Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003534g0090 Nicotiana tabacum HOM05D005885 ORTHO05D008127 0.0e+00 1128.6 550 100.0
Nitab4.5_0010237g0040 Nicotiana tabacum HOM05D005885 ORTHO05D008127 1.9e-274 948.7 550 85.6
PGSC0003DMG400003932 Solanum tuberosum HOM05D005885 ORTHO05D008127 2.5e-266 921.8 550 81.8
Solyc08g079530.3 Solanum lycopersicum HOM05D005885 ORTHO05D008127 3.6e-265 917.9 550 82.0
Sopen08g027900 Solanum pennellii HOM05D005885 ORTHO05D008127 3.6e-265 917.9 550 81.6
CAN.G630.67 Capsicum annuum HOM05D005885 ORTHO05D008127 6.4e-262 907.1 550 80.9
Oeu040058.2 Olea europaea HOM05D005885 ORTHO05D008127 2.3e-235 818.9 560 72.0
CSS0003633 Camellia sinensis var. sinensis HOM05D005885 ORTHO05D008127 1.9e-234 815.8 544 72.6
Atru.chr9.1440 Acer truncatum HOM05D005885 ORTHO05D008127 1.7e-230 802.7 556 70.3
Migut.A00839 Erythranthe guttata HOM05D005885 ORTHO05D008127 3.8e-230 801.6 550 71.1
QL12p015122 Quercus lobata HOM05D005885 ORTHO05D008127 7.9e-228 793.9 541 72.3
Duzib205G0406 Durio zibethinus HOM05D005885 ORTHO05D008127 1.8e-227 792.7 544 71.1
Nn4g26386 Nelumbo nucifera HOM05D005885 ORTHO05D008127 2.3e-227 792.3 544 70.2
TWI81G1092 Tripterygium wilfordii HOM05D005885 ORTHO05D008127 5.1e-227 791.2 543 69.6
MSTRG.25552 Avicennia marina HOM05D005885 ORTHO05D008127 1.1e-226 790.0 551 71.0
TAR375G0281 Trochodendron aralioides HOM05D005885 ORTHO05D008127 2.0e-226 789.3 544 70.0
PGR031G0042 Punica granatum HOM05D005885 ORTHO05D008127 2.6e-226 788.9 545 70.3
Thecc.03G262500 Theobroma cacao HOM05D005885 ORTHO05D008127 7.4e-226 787.3 539 70.3
GSVIVG01004905001 Vitis vinifera HOM05D005885 ORTHO05D008127 6.3e-225 784.3 561 68.8
SalBow6G1575 Salvia bowleyana HOM05D005885 ORTHO05D008127 1.1e-224 783.5 551 70.2
Aqoxy7G00633 Aquilegia oxysepala HOM05D005885 ORTHO05D008127 2.4e-224 782.3 553 68.4
Ciclev10019819m.g Citrus clementina HOM05D005885 ORTHO05D008127 2.4e-224 782.3 549 69.8
Lsat_1_v5_gn_6_9740 Lactuca sativa HOM05D005885 ORTHO05D008127 3.1e-224 781.9 550 69.1
ClCG01G003610 Citrullus lanatus HOM05D005885 ORTHO05D008127 3.4e-223 778.5 549 70.9
MELO3C005584.2 Cucumis melo HOM05D005885 ORTHO05D008127 4.5e-223 778.1 549 70.3
Eucgr.D01985 Eucalyptus grandis HOM05D005885 ORTHO05D008127 4.5e-223 778.1 545 69.7
Cfa012022 Carpinus fangiana HOM05D005885 ORTHO05D008127 5.9e-223 777.7 543 69.8
CANSAT21G1830 Cannabis sativa HOM05D005885 ORTHO05D008127 1.3e-222 776.5 546 70.3
Sed0024879 Sechium edule HOM05D005885 ORTHO05D008127 1.7e-222 776.2 545 69.7
Sabra01G0089600 Salix brachista HOM05D005885 ORTHO05D008127 2.2e-222 775.8 546 70.1
Hma1.2p1_0138F.1_g063110 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 2.9e-222 775.4 550 69.5
Potri.001G116800 Populus trichocarpa HOM05D005885 ORTHO05D008127 8.5e-222 773.9 547 69.5
