Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 0.0e+00 1647.9 821 100.0
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 0.0e+00 1565.4 821 95.1
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 0.0e+00 1402.1 877 81.5
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 0.0e+00 1373.6 822 83.9
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 0.0e+00 1363.2 822 83.1
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 0.0e+00 1357.4 822 83.1
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 0.0e+00 1265.4 824 76.7
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 0.0e+00 1261.1 822 76.5
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 0.0e+00 1257.7 823 76.2
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 0.0e+00 1254.6 861 73.2
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 0.0e+00 1246.9 823 75.5
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 0.0e+00 1232.2 798 76.7
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 0.0e+00 1214.1 822 73.2
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 0.0e+00 1191.8 825 73.5
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 0.0e+00 1181.8 825 71.6
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 0.0e+00 1160.6 826 70.2
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 0.0e+00 1158.3 821 69.4
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 0.0e+00 1151.0 823 69.3
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 0.0e+00 1133.2 827 70.6
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 0.0e+00 1129.8 862 66.1
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 0.0e+00 1127.9 824 68.2
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 0.0e+00 1125.9 822 68.6
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 0.0e+00 1125.2 839 67.6
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 0.0e+00 1124.8 822 68.5
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 0.0e+00 1121.3 828 68.0
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 0.0e+00 1120.5 821 67.8
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 0.0e+00 1120.1 827 67.7
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 0.0e+00 1119.4 829 69.4
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 0.0e+00 1118.6 823 67.6
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 0.0e+00 1117.8 821 68.1
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 0.0e+00 1116.3 822 68.0
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 0.0e+00 1114.0 822 67.6
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 0.0e+00 1112.4 823 66.3
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 0.0e+00 1109.4 823 67.6
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 0.0e+00 1107.0 832 67.3
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 0.0e+00 1094.0 827 66.1
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 0.0e+00 1092.8 824 66.5
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 0.0e+00 1092.0 825 66.9
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 0.0e+00 1089.3 824 65.4
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 0.0e+00 1088.6 824 65.2
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 0.0e+00 1087.0 829 66.9
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 0.0e+00 1086.6 826 65.9
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 0.0e+00 1082.0 824 65.2
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 0.0e+00 1078.5 825 65.5
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 1.7e-311 1072.4 819 65.8
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 5.1e-311 1070.8 816 65.4
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 2.8e-309 1065.1 824 65.2
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 2.8e-309 1065.1 825 63.6
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 3.6e-309 1064.7 810 66.9
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 1.5e-307 1059.3 830 65.2
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 7.5e-307 1057.0 831 64.9
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 2.7e-304 1048.5 786 67.9
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 2.9e-303 1045.0 826 63.7
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 8.6e-303 1043.5 840 61.9
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 4.0e-300 1034.6 824 64.4
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 5.2e-300 1034.2 842 64.6
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 2.0e-299 1032.3 828 62.2
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.1e-294 1016.5 833 62.7
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 1.5e-294 1016.1 827 64.0
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 7.3e-294 1013.8 823 62.6
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 9.5e-294 1013.4 831 62.9
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.6e-293 1012.7 833 62.4
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 1.6e-293 1012.7 835 63.5
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.8e-292 1009.2 703 71.7
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 2.3e-292 1008.8 841 62.3
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 1.2e-291 1006.5 769 66.6
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.0e-291 1005.7 838 61.3
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 2.6e-291 1005.4 790 65.3
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 1.7e-290 1002.7 831 62.0
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 1.1e-289 1000.0 832 61.2
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 7.1e-289 997.3 835 62.9
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 7.1e-289 997.3 839 61.4
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 1.2e-288 996.5 716 68.6
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.1e-288 995.7 840 61.4
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 2.7e-288 995.3 824 61.9
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 3.5e-288 995.0 836 61.1
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.6e-288 994.6 835 62.8
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.0e-287 993.4 835 62.4
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 2.3e-287 992.3 821 61.6
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 5.1e-287 991.1 823 62.5
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.5e-286 989.6 835 62.4
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 3.3e-286 988.4 828 60.6
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 7.3e-286 987.3 828 60.6
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 9.5e-286 986.9 832 61.3
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 9.5e-286 986.9 830 60.4
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 1.6e-285 986.1 832 61.7
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 2.1e-285 985.7 827 60.7
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 2.8e-285 985.3 832 62.0
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 2.8e-285 985.3 832 62.0
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 3.6e-285 984.9 836 60.8
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 6.2e-285 984.2 824 64.1
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 2.0e-283 979.2 827 59.7
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 3.4e-283 978.4 830 61.8
