-114 416.0 637 46.0
FvH4_3g15170 Fragaria vesca HOM05D000104 ORTHO05D005769 6.0e-113 412.5 693 43.0
HanXRQChr11g0348031 Helianthus annuus HOM05D000104 ORTHO05D005769 1.3e-112 411.4 638 49.7
FAN25G3235 Fragaria x ananassa HOM05D000104 ORTHO05D005769 1.9e-111 407.5 692 42.8
BcaB06g25509 Brassica carinata HOM05D000104 ORTHO05D005769 2.1e-110 404.1 657 45.7
A05p36660 Brassica napus HOM05D000104 ORTHO05D005769 8.0e-110 402.1 659 44.3
AL3G24490 Arabidopsis lyrata HOM05D000104 ORTHO05D005769 1.1e-109 401.7 668 44.2
ClCG10G017460 Citrullus lanatus HOM05D000104 ORTHO05D005769 1.1e-109 401.7 657 45.8
BraA05t22469Z Brassica rapa HOM05D000104 ORTHO05D005769 2.3e-109 400.6 661 44.5
Gohir.D08G247700 Gossypium hirsutum HOM05D000104 ORTHO05D005769 8.9e-109 398.7 608 48.2
Lj5g0023468 Lotus japonicus HOM05D000104 ORTHO05D005769 1.5e-108 397.9 638 45.1
MD10G1206600 Malus domestica HOM05D000104 ORTHO05D005769 3.4e-108 396.7 735 41.5
BcaC05g29235 Brassica carinata HOM05D000104 ORTHO05D005769 9.8e-108 395.2 648 44.3
C05p55090 Brassica napus HOM05D000104 ORTHO05D005769 1.1e-106 391.7 648 44.0
BolC5t34177H Brassica oleracea HOM05D000104 ORTHO05D005769 1.1e-106 391.7 650 43.8
DCAR_006645 Daucus carota HOM05D000104 ORTHO05D005769 1.9e-106 391.0 637 45.4
HPP92_024595 Vanilla planifolia HOM05D000104 ORTHO05D005769 1.9e-106 391.0 675 42.4
Hund17598 Selenicereus undatus HOM05D000104 ORTHO05D005769 2.7e-105 387.1 702 41.9
arahy.Tifrunner.gnm1.ann1.52E2E0 Arachis hypogaea HOM05D000104 ORTHO05D005769 1.3e-104 384.8 663 44.5
FAN11G3896 Fragaria x ananassa HOM05D000104 ORTHO05D005769 1.9e-103 380.9 693 41.3
Zm00001eb251100 Zea mays HOM05D000104 ORTHO05D005769 2.5e-103 380.6 644 42.5
FAN21G3997 Fragaria x ananassa HOM05D000104 ORTHO05D005769 3.3e-103 380.2 693 41.3
ATR1152G044 Amborella trichopoda HOM05D000104 ORTHO05D005769 4.3e-103 379.8 714 41.9
Lsat_1_v5_gn_1_55460 Lactuca sativa HOM05D000104 ORTHO05D005769 2.8e-102 377.1 638 43.9
Actinidia22030 Actinidia chinensis HOM05D000104 ORTHO05D005769 5.2e-101 372.9 425 56.5
Zm00001eb187690 Zea mays HOM05D000104 ORTHO05D005769 6.8e-101 372.5 641 43.2
CDE05G0740 Ceratophyllum demersum HOM05D000104 ORTHO05D005769 8.3e-99 365.5 640 43.3
Ah.13g077720 Amaranthus hybridus HOM05D000104 ORTHO05D005769 1.4e-98 364.8 661 40.7
Aqoxy4G02068 Aquilegia oxysepala HOM05D000104 ORTHO05D005769 6.2e-94 349.4 655 41.4
Haze_19977 Corylus avellana HOM05D000104 ORTHO05D005769 3.5e-89 333.6 747 37.9
MBI10_g44388_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 2.5e-87 327.4 712 39.9
arahy.Tifrunner.gnm1.ann1.2E0FT9 Arachis hypogaea HOM05D000104 ORTHO05D005769 5.3e-85 319.7 432 52.5
