Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003572g0020 Nicotiana tabacum HOM05D006823 ORTHO05D008608 3.9e-109 398.3 220 100.0
Nitab4.5_0000016g0280 Nicotiana tabacum HOM05D006823 ORTHO05D008608 4.0e-98 361.7 221 93.7
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 4.2e-79 298.5 254 72.0
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 3.7e-75 285.4 254 70.1
CAN.G717.3 Capsicum annuum HOM05D006823 ORTHO05D008608 1.1e-71 273.9 236 73.7
Dinv24090 Davidia involucrata HOM05D006823 ORTHO05D008608 5.3e-66 255.0 249 63.5
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.7e-64 250.0 251 56.2
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 3.8e-64 248.8 254 64.2
MSTRG.19895 Avicennia marina HOM05D006823 ORTHO05D008608 8.5e-64 247.7 249 61.4
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 2.5e-63 246.1 249 60.6
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 1.2e-62 243.8 251 61.4
Rhsim04G0097800 Rhododendron simsii HOM05D006823 ORTHO05D008608 4.6e-62 241.9 254 60.6
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 6.1e-62 241.5 252 60.3
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 1.4e-61 240.4 251 56.2
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 3.0e-61 239.2 253 55.7
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 3.0e-61 239.2 253 59.7
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 6.7e-61 238.0 246 58.9
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 1.1e-60 237.3 254 60.2
Cc00_g14630 Coffea canephora HOM05D006823 ORTHO05D008608 1.5e-60 236.9 252 62.7
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 2.0e-60 236.5 253 55.7
SGA_v2.0_scaffold69G23076 Striga asiatica HOM05D006823 ORTHO05D008608 2.0e-60 236.5 272 56.6
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 5.7e-60 235.0 253 55.3
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 1.3e-59 233.8 251 55.8
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 1.7e-59 233.4 249 55.8
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 2.2e-59 233.0 251 51.0
CSS0050046 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 4.8e-59 231.9 240 60.4
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 6.3e-59 231.5 258 58.1
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 8.2e-59 231.1 252 49.6
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 2.4e-58 229.6 253 57.7
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 2.4e-58 229.6 254 57.1
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 3.1e-58 229.2 252 57.9
Sabra16G0052300 Salix brachista HOM05D006823 ORTHO05D008608 3.1e-58 229.2 251 57.8
Migut.J01822 Erythranthe guttata HOM05D006823 ORTHO05D008608 9.1e-58 227.6 255 60.0
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 1.2e-57 227.3 254 57.9
RcHm_v2.0_Chr3g0480211 Rosa chinensis HOM05D006823 ORTHO05D008608 1.5e-57 226.9 251 57.8
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 2.0e-57 226.5 251 57.0
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 2.0e-57 226.5 249 54.2
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 3.4e-57 225.7 253 56.9
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 4.5e-57 225.3 251 54.6
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 5.9e-57 224.9 248 56.0
arahy.Tifrunner.gnm1.ann1.DD58DK Arachis hypogaea HOM05D006823 ORTHO05D008608 5.9e-57 224.9 245 55.1
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 1.0e-56 224.2 250 56.8
Manes.08G045100 Manihot esculenta HOM05D006823 ORTHO05D008608 1.0e-56 224.2 252 56.7
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.3e-56 223.8 249 56.2
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.3e-56 223.8 252 56.3
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.7e-56 223.4 251 56.6
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 3.8e-56 222.2 252 56.3
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 3.8e-56 222.2 250 54.0
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 8.5e-56 221.1 253 57.3
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 1.1e-55 220.7 251 57.0
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 1.9e-55 219.9 251 56.6
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 2.5e-55 219.5 251 54.2
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 3.2e-55 219.2 248 56.5
Ciclev10012490m.g Citrus clementina HOM05D006823 ORTHO05D008608 4.2e-55 218.8 251 55.8
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 4.2e-55 218.8 251 57.0
