Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 0.0e+00 1090.5 559 100.0
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.7e-263 911.8 597 80.9
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.1e-253 879.8 638 74.8
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.6e-239 831.2 570 78.2
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 6.0e-231 804.3 582 72.7
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 1.5e-229 799.7 582 72.2
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 3.3e-221 771.9 604 70.2
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 2.5e-213 745.7 580 68.6
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.2e-212 743.4 592 67.2
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 7.1e-208 727.6 595 66.4
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 6.0e-207 724.5 564 69.9
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 3.4e-202 708.8 605 64.5
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 1.9e-200 703.0 596 63.4
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 4.6e-199 698.4 595 64.2
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 1.1e-197 693.7 593 64.2
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 2.5e-197 692.6 594 64.0
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 1.3e-196 690.3 593 63.2
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.6e-196 689.9 588 63.4
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 3.8e-193 678.7 594 63.3
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.1e-192 677.2 597 63.5
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 3.2e-192 675.6 593 63.4
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 3.2e-192 675.6 604 61.9
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 7.1e-192 674.5 599 62.9
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 2.1e-191 672.9 601 62.9
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 2.7e-191 672.5 596 62.4
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 4.6e-191 671.8 604 62.1
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 2.3e-190 669.5 595 62.5
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 3.9e-190 668.7 594 62.8
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 5.1e-190 668.3 593 62.7
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.5e-189 666.8 584 62.7
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 3.3e-189 665.6 609 60.1
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 2.8e-188 662.5 604 61.3
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 2.8e-188 662.5 606 60.9
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 1.1e-187 660.6 540 65.6
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 3.1e-187 659.1 591 60.6
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 5.3e-187 658.3 602 62.1
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 6.9e-187 657.9 607 61.0
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 9.0e-187 657.5 600 60.8
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 4.5e-186 655.2 592 62.7
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.8e-185 652.1 604 60.6
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 6.5e-185 651.4 615 60.5
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 3.2e-184 649.0 591 61.8
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 7.9e-183 644.4 588 61.1
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.3e-182 643.7 598 59.4
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 5.1e-182 641.7 599 58.9
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 6.7e-182 641.3 632 58.1
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.5e-181 639.4 584 61.0
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 1.6e-180 636.7 626 58.1
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.1e-179 634.0 589 61.5
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 1.8e-179 633.3 599 60.8
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 2.4e-179 632.9 576 62.0
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 9.0e-179 630.9 605 60.5
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 2.6e-178 629.4 593 60.4
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 4.5e-178 628.6 591 60.4
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.0e-177 627.5 592 59.6
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 2.2e-177 626.3 600 60.5
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 6.5e-177 624.8 614 58.6
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 4.6e-175 618.6 595 59.2
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 3.0e-174 615.9 594 58.9
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 3.9e-174 615.5 569 61.3
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 1.5e-173 613.6 606 58.7
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 7.4e-173 611.3 588 58.3
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 1.3e-172 610.5 593 57.5
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 2.8e-172 609.4 595 59.5
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 8.2e-172 607.8 528 61.6
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 1.7e-169 600.1 531 62.3
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 2.9e-169 599.4 601 56.2
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 2.9e-169 599.4 598 57.0
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 3.8e-169 599.0 586 58.2
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 2.5e-168 596.3 589 59.1
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 7.2e-168 594.7 570 57.2
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 1.4e-166 590.5 589 58.2
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 5.1e-166 588.6 607 55.4
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 6.7e-166 588.2 588 58.0
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 6.7e-166 588.2 597 56.4
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 2.6e-165 586.3 564 59.2
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 2.6e-165 586.3 588 57.8
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 3.3e-165 585.9 588 57.7
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 5.7e-165 585.1 592 56.8
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 1.3e-164 583.9 592 56.8
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 6.3e-164 581.6 588 57.0
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 2.4e-163 579.7 607 55.7
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 7.0e-163 578.2 592 57.1
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 7.0e-163 578.2 592 56.4
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 7.0e-163 578.2 592 56.4
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 2.0e-162 576.6 589 57.0
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 1.0e-161 574.3 615 54.6
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 5.0e-161 572.0 591 56.2
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 1.4e-160 570.5 589 57.0