CsaV3_5G003710 Cucumis sativus L. HOM05D005885 ORTHO05D008127 1.4e-221 773.1 542 70.1
Manes.01G072400 Manihot esculenta HOM05D005885 ORTHO05D008127 5.5e-221 771.2 541 68.6
Gohir.D03G158300 Gossypium hirsutum HOM05D005885 ORTHO05D008127 2.7e-220 768.8 544 70.2
Gorai.003G166800 Gossypium raimondii HOM05D005885 ORTHO05D008127 3.6e-220 768.5 544 70.2
Cpa.g.sc29.82 Carica papaya HOM05D005885 ORTHO05D008127 6.1e-220 767.7 553 69.3
FAN04G1127 Fragaria x ananassa HOM05D005885 ORTHO05D008127 3.9e-219 765.0 556 66.5
AUR62017386 Chenopodium quinoa HOM05D005885 ORTHO05D008127 8.8e-219 763.8 546 68.5
ECA233G5871 Erigeron canadensis HOM05D005885 ORTHO05D008127 3.3e-218 761.9 546 68.1
FvH4_5g00790 Fragaria vesca HOM05D005885 ORTHO05D008127 1.3e-217 760.0 553 66.9
FAN08G2136 Fragaria x ananassa HOM05D005885 ORTHO05D000042 3.7e-217 758.4 553 67.5
HanXRQChr07g0188641 Helianthus annuus HOM05D005885 ORTHO05D008127 6.3e-217 757.7 535 68.4
PSO478G5024 Papaver somniferum HOM05D005885 ORTHO05D008127 6.3e-217 757.7 551 66.8
arahy.Tifrunner.gnm1.ann1.FFRS2J Arachis hypogaea HOM05D005885 ORTHO05D008127 4.1e-216 755.0 541 67.7
RcHm_v2.0_Chr7g0201341 Rosa chinensis HOM05D005885 ORTHO05D008127 7.0e-216 754.2 538 68.2
MD04G1078900 Malus domestica HOM05D005885 ORTHO05D008127 2.6e-215 752.3 547 67.5
SGA_v2.0_scaffold120G32808 Striga asiatica HOM05D005885 ORTHO05D008127 1.0e-214 750.4 581 65.7
THA.LOC104809442 Tarenaya hassleriana HOM05D005885 ORTHO05D008127 1.0e-214 750.4 537 68.7
TPR.G19593 Trifolium pratense HOM05D005885 ORTHO05D008127 1.0e-214 750.4 544 67.5
Psat2g179680 Pisum sativum HOM05D005885 ORTHO05D008127 5.0e-214 748.0 547 66.9
arahy.Tifrunner.gnm1.ann1.J86H7Q Arachis hypogaea HOM05D005885 ORTHO05D008127 1.5e-213 746.5 542 67.5
CARHR012660 Cardamine hirsuta HOM05D005885 ORTHO05D008127 2.5e-213 745.7 543 68.9
Thhalv10007458m.g Eutrema salsugineum HOM05D005885 ORTHO05D008127 4.2e-213 745.0 543 68.1
Carub.0001s1203 Capsella rubella HOM05D005885 ORTHO05D008127 9.4e-213 743.8 535 68.2
BolC8t49167H Brassica oleracea HOM05D005885 ORTHO05D008127 1.6e-212 743.0 542 68.3
Sp1g10970 Schrenkiella parvula HOM05D005885 ORTHO05D008127 1.6e-212 743.0 543 68.5
Medtr5g011780 Medicago truncatula HOM05D005885 ORTHO05D008127 2.1e-212 742.7 547 66.2
unitig_744.g24322 Utricularia gibba HOM05D005885 ORTHO05D008127 4.7e-212 741.5 544 66.5
Lalb_Chr09g0324521 Lupinus albus HOM05D005885 ORTHO05D008127 1.0e-211 740.3 545 67.7
Aa31LG1G2270 Aethionema arabicum HOM05D005885 ORTHO05D008127 5.2e-211 738.0 543 68.0
AT1G12370 Arabidopsis thaliana HOM05D005885 ORTHO05D008127 8.8e-211 737.3 544 68.0
A08p32870 Brassica napus HOM05D005885 ORTHO05D008127 1.5e-210 736.5 543 66.9
Glyma.11G029500 Glycine max HOM05D005885 ORTHO05D008127 1.7e-209 733.0 553 65.8
AL1G23690 Arabidopsis lyrata HOM05D005885 ORTHO05D008127 2.8e-209 732.3 537 67.4
