Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 0.0e+00 1338.6 953 100.0
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 0.0e+00 1238.8 949 96.0
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 0.0e+00 1196.4 953 90.7
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 0.0e+00 1159.4 953 89.7
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 0.0e+00 1149.4 953 89.2
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 0.0e+00 1144.0 953 89.1
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 8.7e-307 1057.0 956 82.3
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 2.1e-305 1052.4 971 79.0
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 3.4e-303 1045.0 957 85.1
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 2.7e-300 1035.4 953 84.1
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 1.3e-299 1033.1 962 83.9
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 4.3e-298 1028.1 955 82.2
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 6.9e-296 1020.8 995 66.1
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 4.2e-293 1011.5 956 69.9
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 2.8e-289 998.8 935 80.6
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 4.5e-287 991.5 938 80.3
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 3.6e-284 981.9 956 79.3
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 2.5e-282 975.7 934 79.8
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 4.8e-281 971.5 934 79.7
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 8.2e-281 970.7 954 79.4
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 1.8e-280 969.5 939 79.0
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 1.2e-279 966.8 936 79.5
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 2.0e-279 966.1 959 78.3
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 3.4e-279 965.3 941 77.0
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 2.9e-278 962.2 940 78.5
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 8.5e-278 960.7 951 78.1
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 1.9e-277 959.5 938 77.8
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 2.5e-277 959.1 936 78.6
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 4.7e-276 954.9 954 76.3
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 7.9e-276 954.1 954 78.3
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 1.4e-275 953.4 954 77.5
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 2.3e-275 952.6 938 78.4
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 3.9e-275 951.8 938 77.5
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 4.4e-274 948.3 959 78.3
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 1.7e-273 946.4 978 64.8
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 8.2e-273 944.1 957 76.2
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 1.4e-272 943.3 953 76.7
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 4.1e-272 941.8 955 77.6
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 5.3e-272 941.4 934 76.0
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 7.2e-269 931.0 936 76.0
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 2.1e-268 929.5 951 76.9
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 1.4e-267 926.8 1023 70.2
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 1.5e-266 923.3 937 66.4
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 4.4e-266 921.8 939 76.3
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 9.7e-266 920.6 963 76.2
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 1.7e-265 919.8 935 74.4
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 1.8e-264 916.4 958 73.8
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 4.1e-264 915.2 937 75.6
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 1.6e-263 913.3 937 75.5
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 2.0e-263 912.9 1128 67.6
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 1.0e-262 910.6 943 76.2
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 1.2e-260 903.7 943 73.1
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 1.6e-260 903.3 738 79.9
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 1.3e-257 893.6 939 72.1
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 2.8e-257 892.5 955 73.7
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 2.8e-257 892.5 936 74.1
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 3.7e-257 892.1 944 75.6
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 4.8e-257 891.7 966 69.4
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 8.3e-257 891.0 953 75.3
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 7.0e-256 887.9 942 74.8
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 3.5e-255 885.6 944 74.8
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 1.1e-253 880.6 943 73.9
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 3.2e-253 879.0 961 71.8
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 5.5e-253 878.2 984 72.2
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 9.5e-253 877.5 938 66.6
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 2.1e-252 876.3 943 73.7
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 4.0e-251 872.1 943 74.0
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 8.8e-251 870.9 938 67.8
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.5e-250 870.2 960 72.3
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 2.6e-250 869.4 941 73.3
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 5.7e-250 868.2 960 72.3
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 7.5e-250 867.8 957 71.6
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 8.3e-249 864.4 960 72.0
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 1.1e-248 864.0 934 73.8
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 1.8e-248 863.2 953 72.4
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.6e-247 860.1 960 71.8
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 3.5e-247 859.0 950 70.8
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 1.7e-246 856.7 954 70.5
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 3.8e-246 855.5 965 68.2
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 6.6e-246 854.7 960 71.6
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 3.3e-245 852.4 954 63.7
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 7.3e-245 851.3 954 70.9