CANSAT64G1790 Cannabis sativa HOM05D000104 ORTHO05D005769 2.6e-84 317.4 283 66.4
EL10Ac3g07414 Beta vulgaris HOM05D000104 ORTHO05D005769 1.3e-83 315.1 678 39.5
Carub.0003s1217 Capsella rubella HOM05D000104 ORTHO05D005769 2.3e-80 304.3 304 59.9
AUR62018509 Chenopodium quinoa HOM05D000104 ORTHO05D005769 6.9e-77 292.7 652 37.9
Lj3C921T8 Lonicera japonica HOM05D000104 ORTHO05D005769 1.0e-72 278.9 549 41.7
AUR62020910 Chenopodium quinoa HOM05D000104 ORTHO05D005769 2.1e-70 271.2 650 37.2
SHI16560 Sapria himalayana HOM05D000104 ORTHO05D005769 9.0e-69 265.8 232 64.7
Sed0012301 Sechium edule HOM05D000104 ORTHO05D005769 4.8e-62 243.4 257 58.8
Mapoly0111s0052 Marchantia polymorpha HOM05D000104 ORTHO05D005769 1.3e-56 225.3 834 30.2
Pp3c10_13800 Physcomitrium patens HOM05D000104 ORTHO05D005769 5.7e-55 219.9 874 29.5
Oeu063882.1 Olea europaea HOM05D000104 ORTHO05D005769 1.1e-53 215.7 145 79.3
MBI10_g00718_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 3.4e-52 210.7 601 36.6
Oeu040389.1 Olea europaea HOM05D000104 ORTHO05D005769 1.0e-48 199.1 387 37.7
AagrBONN_evm.TU.Sc2ySwM_340.21 Anthoceros agrestis HOM05D000104 ORTHO05D005769 1.8e-48 198.4 619 31.2
Lj3C919G8 Lonicera japonica HOM05D000104 ORTHO05D005769 1.3e-46 192.2 565 33.8
MBI10_g00720_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 3.8e-43 180.6 120 76.7
COL.COLO4_22907 Corchorus olitorius HOM05D000104 ORTHO05D005769 7.2e-42 176.4 482 34.2
CANSAT64G2572 Cannabis sativa HOM05D000104 ORTHO05D005769 1.2e-41 175.6 349 38.4
Pp3c3_30220 Physcomitrium patens HOM05D000104 ORTHO05D005769 2.6e-39 167.9 747 27.6
Lj3A919G40 Lonicera japonica HOM05D000104 ORTHO05D005769 1.6e-33 148.7 85 88.2
Carub.0003s1218 Capsella rubella HOM05D000104 ORTHO05D005769 3.3e-31 141.0 295 37.3
CARHR087340 Cardamine hirsuta HOM05D000104 ORTHO05D005769 6.3e-30 136.7 294 37.1
Cpa.g.sc34.19 Carica papaya HOM05D000104 ORTHO05D005769 8.5e-27 126.3 295 35.9
FAN16G1962 Fragaria x ananassa HOM05D000104 ORTHO05D005769 1.5e-26 125.6 62 98.4
Cpa.g.c39138 Carica papaya HOM05D000104 ORTHO05D005769 8.0e-25 119.8 62 91.9
CBR_g19274 Chara braunii HOM05D000104 ORTHO05D005769 1.4e-24 119.0 142 50.0
SHI16561 Sapria himalayana HOM05D000104 ORTHO05D005769 1.2e-23 115.9 63 87.3
Cre14.g618860 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D005769 3.4e-23 114.4 137 44.5
Sp3g10970 Schrenkiella parvula HOM05D000104 ORTHO05D005769 1.3e-22 112.5 62 88.7
Sed0011551 Sechium edule HOM05D000104 ORTHO05D005769 1.7e-22 112.1 269 35.3
Lj3C921G6 Lonicera japonica HOM05D002180 ORTHO05D001339 3.1e-21 107.8 65 80.0
PRCOL_00002928 Prasinoderma coloniale HOM05D000104 ORTHO05D005769 3.1e-21 107.8 234 36.8