CiPaw.11G147000 Carya illinoinensis HOM05D005885 ORTHO05D008127 2.8e-209 732.3 520 69.2
Haze_09046 Corylus avellana HOM05D005885 ORTHO05D008127 1.2e-207 726.9 543 66.7
VMungo1215G0841 Vigna mungo HOM05D005885 ORTHO05D008127 1.2e-207 726.9 554 65.3
Peaxi162Scf00271g00133 Petunia axillaris HOM05D005885 ORTHO05D008127 2.0e-207 726.1 548 69.2
BraA08t35209Z Brassica rapa HOM05D005885 ORTHO05D008127 2.7e-207 725.7 543 66.5
EL10Ac5g12625 Beta vulgaris HOM05D005885 ORTHO05D008127 4.5e-207 724.9 589 62.5
Dinv37758 Davidia involucrata HOM05D005885 ORTHO05D008127 1.9e-205 719.5 499 70.9
ATR0810G103 Amborella trichopoda HOM05D005885 ORTHO05D008127 1.2e-204 716.8 528 65.7
Lj2g0010887 Lotus japonicus HOM05D005885 ORTHO05D008127 8.0e-204 714.1 553 65.1
Rhsim07G0193500 Rhododendron simsii HOM05D005885 ORTHO05D008127 8.0e-204 714.1 553 65.8
CDE12G0141 Ceratophyllum demersum HOM05D005885 ORTHO05D008127 1.0e-203 713.8 530 64.0
Prupe.5G080300 Prunus persica HOM05D005885 ORTHO05D008127 1.5e-202 709.9 550 65.3
COL.COLO4_23868 Corchorus olitorius HOM05D005885 ORTHO05D008127 2.4e-200 702.6 517 66.5
PSO782G2305 Papaver somniferum HOM05D005885 ORTHO05D008127 7.0e-200 701.0 551 62.8
MBI04_g35270_MAGBIO Magnolia biondii HOM05D005885 ORTHO05D008127 2.0e-199 699.5 554 63.7
DCAR_008454 Daucus carota HOM05D005885 ORTHO05D008127 7.7e-199 697.6 541 65.2
ECA233G1449 Erigeron canadensis HOM05D005885 ORTHO05D008127 1.2e-196 690.3 516 64.3
Hund11561 Selenicereus undatus HOM05D005885 ORTHO05D008127 1.5e-194 683.3 552 62.1
AagrBONN_evm.TU.Sc2ySwM_117.35 Anthoceros agrestis HOM05D005885 ORTHO05D008127 9.2e-192 674.1 526 61.8
vmacro00223 Vaccinium macrocarpon HOM05D005885 ORTHO05D008127 5.9e-191 671.4 556 62.4
Ca_06688_v3 Cicer arietinum L. HOM05D005885 ORTHO05D008127 5.6e-189 664.8 548 61.7
FAN18G2769 Fragaria x ananassa HOM05D005885 ORTHO05D000042 9.2e-184 647.5 553 60.0
Lj8C254T7 Lonicera japonica HOM05D005885 ORTHO05D008127 8.6e-182 641.0 427 74.0
Cc08_g13300 Coffea canephora HOM05D005885 ORTHO05D008127 2.3e-179 632.9 450 71.1
Hma1.2p1_0138F.1_g063120 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 9.8e-178 627.5 543 59.9
Mapoly0149s0026 Marchantia polymorpha HOM05D005885 ORTHO05D008127 2.2e-177 626.3 528 57.6
CBR_g17934 Chara braunii HOM05D005885 ORTHO05D008127 6.0e-175 618.2 523 58.1
SMO137G0163 Selaginella moellendorffii HOM05D005885 ORTHO05D008127 1.6e-172 610.1 531 56.9
Pp3c5_3400 Physcomitrium patens HOM05D005885 ORTHO05D008127 6.8e-171 604.7 531 57.1
Sc07g0009420 Simmondsia chinensis HOM05D005885 ORTHO05D008127 1.1e-168 597.4 418 70.1
Gohir.A03G011600 Gossypium hirsutum HOM05D005885 ORTHO05D008127 2.4e-168 596.3 415 71.6
C08p15390 Brassica napus HOM05D005885 ORTHO05D008127 2.9e-161 572.8 423 68.3
