Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 0.0e+00 1137.5 655 100.0
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 0.0e+00 1122.5 655 97.9
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 4.6e-283 977.6 656 87.0
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 3.3e-281 971.5 659 87.3
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 1.1e-276 956.4 659 86.3
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 1.4e-276 956.1 659 86.2
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 1.6e-267 926.0 664 83.7
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 6.8e-234 814.3 657 71.7
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 5.9e-222 774.6 656 68.6
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 5.6e-220 768.1 655 68.5
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 1.6e-214 750.0 659 66.3
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 3.9e-213 745.3 640 68.4
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 7.3e-212 741.1 661 67.5
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 1.2e-211 740.3 661 65.5
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 4.7e-211 738.4 661 66.7
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 1.7e-208 729.9 661 64.6
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 8.3e-208 727.6 658 66.3
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 1.1e-207 727.2 661 64.9
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 5.4e-207 724.9 669 65.6
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 9.2e-207 724.2 670 65.7
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.6e-206 723.4 671 65.1
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 1.0e-205 720.7 657 63.3
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 5.0e-205 718.4 661 64.3
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 1.5e-204 716.8 664 63.1
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 3.3e-204 715.7 661 62.3
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 5.6e-204 714.9 662 64.5
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 1.1e-202 710.7 658 63.5
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 3.1e-202 709.1 658 62.8
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 8.9e-202 707.6 659 66.3
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 8.9e-202 707.6 659 66.3
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 8.9e-202 707.6 661 63.4
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 1.7e-200 703.4 658 62.6
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 2.9e-200 702.6 663 62.1
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.4e-199 699.5 658 61.4
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 3.2e-199 699.1 659 63.0
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 4.1e-199 698.7 658 61.2
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.7e-198 696.0 658 60.8
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 2.7e-198 696.0 659 63.3
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.0e-198 694.9 657 62.3
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.0e-198 694.9 658 61.1
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 6.0e-198 694.9 657 62.3
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 1.3e-197 693.7 609 66.2
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 1.3e-197 693.7 609 65.5
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 3.9e-197 692.2 653 62.2
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 6.6e-197 691.4 658 61.4
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 6.6e-197 691.4 657 62.7
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.5e-196 690.3 660 64.2
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 3.6e-195 685.6 659 60.8
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 2.3e-194 682.9 661 61.1
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 2.3e-194 682.9 664 59.9
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 4.0e-194 682.2 661 60.4
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 1.5e-193 680.2 659 59.6
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 3.4e-193 679.1 658 61.6
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 4.4e-193 678.7 657 58.8
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 5.8e-193 678.3 666 61.1
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 1.7e-192 676.8 666 60.4
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 3.7e-192 675.6 659 64.6
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 3.7e-192 675.6 668 61.8
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 4.9e-192 675.2 674 64.1
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 6.4e-192 674.9 615 64.6
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 8.4e-192 674.5 667 58.9
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 8.4e-192 674.5 658 62.3
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.2e-190 670.6 668 61.4
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 2.1e-190 669.8 677 63.1
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 2.7e-190 669.5 657 62.4
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 1.6e-187 660.2 657 61.9
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 6.2e-187 658.3 542 68.3
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 3.1e-186 656.0 666 63.5
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 1.5e-185 653.7 664 59.0
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 2.2e-184 649.8 662 59.2
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 1.9e-183 646.7 662 57.6
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 7.1e-183 644.8 654 56.4
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 2.1e-182 643.3 529 68.8
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 7.8e-182 641.3 656 59.6
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 1.7e-181 640.2 654 56.9
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 3.3e-180 636.0 655 56.3
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 7.3e-180 634.8 664 55.7
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 6.2e-179 631.7 655 60.6
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 1.8e-178 630.2 658 56.5
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 2.4e-178 629.8 662 56.3
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 6.9e-178 628.2 660 55.6
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 9.0e-178 627.9 656 58.8
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 1.2e-177 627.5 660 55.3
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 2.2e-176 623.2 656 57.3
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 4.9e-176 622.1 660 56.7
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 8.4e-176 621.3 659 58.3
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 5.4e-175 618.6 659 57.1
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 5.4e-175 618.6 659 57.1
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 1.2e-174 617.5 662 60.1
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 1.6e-174 617.1 660 60.6