MCO13G222 Micromonas commoda HOM05D000104 ORTHO05D005769 1.2e-20 105.9 623 32.6
MCO13G223 Micromonas commoda HOM05D000104 ORTHO05D005769 1.2e-20 105.9 623 32.6
Gohir.D04G099250 Gossypium hirsutum HOM05D000104 ORTHO05D005769 5.9e-20 103.6 62 80.6
Gorai.009G401900 Gossypium raimondii HOM05D000104 ORTHO05D005769 5.5e-18 97.1 262 34.0
Hma1.2p1_0784F.1_g217140 Hydrangea macrophylla HOM05D000104 ORTHO05D005769 4.1e-13 80.9 109 50.5
Actinidia40433 Actinidia chinensis HOM05D000104 ORTHO05D005769 9.2e-13 79.7 65 70.8
Cpa.g.c33695 Carica papaya HOM05D000104 ORTHO05D005769 1.7e-11 75.5 150 40.0
SalBow3G0995 Salvia bowleyana HOM05D002628 ORTHO05D002785 2.3e-08 65.1 93 39.8
CANSAT01G2524 Cannabis sativa HOM05D002628 ORTHO05D002785 3.0e-08 64.7 89 44.9
Ciclev10018446m.g Citrus clementina HOM05D002628 ORTHO05D002785 6.8e-08 63.5 89 43.8
MSTRG.18000 Avicennia marina HOM05D002628 ORTHO05D002785 3.4e-07 61.2 98 37.8
CBR_g6670 Chara braunii HOM05D000019 ORTHO05D000002 4.4e-07 60.8 121 35.5
Manes.12G045400 Manihot esculenta HOM05D002628 ORTHO05D002785 7.5e-07 60.1 89 40.4
Pp3c7_10800 Physcomitrium patens HOM05D002628 ORTHO05D002785 7.5e-07 60.1 124 31.5
SGA_v2.0_scaffold6G03236 Striga asiatica HOM05D002628 ORTHO05D002785 7.5e-07 60.1 120 34.2
VMungo1215G2695 Vigna mungo HOM05D008141 ORTHO05D008631 7.5e-07 60.1 85 45.9
CDE04G0039 Ceratophyllum demersum HOM05D002628 ORTHO05D002785 9.8e-07 59.7 93 39.8
Sabra14G0142700 Salix brachista HOM05D002628 ORTHO05D002785 9.8e-07 59.7 86 41.9
Migut.N00621 Erythranthe guttata HOM05D002628 ORTHO05D002785 2.2e-06 58.5 83 37.3
SalBow6G2694 Salvia bowleyana HOM05D002628 ORTHO05D002785 2.2e-06 58.5 94 38.3
SalBow6G7039 Salvia bowleyana HOM05D002628 ORTHO05D002785 2.2e-06 58.5 94 38.3
Atru.chr5.2101 Acer truncatum HOM05D002628 ORTHO05D002785 2.9e-06 58.2 87 39.1
Eucgr.H00795 Eucalyptus grandis HOM05D002628 ORTHO05D002785 2.9e-06 58.2 125 32.8
Gohir.A11G137900 Gossypium hirsutum HOM05D002628 ORTHO05D002785 2.9e-06 58.2 90 42.2
Potri.014G189900 Populus trichocarpa HOM05D002628 ORTHO05D002785 2.9e-06 58.2 79 40.5
ATR0796G038 Amborella trichopoda HOM05D002628 ORTHO05D002785 3.7e-06 57.8 114 35.1
COL.COLO4_15677 Corchorus olitorius HOM05D002628 ORTHO05D002785 4.9e-06 57.4 88 40.9
Gorai.007G155000 Gossypium raimondii HOM05D002628 ORTHO05D002785 4.9e-06 57.4 90 41.1
Prupe.8G201800 Prunus persica HOM05D002628 ORTHO05D002785 8.3e-06 56.6 88 39.8
SGA_v2.0_scaffold3G01640 Striga asiatica HOM05D002628 ORTHO05D002785 8.3e-06 56.6 120 34.2


User provided reference genes

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