Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 5.6e-71 270.8 133 100.0
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 5.6e-71 270.8 133 100.0
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 1.1e-69 266.5 133 98.5
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 1.8e-69 265.8 133 97.7
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 4.0e-69 264.6 133 96.2
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 9.0e-69 263.5 133 97.0
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 1.2e-65 253.1 132 93.9
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 2.1e-65 252.3 133 93.2
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 3.5e-65 251.5 131 94.7
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 3.5e-65 251.5 131 94.7
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 4.6e-65 251.1 131 93.1
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 7.9e-65 250.4 132 92.4
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 1.0e-64 250.0 131 92.4
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 1.0e-64 250.0 131 93.1
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 1.3e-64 249.6 133 91.7
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 1.3e-64 249.6 133 91.0
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 2.3e-64 248.8 133 91.7
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 3.0e-64 248.4 131 92.4
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 3.0e-64 248.4 132 93.9
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 3.0e-64 248.4 130 92.3
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 3.9e-64 248.1 130 92.3
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 3.9e-64 248.1 133 90.2
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 3.9e-64 248.1 131 92.4
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 3.9e-64 248.1 133 94.0
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 5.1e-64 247.7 131 91.6
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 5.1e-64 247.7 133 89.5
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 6.7e-64 247.3 133 91.0
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 6.7e-64 247.3 131 91.6
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 1.1e-63 246.5 131 90.8
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 1.5e-63 246.1 131 91.6
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 1.5e-63 246.1 131 90.8
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 1.5e-63 246.1 131 91.6
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 1.9e-63 245.7 131 92.4
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 1.9e-63 245.7 129 92.2
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 3.3e-63 245.0 133 90.2
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 4.3e-63 244.6 131 90.8
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 5.7e-63 244.2 131 90.1
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.7e-63 244.2 131 90.1
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.7e-63 244.2 131 90.1
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 5.7e-63 244.2 131 90.1
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 7.4e-63 243.8 133 88.7
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 7.4e-63 243.8 130 90.8
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 7.4e-63 243.8 129 90.7
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 1.3e-62 243.0 133 88.0
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.3e-62 243.0 130 92.3
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.3e-62 243.0 131 89.3
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 1.6e-62 242.7 133 88.0
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.6e-62 242.7 131 89.3
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.6e-62 242.7 131 90.8
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 2.2e-62 242.3 130 90.8
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.2e-62 242.3 129 89.9
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 2.8e-62 241.9 130 90.0
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 3.7e-62 241.5 131 89.3
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 4.8e-62 241.1 133 91.0
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 6.3e-62 240.7 131 89.3
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 6.3e-62 240.7 129 89.9
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 6.3e-62 240.7 132 88.6
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 8.2e-62 240.4 129 89.9
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 8.2e-62 240.4 132 88.6
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 3.1e-61 238.4 133 89.5
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 4.1e-61 238.0 131 87.8
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 6.9e-61 237.3 186 68.8
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 1.2e-60 236.5 126 91.3
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 2.0e-60 235.7 131 87.8
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.0e-60 235.7 131 88.5
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 2.0e-60 235.7 131 88.5
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 2.6e-60 235.3 130 86.9
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 2.6e-60 235.3 130 86.9
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 2.6e-60 235.3 130 86.9
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 5.9e-60 234.2 130 86.2
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 5.9e-60 234.2 131 87.0
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 1.0e-59 233.4 130 86.9
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 1.0e-59 233.4 131 85.5
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.0e-59 233.4 131 87.0
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 1.7e-59 232.6 131 87.0
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 2.2e-59 232.3 130 87.7
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 8.5e-59 230.3 131 85.5
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 8.5e-59 230.3 131 85.5
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 8.5e-59 230.3 130 86.9
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 8.5e-59 230.3 133 85.7
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 1.1e-58 229.9 131 84.0
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 1.4e-58 229.6 130 86.9
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 1.4e-58 229.6 130 86.9
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 2.5e-58 228.8 128 85.9
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 2.5e-58 228.8 130 86.9
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.2e-58 228.4 154 75.3
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 3.2e-58 228.4 133 84.2
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 4.2e-58 228.0 129 84.5
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 5.5e-58 227.6 130 85.4
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 9.4e-58 226.9 130 85.4
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 1.6e-57 226.1 130 85.4
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 6.1e-57 224.2 130 85.4
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 6.1e-57 224.2 123 87.8
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 6.1e-57 224.2 130 85.4
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 2.3e-56 222.2 131 84.0
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 8.8e-56 220.3 128 82.8
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 2.0e-55 219.2 132 80.3
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 1.3e-54 216.5 132 79.5
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.7e-54 216.1 162 71.0
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 4.8e-54 214.5 162 70.4
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 1.1e-50 203.4 195 57.4
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.1e-50 203.4 129 76.0
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 9.4e-50 200.3 131 72.5
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 2.1e-49 199.1 131 79.4
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 2.7e-49 198.7 127 76.4
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 4.7e-49 198.0 129 72.9
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 7.9e-49 197.2 131 78.6
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 9.7e-47 190.3 102 87.3
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 1.3e-46 189.9 133 77.4
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.8e-46 188.7 131 75.6
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 2.8e-46 188.7 132 65.9
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 6.3e-46 187.6 130 66.2
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 8.2e-46 187.2 123 70.7
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.5e-44 183.0 130 68.5
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 5.5e-42 174.5 87 100.0
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 8.0e-41 170.6 110 73.6
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 3.0e-40 168.7 130 61.5
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 6.7e-40 167.5 88 95.5
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 8.8e-40 167.2 138 68.1
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 1.5e-39 166.4 88 95.5
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 1.4e-37 159.8 88 90.9
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 2.4e-37 159.1 88 89.8
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.2e-36 156.8 92 82.6
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 5.9e-36 154.5 79 89.9
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.8e-35 151.8 85 82.4
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 9.4e-34 147.1 85 81.2
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 9.4e-34 147.1 135 62.2
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 8.0e-33 144.1 86 82.6
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 1.8e-32 142.9 86 81.4
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 1.8e-32 142.9 86 81.4
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 2.3e-32 142.5 71 94.4
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.2e-31 140.2 87 79.3
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.2e-31 140.2 85 81.2
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.7e-30 136.3 75 84.0
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 8.3e-30 134.0 100 72.0
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 9.1e-29 130.6 89 76.4
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.6e-28 129.8 68 86.8
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 4.5e-28 128.3 80 81.2
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 1.0e-24 117.1 65 81.5
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 2.7e-20 102.4 86 59.3
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 3.8e-19 98.6 86 62.8
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 2.8e-17 92.4 46 89.1
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 8.0e-17 90.9 76 57.9
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 5.2e-16 88.2 45 84.4
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 1.1e-13 80.5 56 76.8
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 1.2e-09 67.0 42 76.2
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 4.7e-09 65.1 41 70.7
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 6.1e-09 64.7 47 70.2


User provided reference genes

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