Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 6.5e-117 424.1 218 100.0
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 7.2e-116 420.6 217 99.5
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 2.8e-112 408.7 216 95.4
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 2.0e-110 402.5 216 94.9
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 2.0e-110 402.5 216 94.9
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 4.5e-110 401.4 216 94.4
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 1.2e-107 393.3 218 90.8
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 8.0e-107 390.6 218 89.9
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 1.4e-106 389.8 218 89.9
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 3.0e-106 388.7 218 89.0
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 6.8e-106 387.5 218 89.4
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 8.9e-106 387.1 206 95.1
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 2.0e-105 386.0 218 87.6
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 4.4e-105 384.8 218 89.0
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 9.8e-105 383.6 218 89.4
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 2.9e-104 382.1 215 88.8
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 8.3e-104 380.6 217 87.6
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 8.3e-104 380.6 215 88.8
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 5.4e-103 377.9 218 86.7
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 7.0e-103 377.5 218 87.2
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 1.6e-102 376.3 218 85.8
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 1.7e-101 372.9 218 85.8
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 3.0e-101 372.1 211 88.2
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 6.6e-101 370.9 218 85.8
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 8.6e-101 370.5 211 88.6
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 8.6e-101 370.5 218 85.3
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 1.1e-100 370.2 218 86.2
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 1.5e-100 369.8 218 86.2
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 1.9e-100 369.4 218 85.3
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 1.9e-100 369.4 218 85.3
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 9.5e-100 367.1 218 84.9
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 1.2e-99 366.7 218 85.3
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 1.2e-99 366.7 218 85.3
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 1.6e-99 366.3 218 84.9
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 4.7e-99 364.8 218 84.9
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 1.4e-98 363.2 217 82.9
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 1.8e-98 362.8 218 83.0
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 1.8e-98 362.8 220 85.0
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 2.3e-98 362.5 218 83.5
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 3.1e-98 362.1 218 81.7
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 3.1e-98 362.1 218 81.7
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 3.1e-98 362.1 217 82.5
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 4.0e-98 361.7 218 83.0
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 5.2e-98 361.3 218 83.5
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 5.2e-98 361.3 218 83.5
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 5.2e-98 361.3 218 83.5
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 5.2e-98 361.3 218 83.5
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 6.8e-98 360.9 218 83.5
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 6.8e-98 360.9 218 82.6
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 8.9e-98 360.5 218 82.6
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 8.9e-98 360.5 216 86.1
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 8.9e-98 360.5 207 87.4
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 2.0e-97 359.4 218 81.2
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 2.6e-97 359.0 218 82.6
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 2.6e-97 359.0 216 85.6
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 2.6e-97 359.0 218 83.0
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 3.4e-97 358.6 218 81.2
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 5.8e-97 357.8 218 81.2
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 7.5e-97 357.5 218 82.6
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 9.8e-97 357.1 218 80.3
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 1.7e-96 356.3 216 85.2
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 2.9e-96 355.5 221 82.8
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 3.7e-96 355.1 217 82.5
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 3.7e-96 355.1 218 82.6
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 4.9e-96 354.8 217 82.5
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 4.9e-96 354.8 218 81.7
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 6.4e-96 354.4 218 83.0
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 1.1e-95 353.6 294 66.7
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.1e-95 353.6 217 82.0
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 1.1e-95 353.6 211 83.9
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 1.4e-95 353.2 218 79.8
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 1.4e-95 353.2 215 84.7
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 2.4e-95 352.4 218 81.2
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 4.1e-95 351.7 218 79.4
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 1.2e-94 350.1 207 84.1
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 3.5e-94 348.6 206 86.9
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 3.5e-94 348.6 218 80.7
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 4.6e-94 348.2 218 78.9
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 4.6e-94 348.2 223 78.5
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 6.0e-94 347.8 220 81.4
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 3.0e-93 345.5 209 83.3
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 3.0e-93 345.5 218 82.1
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 3.9e-93 345.1 207 84.1
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 8.6e-93 344.0 207 83.6
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 1.5e-92 343.2 218 79.8
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 4.3e-92 341.7 219 78.1
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 4.3e-92 341.7 218 77.1
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 5.6e-92 341.3 218 79.8
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 7.3e-92 340.9 219 78.1
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 7.3e-92 340.9 219 78.1
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 9.5e-92 340.5 219 78.1
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 9.5e-92 340.5 219 78.1
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 4.7e-91 338.2 218 78.4
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 8.1e-91 337.4 219 77.6
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.1e-90 337.0 203 82.3
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.1e-90 337.0 202 83.2
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 1.8e-90 336.3 221 77.4
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 4.4e-89 331.6 185 90.3
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 4.9e-88 328.2 211 78.7
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 8.3e-88 327.4 214 77.1
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 4.1e-87 325.1 196 84.2
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 2.7e-86 322.4 215 79.1
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 1.0e-85 320.5 211 74.4
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 2.5e-84 315.8 218 72.0
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 4.3e-84 315.1 277 59.6
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 7.3e-84 314.3 202 75.7
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 1.2e-83 313.5 203 74.9
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 1.9e-79 299.7 185 83.2
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 1.5e-76 290.0 174 82.2
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 8.1e-75 284.3 201 72.6
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 1.4e-74 283.5 173 81.5
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 1.8e-74 283.1 164 83.5
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 9.9e-73 277.3 221 58.8
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 1.3e-72 276.9 210 66.7
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 1.5e-68 263.5 210 61.4
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 1.3e-67 260.4 218 67.0
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 2.0e-65 253.1 212 67.0
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 2.1e-62 243.0 145 84.8
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 1.5e-60 236.9 210 58.1
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 1.3e-59 233.8 139 81.3
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 1.4e-58 230.3 145 82.1
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 1.1e-55 220.7 216 60.2
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 2.4e-55 219.5 176 68.2
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 4.3e-52 208.8 148 77.0
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 4.3e-52 208.8 175 65.7
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 8.4e-48 194.5 119 83.2
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 1.6e-43 180.3 110 77.3
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 4.8e-43 178.7 162 53.7
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 1.1e-42 177.6 216 52.3
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 1.1e-34 151.0 91 86.8
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 2.4e-34 149.8 84 91.7
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 4.5e-25 119.0 81 77.8
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 2.6e-17 93.2 56 78.6
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 3.2e-15 86.3 46 91.3
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 1.2e-14 84.3 53 71.7
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 2.1e-14 83.6 45 84.4
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 2.1e-14 83.6 66 68.2
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 9.1e-10 68.2 88 45.5
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 1.9e-07 60.5 34 85.3
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 5.5e-07 58.9 34 85.3


User provided reference genes

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