Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1689.1 868 100.0
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1301.6 1092 67.5
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1292.3 1093 67.3
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1223.4 1207 61.1
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1128.2 1095 57.8
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1115.9 1098 56.9
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1106.7 1106 57.1
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1083.9 1101 55.5
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1083.6 1097 56.0
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1081.2 1152 54.7
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1080.9 1109 55.6
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1079.7 1115 55.4
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1077.4 1022 58.7
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 1.5e-310 1069.3 1110 54.5
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 2.6e-310 1068.5 1095 55.5
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 3.4e-310 1068.1 1098 55.3
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 2.9e-309 1065.1 1093 56.0
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 4.2e-308 1061.2 1099 55.0
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 5.5e-308 1060.8 1096 55.1
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 1.2e-307 1059.7 1098 55.1
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 2.1e-307 1058.9 1098 54.4
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 5.1e-306 1054.3 1099 54.9
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 1.5e-305 1052.7 1100 54.1
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 2.0e-305 1052.4 1102 55.0
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 3.3e-305 1051.6 1098 55.0
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 4.3e-305 1051.2 1098 54.9
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 6.3e-304 1047.3 1102 54.9
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 8.2e-304 1047.0 1098 54.8
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 1.8e-303 1045.8 1120 54.6
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 2.4e-303 1045.4 1103 54.6
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 3.1e-303 1045.0 1107 54.4
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 1.3e-301 1039.6 1108 54.1
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 3.8e-301 1038.1 1103 54.4
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 1.9e-300 1035.8 1142 55.3
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 3.2e-300 1035.0 1185 51.8
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 7.2e-300 1033.9 1100 55.3
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 7.9e-299 1030.4 1099 53.9
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 1.0e-298 1030.0 1096 53.6
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 8.8e-298 1026.9 1098 53.3
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 3.3e-297 1025.0 1101 52.8
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 2.2e-296 1022.3 1099 53.6
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 7.0e-295 1017.3 1141 52.8
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 7.0e-295 1017.3 959 58.4
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 1.2e-294 1016.5 1093 52.7
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 4.5e-294 1014.6 984 58.3
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 3.2e-292 1008.4 1100 52.5
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 4.7e-291 1004.6 1093 52.4
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 1.4e-290 1003.0 1109 52.5
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 6.7e-290 1000.7 1110 52.6
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 1.8e-287 992.6 1095 51.9
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 9.1e-287 990.3 1089 52.0
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.6e-286 989.6 1096 52.7
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 4.5e-286 988.0 1111 51.9
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.3e-285 986.5 1095 52.3
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 2.2e-285 985.7 1100 51.2
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 2.9e-285 985.3 1084 52.2
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 2.9e-285 985.3 1100 51.4
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 2.5e-284 982.2 1084 52.1
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 7.2e-284 980.7 1099 51.1
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 1.2e-283 979.9 1103 51.5
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 2.1e-283 979.2 1095 52.4
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 2.3e-282 975.7 1083 51.9
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 2.3e-282 975.7 1083 51.8
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 1.5e-281 973.0 1097 52.1
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 2.7e-278 962.2 1123 50.1
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 2.7e-275 952.2 996 53.9
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 5.7e-273 944.5 1128 50.2
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 7.3e-268 927.5 1034 51.3
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 2.1e-267 926.0 974 55.3
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 2.8e-267 925.6 1255 46.9
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 1.5e-265 919.8 973 54.1
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 1.7e-264 916.4 1055 50.0
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 2.2e-264 916.0 1092 51.0
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 3.7e-264 915.2 1013 51.4
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 6.4e-264 914.4 1031 50.1
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 3.0e-261 905.6 1024 51.4
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 8.6e-261 904.0 1022 53.1
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 9.5e-260 900.6 972 52.9
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 8.9e-258 894.0 1028 51.3
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 1.2e-238 830.5 1002 47.3
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 1.8e-234 816.6 1035 45.6
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 9.9e-233 810.8 841 54.1
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 1.3e-232 810.4 1108 45.3
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 2.9e-232 809.3 1028 46.2
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 1.2e-230 803.9 1029 46.8
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 6.9e-226 788.1 977 49.5
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 9.0e-226 787.7 869 52.0
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 2.5e-212 743.0 916 49.7
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 1.1e-210 737.6 1028 42.5
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 2.7e-190 669.8 1038 40.1
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 7.4e-180 635.2 1046 39.1
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 1.6e-177 627.5 620 55.6
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 2.2e-176 623.6 578 60.6
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 1.1e-175 621.3 749 47.3
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 9.7e-172 608.2 1038 37.7
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 4.8e-171 605.9 531 61.0
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 4.2e-167 592.8 518 62.7
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 9.8e-164 581.6 355 85.1
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 1.1e-133 481.9 646 47.2
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 1.8e-133 481.1 352 68.2
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 2.6e-132 477.2 354 66.7
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 9.9e-132 475.3 373 66.5
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.3e-127 460.3 336 67.0
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 2.4e-125 454.1 285 78.9
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 1.7e-123 448.0 406 62.3
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.4e-122 444.1 685 44.1
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 1.6e-121 441.4 326 74.8
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 5.1e-112 409.8 331 67.1
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 2.8e-110 404.1 342 65.5
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 1.5e-108 398.3 293 67.6
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 6.4e-99 366.3 423 50.4
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 4.5e-92 343.6 241 70.5
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.8e-88 331.6 617 41.5
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 2.3e-88 331.3 294 64.3
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 8.5e-67 259.6 243 60.5
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 3.9e-64 250.8 191 65.4
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.5e-63 248.8 245 53.9
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 2.5e-58 231.5 238 54.6
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 5.7e-55 220.3 255 45.1
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 1.5e-50 205.7 149 72.5
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 8.9e-40 169.9 167 63.5
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 7.8e-36 156.8 124 60.5
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 1.9e-34 152.1 142 58.5
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 9.5e-34 149.8 169 48.5
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.3e-32 145.2 112 62.5
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 3.7e-30 137.9 100 61.0
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 3.5e-28 131.3 123 61.0
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 3.5e-28 131.3 123 61.0
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 5.0e-27 127.5 90 66.7
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 2.0e-23 115.5 106 56.6
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 7.0e-21 107.1 79 67.1
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 4.6e-20 104.4 190 36.3
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 6.6e-19 100.5 72 66.7
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 2.3e-16 92.0 81 59.3
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 6.8e-16 90.5 69 62.3
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 3.4e-15 88.2 68 64.7
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 7.5e-15 87.0 74 52.7
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 8.3e-14 83.6 51 78.4
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 4.6e-12 77.8 67 61.2
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 2.3e-11 75.5 55 69.1
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 7.3e-10 70.5 60 60.0
CAN.G1473.1 Capsicum annuum HOM05D004422 ORTHO05D013213 4.0e-08 64.7 36 83.3
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 2.6e-07 62.0 49 65.3
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 1.3e-06 59.7 29 82.8


User provided reference genes

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