Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002672g0010 Nicotiana tabacum HOM05D004105 ORTHO05D029789 2.0e-194 682.2 332 100.0
Peaxi162Scf00334g00121 Petunia axillaris HOM05D004105 ORTHO05D005649 1.4e-139 500.0 413 65.9
Gohir.A07G048500 Gossypium hirsutum HOM05D004105 ORTHO05D005649 4.5e-133 478.4 413 62.7
Duzib084G0440 Durio zibethinus HOM05D004105 ORTHO05D005649 5.8e-133 478.0 413 62.5
Thecc.03G135100 Theobroma cacao HOM05D004105 ORTHO05D005649 2.2e-132 476.1 413 62.2
Gohir.D07G052800 Gossypium hirsutum HOM05D004105 ORTHO05D005649 2.9e-132 475.7 413 62.2
Gorai.001G055800 Gossypium raimondii HOM05D004105 ORTHO05D005649 4.9e-132 474.9 413 62.0
Peaxi162Scf00681g00117 Petunia axillaris HOM05D004105 ORTHO05D005649 4.9e-132 474.9 413 62.0
CiPaw.11G003700 Carya illinoinensis HOM05D004105 ORTHO05D005649 6.4e-132 474.6 413 62.7
TWI23G0168 Tripterygium wilfordii HOM05D004105 ORTHO05D005649 6.4e-132 474.6 413 62.5
ClCG09G016340 Citrullus lanatus HOM05D004105 ORTHO05D005649 1.2e-130 470.3 413 61.0
EL10Ac5g11355 Beta vulgaris HOM05D004105 ORTHO05D005649 2.1e-130 469.5 413 62.0
AUR62034822 Chenopodium quinoa HOM05D004105 ORTHO05D005649 2.1e-130 469.5 413 61.3
QL11p026924 Quercus lobata HOM05D004105 ORTHO05D005649 2.1e-130 469.5 412 61.7
THA.LOC104818177 Tarenaya hassleriana HOM05D004105 ORTHO05D005649 7.9e-130 467.6 416 61.8
CAN.G619.6 Capsicum annuum HOM05D004105 ORTHO05D005649 1.8e-129 466.5 413 62.2
DCAR_021646 Daucus carota HOM05D004105 ORTHO05D005649 1.8e-129 466.5 413 62.0
PGSC0003DMG400032546 Solanum tuberosum HOM05D004105 ORTHO05D005649 1.8e-129 466.5 413 61.7
CsaV3_7G007260 Cucumis sativus L. HOM05D004105 ORTHO05D005649 2.3e-129 466.1 413 60.8
MD06G1136900 Malus domestica HOM05D004105 ORTHO05D005649 2.3e-129 466.1 413 60.8
RcHm_v2.0_Chr7g0189421 Rosa chinensis HOM05D004105 ORTHO05D005649 3.0e-129 465.7 413 61.5
TWI39G0681 Tripterygium wilfordii HOM05D004105 ORTHO05D005649 3.9e-129 465.3 413 60.5
Sopen04g004330 Solanum pennellii HOM05D004105 ORTHO05D005649 5.1e-129 464.9 413 61.3
Actinidia08890 Actinidia chinensis HOM05D004105 ORTHO05D005649 6.7e-129 464.5 413 61.0
Ciclev10031414m.g Citrus clementina HOM05D004105 ORTHO05D005649 6.7e-129 464.5 413 60.0
FAN13G0496 Fragaria x ananassa HOM05D004105 ORTHO05D005649 8.7e-129 464.2 413 61.0
Potri.015G101100 Populus trichocarpa HOM05D004105 ORTHO05D005649 8.7e-129 464.2 413 60.5
AUR62029560 Chenopodium quinoa HOM05D004105 ORTHO05D005649 1.1e-128 463.8 407 61.2
Sed0023678 Sechium edule HOM05D004105 ORTHO05D005649 1.1e-128 463.8 413 59.8
MELO3C018572.2 Cucumis melo HOM05D004105 ORTHO05D005649 1.5e-128 463.4 413 60.5
FAN04G0399 Fragaria x ananassa HOM05D004105 ORTHO05D005649 1.5e-128 463.4 413 61.0
Manes.06G122800 Manihot esculenta HOM05D004105 ORTHO05D005649 1.5e-128 463.4 413 61.0
CSS0005977 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D005649 1.9e-128 463.0 413 61.0
CSS0020466 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D005649 1.9e-128 463.0 413 61.0
Atru.chr6.1872 Acer truncatum HOM05D004105 ORTHO05D005649 3.3e-128 462.2 413 60.8
Hma1.2p1_0572F.1_g181070 Hydrangea macrophylla HOM05D004105 ORTHO05D005649 3.3e-128 462.2 413 61.0
Rhsim08G0193500 Rhododendron simsii HOM05D004105 ORTHO05D005649 3.3e-128 462.2 413 60.3
FAN08G1339 Fragaria x ananassa HOM05D004105 ORTHO05D005649 5.6e-128 461.5 413 60.8