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 2.8e-244 849.4 934 72.4
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 3.6e-244 849.0 956 72.7
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 5.2e-243 845.1 967 70.4
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 1.5e-242 843.6 951 72.1
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 2.0e-242 843.2 951 72.2
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 3.4e-242 842.4 951 72.1
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 2.9e-241 839.3 951 71.9
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 2.7e-239 832.8 951 71.6
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 3.5e-239 832.4 943 72.0
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 1.9e-237 826.6 944 72.6
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 1.6e-236 823.5 821 80.6
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 2.8e-236 822.8 964 50.7
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 2.8e-236 822.8 960 69.9
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 5.0e-230 802.0 939 70.9
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 6.4e-225 785.0 887 72.6
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 3.1e-219 766.1 933 67.3
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 2.4e-211 740.0 937 65.6
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 1.0e-206 724.5 854 71.8
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 3.9e-206 722.6 934 66.4
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 2.7e-191 673.3 918 63.2
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 9.0e-187 658.3 854 66.3
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 7.6e-186 655.2 945 55.0
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 1.1e-176 624.8 693 65.4
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 1.2e-175 621.3 924 61.3
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 5.0e-169 599.4 932 58.9
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 1.3e-164 584.7 935 58.8
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 1.5e-162 577.8 952 56.8
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 1.5e-162 577.8 952 56.8
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 3.3e-157 560.1 970 59.2
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 3.7e-132 476.9 646 46.1
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 6.0e-114 416.4 598 59.2
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 1.4e-107 395.2 936 49.1
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 8.9e-102 375.9 953 42.7
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 2.1e-98 364.8 591 40.9
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 3.6e-95 354.0 290 64.1
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 4.6e-74 283.9 728 43.3
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 3.1e-54 218.0 183 63.9
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.2e-45 189.5 188 56.4
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 5.0e-44 184.1 135 63.0
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 1.4e-43 182.6 127 66.1
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 2.0e-40 172.2 124 62.1
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 6.7e-33 147.1 123 59.3
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 8.3e-31 140.2 115 61.7
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 3.5e-29 134.8 113 59.3
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 9.4e-27 126.7 136 47.8
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 7.5e-24 117.1 77 77.9
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 8.3e-23 113.6 86 72.1
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 3.8e-20 104.8 71 83.1
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.9e-19 102.4 82 59.8
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 1.9e-19 102.4 76 61.8
PGSC0003DMG400036928 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.9e-19 102.4 103 64.1
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 7.2e-19 100.5 81 69.1
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 2.8e-18 98.6 84 61.9
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 3.4e-16 91.7 182 40.1
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 2.2e-15 89.0 73 61.6
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 1.7e-12 79.3 52 75.0
DCAR_024719 Daucus carota HOM05D005151 ORTHO05D006322 1.4e-09 69.7 178 32.0
Cfa003664 Carpinus fangiana HOM05D005316 ORTHO05D006495 1.2e-08 66.6 57 59.6
Solyc09g018520.1 Solanum lycopersicum HOM05D005316 ORTHO05D006495 4.4e-08 64.7 81 45.7
Lj4A288G22 Lonicera japonica HOM05D005151 ORTHO05D006322 7.5e-08 63.9 178 29.2
ECA240G1097 Erigeron canadensis HOM05D005151 ORTHO05D006322 4.9e-07 61.2 178 29.2
Lsat_1_v5_gn_7_34720 Lactuca sativa HOM05D005151 ORTHO05D006322 4.9e-07 61.2 184 28.8
Nitab4.5_0002842g0020 Nicotiana tabacum HOM05D005151 ORTHO05D006322 4.9e-07 61.2 182 28.0
HanXRQChr03g0063021 Helianthus annuus HOM05D005151 ORTHO05D006322 8.3e-07 60.5 179 28.5
Nitab4.5_0002079g0070 Nicotiana tabacum HOM05D005151 ORTHO05D006322 1.1e-06 60.1 182 27.5
Gohir.D07G013300 Gossypium hirsutum HOM05D005151 ORTHO05D006322 1.4e-06 59.7 178 29.2
Psat3g191240 Pisum sativum HOM05D005316 ORTHO05D006495 1.4e-06 59.7 50 56.0
CDE05G0358 Ceratophyllum demersum HOM05D005151 ORTHO05D006322 1.9e-06 59.3 178 28.1
Gorai.001G014000 Gossypium raimondii HOM05D005151 ORTHO05D006322 3.2e-06 58.5 178 28.7
CSS0027881 Camellia sinensis var. sinensis HOM05D005151 ORTHO05D006322 4.1e-06 58.2 178 28.7
ClCG04G008220 Citrullus lanatus HOM05D000645 ORTHO05D000494 4.1e-06 58.2 174 25.9
Gohir.A07G013500 Gossypium hirsutum HOM05D005151 ORTHO05D006322 4.1e-06 58.2 178 28.7
Lj1A939T58 Lonicera japonica HOM05D000526 ORTHO05D002053 4.1e-06 58.2 123 30.1
Peaxi162Scf00498g00525 Petunia axillaris HOM05D005151 ORTHO05D006322 4.1e-06 58.2 183 28.4
Solyc07g041080.3 Solanum lycopersicum HOM05D005151 ORTHO05D006322 4.1e-06 58.2 183 26.8
Sopen07g020370 Solanum pennellii HOM05D005151 ORTHO05D006322 4.1e-06 58.2 183 27.3
COL.COLO4_27437 Corchorus olitorius HOM05D005151 ORTHO05D006322 5.4e-06 57.8 189 26.5
CARHR237730 Cardamine hirsuta HOM05D005151 ORTHO05D006322 7.0e-06 57.4 173 28.3
SMO358G0628 Selaginella moellendorffii HOM05D004758 ORTHO05D006063 7.0e-06 57.4 181 26.5
PGR142G4460 Punica granatum HOM05D005151 ORTHO05D006322 9.2e-06 57.0 179 26.8


User provided reference genes

Program Settings