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 1.2e-54 217.2 252 54.4
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 1.6e-54 216.9 254 53.9
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 2.1e-54 216.5 254 55.5
arahy.Tifrunner.gnm1.ann1.F8HZ0X Arachis hypogaea HOM05D006823 ORTHO05D008608 3.6e-54 215.7 250 53.6
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 3.6e-54 215.7 252 56.3
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 6.1e-54 214.9 243 50.6
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 2.3e-53 213.0 255 55.7
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 2.3e-53 213.0 281 49.8
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 6.7e-53 211.5 256 55.1
EL10Ac3g06941 Beta vulgaris HOM05D006823 ORTHO05D008608 8.8e-53 211.1 259 54.1
Sc25g0005140 Simmondsia chinensis HOM05D006823 ORTHO05D008608 2.0e-52 209.9 247 54.7
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 2.6e-52 209.5 256 54.3
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 3.3e-52 209.1 255 55.3
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 5.7e-52 208.4 256 54.3
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 7.4e-52 208.0 252 48.8
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 1.3e-51 207.2 255 54.1
Lj2A371G33 Lonicera japonica HOM05D006823 ORTHO05D008608 2.8e-51 206.1 251 55.4
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 3.7e-51 205.7 256 54.3
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 1.8e-50 203.4 256 53.9
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 1.8e-50 203.4 256 53.9
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 1.8e-50 203.4 254 53.5
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 3.1e-50 202.6 256 53.5
TAR623G1194 Trochodendron aralioides HOM05D006823 ORTHO05D008608 7.0e-50 201.4 238 55.9
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 9.1e-50 201.1 248 50.8
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 4.5e-49 198.7 253 53.4
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 5.9e-49 198.4 253 53.4
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 7.7e-49 198.0 251 53.4
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 6.5e-48 194.9 224 54.0
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 2.5e-47 193.0 253 48.2
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 5.5e-47 191.8 255 50.2
AUR62024323 Chenopodium quinoa HOM05D006823 ORTHO05D008608 3.6e-46 189.1 222 51.4
arahy.Tifrunner.gnm1.ann1.R3LTDD Arachis hypogaea HOM05D006823 ORTHO05D008608 8.8e-45 184.5 222 53.6
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 2.2e-43 179.9 205 54.6
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 8.2e-43 177.9 221 54.3
Haze_19965 Corylus avellana HOM05D006823 ORTHO05D008608 1.8e-42 176.8 249 51.4
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 5.3e-42 175.3 240 48.8
arahy.Tifrunner.gnm1.ann1.HB0B2V Arachis hypogaea HOM05D006823 ORTHO05D008608 3.5e-41 172.6 245 48.6
AUR62012062 Chenopodium quinoa HOM05D006823 ORTHO05D008608 2.5e-39 166.4 229 47.2
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 4.2e-39 165.6 259 40.5
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 4.7e-38 162.2 187 49.2
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 6.1e-38 161.8 247 45.3
MELO3C009640.2 Cucumis melo HOM05D006823 ORTHO05D008608 2.6e-36 156.4 187 49.7
Gohir.A09G127050 Gossypium hirsutum HOM05D006823 ORTHO05D008608 2.6e-36 156.4 185 49.7
Aqoxy1G00161 Aquilegia oxysepala HOM05D006823 ORTHO05D008608 1.3e-35 154.1 184 46.7
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 1.8e-34 150.2 252 39.3
FvH4_6g22250 Fragaria vesca HOM05D006823 ORTHO05D008608 2.2e-32 143.3 155 51.6
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 7.2e-31 138.3 154 54.5
Mapoly0104s0025 Marchantia polymorpha HOM05D006823 ORTHO05D008608 4.0e-29 132.5 264 34.5
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 5.2e-29 132.1 279 38.0
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.5e-25 119.4 150 45.3
arahy.Tifrunner.gnm1.ann1.ZK4YW6 Arachis hypogaea HOM05D006823 ORTHO05D008608 1.7e-24 117.1 180 45.6
CSS0018235 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.3e-24 116.7 144 56.2
arahy.Tifrunner.gnm1.ann1.WS1HM8 Arachis hypogaea HOM05D006823 ORTHO05D008608 3.8e-24 115.9 99 60.6
AagrBONN_evm.TU.Sc2ySwM_369.80 Anthoceros agrestis HOM05D006823 ORTHO05D008608 5.0e-24 115.5 255 35.7