Phvul.002G059800 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 1.2e-156 557.4 441 64.9
Cre12.g533000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D008127 5.1e-150 535.4 532 51.9
Ah.02g116190 Amaranthus hybridus HOM05D005885 ORTHO05D008127 1.6e-148 530.4 394 65.7
FAN13G1573 Fragaria x ananassa HOM05D005885 ORTHO05D008127 1.6e-143 513.8 453 57.8
MCO01G340 Micromonas commoda HOM05D005885 ORTHO05D008127 4.3e-141 505.8 529 50.7
Actinidia14469 Actinidia chinensis HOM05D005885 ORTHO05D008127 4.9e-137 492.3 380 65.0
BcaB03g13192 Brassica carinata HOM05D005885 ORTHO05D008127 6.7e-134 481.9 383 63.7
MCO16G424 Micromonas commoda HOM05D005885 ORTHO05D008127 3.2e-128 463.0 541 49.5
Actinidia02084 Actinidia chinensis HOM05D005885 ORTHO05D008127 2.1e-127 460.3 393 60.6
Zm00001eb026960 Zea mays HOM05D005885 ORTHO05D008127 2.0e-122 443.7 425 54.1
TAR375G0948 Trochodendron aralioides HOM05D005885 ORTHO05D008127 2.5e-117 426.8 315 65.7
PRCOL_00005710 Prasinoderma coloniale HOM05D005885 ORTHO05D008127 4.8e-116 422.5 515 45.4
Haze_26274 Corylus avellana HOM05D005885 ORTHO05D008127 2.9e-113 413.3 496 44.4
HPP92_020977 Vanilla planifolia HOM05D005885 ORTHO05D008127 2.9e-113 413.3 337 58.8
SEGI_07453 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 9.4e-112 408.3 317 63.1
Os10g0167600 Oryza sativa ssp. japonica HOM05D005885 ORTHO05D008127 1.1e-107 394.8 379 53.6
Glyma.01G212300 Glycine max HOM05D005885 ORTHO05D008127 2.3e-86 323.9 206 72.3
AUR62010516 Chenopodium quinoa HOM05D005885 ORTHO05D008127 3.5e-74 283.5 177 75.7
MCO05G034 Micromonas commoda HOM05D005885 ORTHO05D268017 4.6e-58 229.9 538 32.9
Lj8A254T79 Lonicera japonica HOM05D005885 ORTHO05D008127 4.1e-51 206.8 109 84.4
SEGI_03642 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 9.9e-45 185.7 94 85.1
TAR375G0547 Trochodendron aralioides HOM05D005885 ORTHO05D008127 3.5e-34 150.6 97 76.3
Cc08_g13290 Coffea canephora HOM05D005885 ORTHO05D008127 1.7e-33 148.3 70 90.0
Ah.02g116200 Amaranthus hybridus HOM05D005885 ORTHO05D008127 5.6e-32 143.3 81 81.5
QL09p013714 Quercus lobata HOM05D005885 ORTHO05D008127 2.3e-25 121.3 164 45.1
Phvul.002G151001 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 5.1e-25 120.2 129 48.8
SEGI_07050 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 1.5e-24 118.6 94 60.6
HanXRQChr10g0306201 Helianthus annuus HOM05D005885 ORTHO05D008127 2.5e-24 117.9 70 77.1
Cre02.g118000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D044175 4.2e-19 100.5 272 27.6
PRCOL_00007238 Prasinoderma coloniale HOM05D005885 ORTHO05D044175 9.6e-16 89.4 173 33.5
COL.COLO4_29220 Corchorus olitorius HOM05D005885 ORTHO05D008127 1.6e-15 88.6 53 79.2
RcHm_v2.0_Chr7g0201231 Rosa chinensis HOM05D005885 ORTHO05D342624 3.1e-06 57.8 75 45.3


User provided reference genes

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