Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002746g0040 Nicotiana tabacum HOM05D003084 ORTHO05D003580 7.3e-36 153.3 74 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
Nn4g23295 Nelumbo nucifera HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
HPP92_010409 Vanilla planifolia HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 5.1e-29 130.6 80 82.5
Atru.chr2.3187 Acer truncatum HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
Atru.chr2.3199 Acer truncatum HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
Atru.chr7.2125 Acer truncatum HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
Actinidia38789 Actinidia chinensis HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 1.1e-28 129.4 80 81.2
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 1.5e-28 129.0 80 81.2
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 1.5e-28 129.0 80 81.2
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 1.5e-28 129.0 80 81.2
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 1.5e-28 129.0 80 81.2
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 1.5e-28 129.0 80 81.2
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.5e-28 129.0 80 81.2
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.5e-28 129.0 80 81.2
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.5e-28 129.0 80 81.2
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 1.5e-28 129.0 80 81.2
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 1.5e-28 129.0 80 81.2
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 1.5e-28 129.0 80 81.2
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 1.5e-28 129.0 80 81.2
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 1.9e-28 128.6 80 80.0
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 2.5e-28 128.3 80 81.2
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 2.5e-28 128.3 80 80.0
HPP92_010359 Vanilla planifolia HOM05D003084 ORTHO05D003580 2.5e-28 128.3 80 81.2
ATR0307G103 Amborella trichopoda HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 81.2
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
Glyma.13G229200 Glycine max HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 3.3e-28 127.9 80 80.0
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 4.3e-28 127.5 80 80.0
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 4.3e-28 127.5 80 80.0
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 4.3e-28 127.5 80 80.0
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 4.3e-28 127.5 80 80.0
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 5.6e-28 127.1 80 78.8
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 5.6e-28 127.1 80 78.8
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 5.6e-28 127.1 80 78.8
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 5.6e-28 127.1 80 78.8
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 5.6e-28 127.1 80 80.0
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 7.3e-28 126.7 80 78.8
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 9.6e-28 126.3 80 80.0
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 1.3e-27 125.9 80 77.5
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 1.3e-27 125.9 80 77.5
PGSC0003DMG400009195 Solanum tuberosum HOM05D003084 ORTHO05D003580 1.3e-27 125.9 80 78.8
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 1.3e-27 125.9 80 78.8
HPP92_019915 Vanilla planifolia HOM05D003084 ORTHO05D003580 1.3e-27 125.9 80 81.2
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 1.6e-27 125.6 80 78.8
Migut.D02560 Erythranthe guttata HOM05D003084 ORTHO05D003580 2.1e-27 125.2 80 78.8
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 2.1e-27 125.2 80 78.8
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 2.1e-27 125.2 80 78.8
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 2.8e-27 124.8 80 78.8
HPP92_010380 Vanilla planifolia HOM05D003084 ORTHO05D003580 3.6e-27 124.4 80 80.0
BcaB04g19963 Brassica carinata HOM05D003084 ORTHO05D003580 8.1e-27 123.2 80 75.0
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 8.1e-27 123.2 80 75.0
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 8.1e-27 123.2 80 75.0
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 8.1e-27 123.2 80 75.0
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 8.1e-27 123.2 80 75.0
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 1.5e-25 119.0 80 75.0
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 1.5e-25 119.0 80 75.0
C03p62000 Brassica napus HOM05D003084 ORTHO05D003580 5.8e-25 117.1 80 73.8
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 5.8e-25 117.1 80 73.8
Carub.0013s0010 Capsella rubella HOM05D003084 ORTHO05D003580 5.8e-25 117.1 80 72.5
FvH4_3g24440 Fragaria vesca HOM05D003084 ORTHO05D003580 7.6e-25 116.7 80 73.8
FAN11G1592 Fragaria x ananassa HOM05D003084 ORTHO05D003580 7.6e-25 116.7 80 73.8
FAN21G2367 Fragaria x ananassa HOM05D003084 ORTHO05D003580 7.6e-25 116.7 80 73.8
ATR0618G025 Amborella trichopoda HOM05D003084 ORTHO05D003580 1.3e-24 115.9 79 73.4
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 2.2e-24 115.2 59 86.4
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 2.9e-24 114.8 80 72.5
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 2.9e-24 114.8 80 71.2
DCAR_026292 Daucus carota HOM05D003084 ORTHO05D003580 3.8e-24 114.4 80 71.2
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 3.8e-24 114.4 108 60.2
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 8.4e-24 113.2 80 71.2
DCAR_017867 Daucus carota HOM05D003084 ORTHO05D003580 2.4e-23 111.7 80 70.0
RcHm_v2.0_Chr5g0043941 Rosa chinensis HOM05D003084 ORTHO05D003580 4.2e-23 110.9 59 86.4
Cre12.g494100 Chlamydomonas reinhardtii HOM05D003084 ORTHO05D003580 7.1e-23 110.2 80 66.2
MCO09G793 Micromonas commoda HOM05D003084 ORTHO05D003580 2.7e-22 108.2 80 67.5
Os02g0478900 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 1.3e-21 105.9 79 65.8
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 1.7e-21 105.5 80 68.8
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 7.3e-20 100.1 66 78.8
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 1.1e-18 96.3 83 62.7
Cfa022297 Carpinus fangiana HOM05D003084 ORTHO05D003580 1.1e-18 96.3 80 61.2
Solyc07g041790.1 Solanum lycopersicum HOM05D003084 ORTHO05D003580 5.3e-18 94.0 71 71.8
PRCOL_00002641 Prasinoderma coloniale HOM05D003084 ORTHO05D003580 1.5e-17 92.4 80 58.8
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 4.5e-17 90.9 81 53.1
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 7.6e-17 90.1 81 53.1
DCAR_024485 Daucus carota HOM05D003084 ORTHO05D003580 1.7e-16 89.0 81 58.0
DCAR_028101 Daucus carota HOM05D003084 ORTHO05D003580 5.4e-15 84.0 81 56.8
Rhsim09G0053300 Rhododendron simsii HOM05D003084 ORTHO05D003580 1.6e-14 82.4 60 73.3
Sopen07g021280 Solanum pennellii HOM05D003084 ORTHO05D003580 3.1e-10 68.2 58 69.0
Dinv04118 Davidia involucrata HOM05D003084 ORTHO05D003580 1.0e-08 63.2 70 50.0
Aqoxy7G00614 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 8.4e-08 60.1 85 44.7
Aqoxy1G02836 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 1.9e-07 58.9 81 42.0
Aqoxy6G00957 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 1.9e-07 58.9 81 42.0
Aqoxy7G00613 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 1.9e-07 58.9 81 42.0
QL09p053393 Quercus lobata HOM05D003084 ORTHO05D003580 2.5e-07 58.5 31 83.9
PGSC0003DMG400019022 Solanum tuberosum HOM05D003084 ORTHO05D003580 1.2e-06 56.2 24 95.8
PGSC0003DMG400043641 Solanum tuberosum HOM05D003084 ORTHO05D003580 2.7e-06 55.1 24 91.7


User provided reference genes

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