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 4.4e-283 978.0 834 59.6
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 2.9e-282 975.3 866 58.8
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.9e-281 972.6 834 61.6
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 3.5e-280 968.4 840 60.2
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.3e-279 966.5 868 58.8
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 1.7e-279 966.1 821 59.9
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 5.1e-279 964.5 747 63.1
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 8.6e-279 963.8 816 59.4
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 8.6e-279 963.8 832 58.8
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 2.5e-278 962.2 834 59.1
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 1.2e-277 959.9 829 59.5
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 2.8e-277 958.7 843 59.3
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 1.4e-276 956.4 836 59.4
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 2.6e-275 952.2 827 59.5
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 2.6e-275 952.2 828 59.8
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 4.4e-275 951.4 825 59.0
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 1.3e-274 949.9 827 59.1
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 2.9e-274 948.7 824 59.3
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 8.4e-274 947.2 829 59.1
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 8.4e-274 947.2 838 59.3
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 2.4e-273 945.7 828 57.6
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 4.2e-273 944.9 848 59.2
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 3.5e-272 941.8 822 58.4
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 3.9e-271 938.3 816 58.9
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 9.6e-270 933.7 625 73.3
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 4.8e-269 931.4 779 60.8
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 4.8e-269 931.4 720 63.8
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 4.0e-268 928.3 837 58.7
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 5.3e-268 927.9 813 58.9
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 3.4e-267 925.2 834 57.0
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 1.7e-266 922.9 811 58.8
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 2.2e-266 922.5 835 57.5
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 1.4e-265 919.8 817 58.0
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 9.3e-265 917.1 822 58.2
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 1.7e-263 912.9 821 58.5
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 3.0e-263 912.1 831 58.5
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 3.6e-261 905.2 838 56.8
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 5.8e-259 897.9 838 57.8
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 6.7e-255 884.4 826 56.7
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 1.6e-253 879.8 829 55.4
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 2.0e-251 872.8 831 55.7
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 7.1e-249 864.4 770 58.4
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 3.9e-247 858.6 829 55.2
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 1.7e-242 843.2 824 53.8
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 2.5e-238 829.3 832 53.4
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 2.2e-226 789.6 820 52.2
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 2.2e-226 789.6 839 52.4
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 3.8e-226 788.9 699 58.1
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 1.2e-224 783.9 831 52.5
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 1.9e-193 680.2 603 61.5
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 4.0e-183 646.0 422 76.1
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 5.8e-182 642.1 890 42.4
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 2.2e-173 613.6 716 49.0
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 5.4e-172 609.0 862 40.4
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 8.1e-168 595.1 916 40.3
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 8.4e-157 558.5 925 38.3
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 1.4e-148 531.2 908 37.0
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 8.4e-141 505.4 407 63.4
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 3.9e-130 469.9 323 72.1
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 1.0e-125 455.3 457 54.0
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 2.2e-125 454.1 638 41.5
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 6.3e-112 409.5 299 69.6
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.6e-107 394.8 501 45.9
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 3.7e-104 383.6 249 74.7
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 2.4e-95 354.4 267 68.9
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 4.4e-89 333.6 320 55.9
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 2.1e-83 314.7 220 70.5
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 6.1e-83 313.2 691 33.9
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 3.0e-82 310.8 259 59.8
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 2.6e-73 281.2 931 27.0
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 6.8e-66 256.5 156 79.5
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 1.5e-65 255.4 250 55.6
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 2.6e-49 201.4 201 55.7
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 2.9e-48 198.0 909 24.2
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 4.9e-48 197.2 206 51.9
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 5.4e-47 193.7 186 52.7
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 6.0e-46 190.3 208 52.4
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 5.6e-44 183.7 119 75.6
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.7e-40 172.2 112 76.8
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 5.1e-37 160.6 104 80.8
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 3.6e-35 154.5 464 29.5
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 6.2e-35 153.7 104 70.2
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 6.2e-35 153.7 100 72.0
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.8e-34 152.1 104 70.2
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.2e-33 149.4 104 69.2
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 7.6e-33 146.7 104 68.3
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 2.4e-26 125.2 117 58.1
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.0e-25 122.1 104 59.6
CSS0003704 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 8.7e-21 106.7 104 53.8
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 6.2e-19 100.5 89 58.4
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 2.5e-15 88.6 111 46.8
CAN.G744.3 Capsicum annuum HOM05D002670 ORTHO05D003079 7.1e-15 87.0 79 55.7
Oeu054828.1 Olea europaea HOM05D005151 ORTHO05D006322 1.2e-06 59.7 147 31.3


User provided reference genes

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