Zm00001eb092000 Zea mays HOM05D006823 ORTHO05D008608 1.6e-17 94.0 128 43.0
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 2.0e-17 93.6 158 39.2
arahy.Tifrunner.gnm1.ann1.V1GDUY Arachis hypogaea HOM05D006823 ORTHO05D008608 1.3e-16 90.9 117 47.0
CSS0004878 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 6.6e-16 88.6 95 51.6
CSS0021268 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 6.6e-16 88.6 95 51.6
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 8.6e-16 88.2 251 31.9
Peaxi162Scf00258g00118 Petunia axillaris HOM05D006823 ORTHO05D008608 3.4e-12 76.3 57 63.2
Cpa.g.sc85.85 Carica papaya HOM05D006823 ORTHO05D008608 2.0e-09 67.0 45 64.4
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 2.7e-09 66.6 140 32.9
Sc22g0001400 Simmondsia chinensis HOM05D005384 ORTHO05D006477 7.3e-07 58.5 57 47.4
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 9.5e-07 58.2 57 45.6
Cre02.g105287 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D008521 1.2e-06 57.8 61 42.6
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 1.2e-06 57.8 57 45.6
MELO3C025104.2 Cucumis melo HOM05D005384 ORTHO05D006477 1.2e-06 57.8 57 45.6
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 1.2e-06 57.8 57 45.6
ECA246G0264 Erigeron canadensis HOM05D005384 ORTHO05D006477 1.6e-06 57.4 57 47.4
Gohir.A12G052500 Gossypium hirsutum HOM05D005384 ORTHO05D006477 1.6e-06 57.4 57 47.4
Gohir.D12G051100 Gossypium hirsutum HOM05D005384 ORTHO05D006477 1.6e-06 57.4 57 47.4
Gorai.008G054400 Gossypium raimondii HOM05D005384 ORTHO05D006477 1.6e-06 57.4 57 47.4
THA.LOC104801042 Tarenaya hassleriana HOM05D005384 ORTHO05D006477 1.6e-06 57.4 57 47.4
Cc04_g13050 Coffea canephora HOM05D005384 ORTHO05D006477 2.1e-06 57.0 57 43.9
HanXRQChr17g0535751 Helianthus annuus HOM05D005384 ORTHO05D006477 2.1e-06 57.0 57 47.4
PGR042G2720 Punica granatum HOM05D005384 ORTHO05D006477 2.8e-06 56.6 58 43.1
GSVIVG01013204001 Vitis vinifera HOM05D005384 ORTHO05D006477 2.8e-06 56.6 57 45.6
COL.COLO4_24446 Corchorus olitorius HOM05D005384 ORTHO05D006477 3.6e-06 56.2 57 45.6
Ah.14g086470 Amaranthus hybridus HOM05D005384 ORTHO05D006477 4.7e-06 55.8 57 47.4
arahy.Tifrunner.gnm1.ann1.EB4ABC Arachis hypogaea HOM05D005384 ORTHO05D006477 4.7e-06 55.8 65 40.0
arahy.Tifrunner.gnm1.ann1.R6E3N5 Arachis hypogaea HOM05D005384 ORTHO05D006477 4.7e-06 55.8 65 40.0
CANSAT25G0269 Cannabis sativa HOM05D005384 ORTHO05D006477 4.7e-06 55.8 58 44.8
Glyma.08G266700 Glycine max HOM05D005384 ORTHO05D006477 4.7e-06 55.8 61 44.3
Lsat_1_v5_gn_3_16520 Lactuca sativa HOM05D005384 ORTHO05D006477 4.7e-06 55.8 57 45.6
Lj3C397G6 Lonicera japonica HOM05D005384 ORTHO05D006477 4.7e-06 55.8 57 45.6
CSS0000239 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 6.2e-06 55.5 58 43.1
CSS0043592 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 6.2e-06 55.5 58 43.1
CARHR164150 Cardamine hirsuta HOM05D005384 ORTHO05D006477 6.2e-06 55.5 57 49.1
Eucgr.J01644 Eucalyptus grandis HOM05D005384 ORTHO05D006477 6.2e-06 55.5 57 45.6
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 6.2e-06 55.5 61 42.6
Lalb_Chr16g0391981 Lupinus albus HOM05D005384 ORTHO05D006477 6.2e-06 55.5 61 42.6
MD02G1270000 Malus domestica HOM05D005384 ORTHO05D006477 6.2e-06 55.5 61 44.3
Prupe.2G049800 Prunus persica HOM05D005384 ORTHO05D006477 6.2e-06 55.5 61 44.3
Hund21526 Selenicereus undatus HOM05D005384 ORTHO05D006477 6.2e-06 55.5 57 45.6
Thecc.04G058100 Theobroma cacao HOM05D005384 ORTHO05D006477 6.2e-06 55.5 54 46.3
AL5G35270 Arabidopsis lyrata HOM05D005384 ORTHO05D006477 8.1e-06 55.1 57 47.4
AT3G54230 Arabidopsis thaliana HOM05D005384 ORTHO05D006477 8.1e-06 55.1 57 47.4
Carub.0005s2082 Capsella rubella HOM05D005384 ORTHO05D006477 8.1e-06 55.1 57 47.4
Haze_14319 Corylus avellana HOM05D005384 ORTHO05D006477 8.1e-06 55.1 57 45.6
Lj2A247G82 Lonicera japonica HOM05D005384 ORTHO05D006477 8.1e-06 55.1 57 45.6
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 8.1e-06 55.1 57 43.9
Medtr8g070990 Medicago truncatula HOM05D005384 ORTHO05D006477 8.1e-06 55.1 61 42.6
QL02p064091 Quercus lobata HOM05D005384 ORTHO05D006477 8.1e-06 55.1 57 43.9
Rhsim07G0122100 Rhododendron simsii HOM05D005384 ORTHO05D006477 8.1e-06 55.1 57 45.6
TPR.G28963 Trifolium pratense HOM05D005384 ORTHO05D006477 8.1e-06 55.1 61 42.6
vmacro14142 Vaccinium macrocarpon HOM05D005384 ORTHO05D006477 8.1e-06 55.1 57 45.6


User provided reference genes

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