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 3.2e-160 569.3 612 54.1
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 2.3e-158 563.1 579 57.0
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 9.7e-157 557.8 528 59.8
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 7.7e-154 548.1 548 58.0
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 3.8e-153 545.8 602 54.5
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 7.2e-152 541.6 634 51.9
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 1.6e-151 540.4 462 63.0
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 3.0e-150 536.2 594 53.7
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 5.2e-150 535.4 586 52.7
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 8.8e-150 534.6 611 54.0
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 1.6e-143 513.8 594 53.0
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 1.5e-141 507.3 572 54.4
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 2.2e-140 503.4 595 51.3
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 3.7e-140 502.7 599 51.1
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 6.8e-134 481.9 394 65.5
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.8e-131 473.8 610 49.5
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.6e-128 462.2 489 54.8
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 6.1e-127 458.8 315 74.3
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 5.8e-125 452.2 522 51.9
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 2.2e-124 450.3 508 51.2
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 1.7e-121 440.7 398 63.1
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 2.3e-118 430.3 423 57.4
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 2.3e-118 430.3 315 71.7
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.9e-115 420.6 314 69.4
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 6.2e-111 405.6 503 48.7
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 1.3e-108 397.9 579 45.6
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 6.2e-103 379.0 315 64.4
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 2.5e-96 357.1 265 70.6
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 1.5e-93 347.8 388 53.1
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 3.9e-81 306.6 626 36.3
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 3.9e-73 280.0 228 67.5
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 4.3e-72 276.6 311 53.7
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 1.2e-66 258.5 241 61.4
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.3e-65 255.0 348 48.6
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 2.3e-65 254.2 335 47.8
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 1.8e-62 244.6 499 34.3
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.4e-62 244.2 269 55.0
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 4.1e-62 243.4 259 54.4
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 5.9e-61 239.6 275 51.3
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 1.9e-59 234.6 158 77.8
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.0e-56 224.6 283 48.4
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 2.5e-56 224.2 229 55.9
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 1.3e-55 221.9 655 31.8
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 1.7e-55 221.5 268 50.7
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 6.3e-55 219.5 208 60.6
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 1.3e-52 211.8 273 49.8
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 6.1e-50 203.0 217 47.9
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 9.7e-48 195.7 272 43.4
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.5e-45 188.3 328 41.5
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 5.9e-45 186.4 212 51.4
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.1e-40 172.2 272 40.4
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 3.3e-40 170.6 264 43.6
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 6.3e-39 166.4 156 60.9
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 1.6e-37 161.8 719 25.5
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 3.8e-36 157.1 119 69.7
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 5.5e-35 153.3 130 63.8
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 1.7e-31 141.7 116 63.8
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.2e-31 141.4 210 46.2
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 2.8e-31 141.0 292 34.6
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 1.4e-30 138.7 128 59.4
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 3.1e-30 137.5 361 31.9
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.6e-29 135.2 150 54.0
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.5e-27 127.9 165 47.3
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 5.5e-27 126.7 100 66.0
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 7.2e-27 126.3 82 78.0
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 7.2e-27 126.3 91 72.5
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.6e-26 125.2 146 50.0
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 4.4e-24 117.1 250 33.6
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 1.7e-23 115.2 297 33.3
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 4.1e-22 110.5 173 40.5
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 8.9e-17 92.8 73 63.0
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 8.9e-17 92.8 122 48.4
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 1.7e-15 88.6 65 66.2
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 3.2e-14 84.3 62 66.1
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.6e-13 82.0 43 86.0
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 2.0e-13 81.6 57 70.2
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 2.0e-13 81.6 123 39.0
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 5.6e-11 73.6 234 27.8
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 3.6e-10 70.9 91 50.5
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 1.8e-09 68.6 66 56.1
Sopen05g010660 Solanum pennellii HOM05D003724 ORTHO05D004367 3.1e-09 67.8 57 63.2
Nitab4.5_0000108g0210 Nicotiana tabacum HOM05D008334 ORTHO05D010366 8.9e-09 66.2 49 69.4
PSO561G0043 Papaver somniferum HOM05D003724 ORTHO05D004367 2.4e-06 58.2 83 51.8
Ah.02g111740 Amaranthus hybridus HOM05D003315 ORTHO05D003407 3.2e-06 57.8 66 47.0
Ah.16g100850 Amaranthus hybridus HOM05D003315 ORTHO05D003407 3.2e-06 57.8 66 47.0
MBI01_g03586_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.2e-06 57.8 72 44.4
MBI13_g41189_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.2e-06 57.8 72 44.4
MBI16_g19191_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 4.1e-06 57.4 72 44.4
MBI07_g38547_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 5.4e-06 57.0 74 43.2


User provided reference genes

Program Settings