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 4.6e-174 615.5 659 55.5
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.3e-173 613.2 608 59.4
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 3.0e-173 612.8 653 55.1
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 5.1e-173 612.1 668 57.9
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 1.9e-172 610.1 665 56.1
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.3e-172 609.4 662 56.5
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 4.3e-172 609.0 660 58.5
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 5.6e-172 608.6 657 59.2
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 1.3e-171 607.4 662 58.5
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 1.6e-171 607.1 658 57.9
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 2.1e-171 606.7 618 58.9
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 2.8e-171 606.3 666 61.6
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 6.2e-171 605.1 663 54.6
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 2.4e-170 603.2 663 54.4
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 3.1e-170 602.8 659 55.2
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 4.0e-170 602.4 660 54.8
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 4.5e-169 599.0 549 62.7
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 4.5e-169 599.0 549 62.7
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 1.1e-167 594.3 666 54.1
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 5.5e-167 592.0 603 59.5
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.0e-166 588.6 662 53.8
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.3e-165 587.4 666 53.6
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.8e-165 587.0 666 53.9
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 3.9e-165 585.9 605 58.8
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 3.3e-164 582.8 654 55.4
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 5.6e-164 582.0 670 53.9
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 2.9e-160 569.7 661 52.0
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 3.2e-159 566.2 665 54.3
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 5.5e-159 565.5 659 55.7
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 1.0e-157 561.2 662 53.9
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 1.8e-157 560.5 656 54.7
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 6.7e-157 558.5 567 58.7
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.7e-157 558.1 664 51.2
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.1e-154 551.2 670 51.2
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 1.1e-154 551.2 611 55.8
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 1.4e-154 550.8 657 52.1
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 2.4e-154 550.1 558 56.5
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 7.6e-153 545.0 670 50.9
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 1.1e-151 541.2 655 50.4
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 3.2e-151 539.7 657 50.8
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 3.5e-150 536.2 668 50.6
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 3.0e-149 533.1 659 53.4
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 8.2e-147 525.0 663 50.4
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 3.8e-144 516.2 608 53.3
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 2.5e-143 513.5 505 58.0
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 2.3e-141 506.9 540 55.7
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.3e-141 506.9 659 48.1
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 1.3e-139 501.1 619 51.4
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.8e-139 500.0 642 53.1
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 3.1e-138 496.5 617 49.9
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 2.0e-137 493.8 670 49.3
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 2.9e-136 490.0 672 49.1
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 1.2e-134 484.6 659 46.9
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 1.0e-133 481.5 685 45.3
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 2.0e-132 477.2 588 51.7
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 3.3e-132 476.5 684 45.9
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 1.7e-131 474.2 611 48.8
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 2.0e-124 450.7 401 69.6
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 1.2e-116 424.9 665 45.6
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.4e-114 417.9 621 46.7
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 1.2e-113 414.8 622 46.0
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 3.6e-102 376.7 422 53.3
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 7.5e-100 369.0 399 55.1
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 8.3e-99 365.5 400 54.8
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 1.8e-93 347.8 309 61.8
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 6.6e-88 329.3 657 39.6
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 4.7e-86 323.2 549 43.4
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.7e-83 314.7 671 36.7
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 1.0e-80 305.4 588 41.5
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.3e-75 288.5 434 44.0
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 8.4e-75 285.8 540 39.4
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 3.5e-73 280.4 232 67.7
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 6.4e-59 233.0 632 34.8
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 6.0e-49 199.9 255 44.7
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 1.6e-33 148.7 113 63.7
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.3e-31 141.0 221 47.1
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 8.2e-30 136.3 78 84.6
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 9.4e-26 122.9 156 50.6
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.6e-25 122.1 109 56.0
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 3.9e-24 117.5 93 67.7
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 6.3e-22 110.2 135 42.2
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.2e-19 101.7 61 73.8
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.5e-18 98.2 78 70.5
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.6e-17 95.5 74 62.2
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 3.0e-16 91.3 96 64.6
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 1.7e-11 75.5 60 61.7
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 2.1e-09 68.6 362 26.5
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 6.1e-09 67.0 123 41.5
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 6.7e-08 63.5 591 23.0
Lj8E171T0 Lonicera japonica HOM05D003743 ORTHO05D004311 8.2e-06 56.6 78 78.2


User provided reference genes

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