FAN18G1589 Fragaria x ananassa HOM05D004105 ORTHO05D005649 5.6e-128 461.5 413 60.8
Hund02468 Selenicereus undatus HOM05D004105 ORTHO05D005649 5.6e-128 461.5 407 61.2
Solyc04g009200.3 Solanum lycopersicum HOM05D004105 ORTHO05D005649 5.6e-128 461.5 413 61.0
FvH4_5g08950 Fragaria vesca HOM05D004105 ORTHO05D005649 9.6e-128 460.7 412 60.9
Lj9C482T3 Lonicera japonica HOM05D004105 ORTHO05D005649 1.6e-127 459.9 413 60.5
Cfa018749 Carpinus fangiana HOM05D004105 ORTHO05D005649 2.1e-127 459.5 413 61.0
Nn4g22230 Nelumbo nucifera HOM05D004105 ORTHO05D005649 2.8e-127 459.1 413 59.3
Lj1g0022155 Lotus japonicus HOM05D004105 ORTHO05D005649 6.2e-127 458.0 413 60.3
TAR371G1205 Trochodendron aralioides HOM05D004105 ORTHO05D005649 6.2e-127 458.0 413 60.0
unitig_32.g11186 Utricularia gibba HOM05D004105 ORTHO05D005649 6.2e-127 458.0 413 60.0
Haze_07185 Corylus avellana HOM05D004105 ORTHO05D005649 8.1e-127 457.6 413 60.5
Aa31LG1G18370 Aethionema arabicum HOM05D004105 ORTHO05D005649 1.1e-126 457.2 413 61.0
A09p08350 Brassica napus HOM05D004105 ORTHO05D005649 1.1e-126 457.2 413 60.8
Carub.0005s1489 Capsella rubella HOM05D004105 ORTHO05D005649 1.1e-126 457.2 413 61.3
VMungo1309G1206 Vigna mungo HOM05D004105 ORTHO05D005649 1.1e-126 457.2 413 59.1
AT3G48730 Arabidopsis thaliana HOM05D004105 ORTHO05D005649 1.4e-126 456.8 413 61.3
MD14G1151700 Malus domestica HOM05D004105 ORTHO05D005649 1.4e-126 456.8 413 59.3
arahy.Tifrunner.gnm1.ann1.26LP8U Arachis hypogaea HOM05D004105 ORTHO05D005649 1.8e-126 456.4 413 59.6
PSO017G4116 Papaver somniferum HOM05D004105 ORTHO05D005649 2.4e-126 456.1 413 60.3
PSO478G2355 Papaver somniferum HOM05D004105 ORTHO05D005649 2.4e-126 456.1 413 60.3
Sc04g0000430 Simmondsia chinensis HOM05D004105 ORTHO05D005649 3.1e-126 455.7 412 60.4
Dinv11203 Davidia involucrata HOM05D004105 ORTHO05D005649 4.0e-126 455.3 413 59.6
AL5G28210 Arabidopsis lyrata HOM05D004105 ORTHO05D005649 5.3e-126 454.9 413 60.8
BraA09t36484Z Brassica rapa HOM05D004105 ORTHO05D005649 6.9e-126 454.5 413 60.5
arahy.Tifrunner.gnm1.ann1.NV4Y6S Arachis hypogaea HOM05D004105 ORTHO05D005649 9.0e-126 454.1 413 59.1
BcaC04g23339 Brassica carinata HOM05D004105 ORTHO05D005649 9.0e-126 454.1 413 60.8
C09p09420 Brassica napus HOM05D004105 ORTHO05D005649 9.0e-126 454.1 413 60.8
CARHR277440 Cardamine hirsuta HOM05D004105 ORTHO05D005649 1.2e-125 453.8 413 60.5
HanXRQChr09g0273511 Helianthus annuus HOM05D004105 ORTHO05D005649 1.2e-125 453.8 413 60.8
Medtr3g118070 Medicago truncatula HOM05D004105 ORTHO05D005649 1.2e-125 453.8 413 58.8
BolC9t53854H Brassica oleracea HOM05D004105 ORTHO05D005649 1.5e-125 453.4 413 60.5
BcaB04g19926 Brassica carinata HOM05D004105 ORTHO05D005649 2.6e-125 452.6 413 60.5
Rhsim12G0177900 Rhododendron simsii HOM05D004105 ORTHO05D005649 2.6e-125 452.6 413 60.3
ECA247G3132 Erigeron canadensis HOM05D004105 ORTHO05D005649 3.4e-125 452.2 413 60.3
Phvul.009G118500 Phaseolus vulgaris HOM05D004105 ORTHO05D005649 3.4e-125 452.2 413 58.1
MSTRG.13687 Avicennia marina HOM05D004105 ORTHO05D005649 4.5e-125 451.8 413 59.8
A06p30190 Brassica napus HOM05D004105 ORTHO05D005649 5.8e-125 451.4 413 60.3
Ca_15293_v3 Cicer arietinum L. HOM05D004105 ORTHO05D005649 5.8e-125 451.4 413 59.1
Sp2g26660 Schrenkiella parvula HOM05D004105 ORTHO05D005649 5.8e-125 451.4 413 60.5
TPR.G38501 Trifolium pratense HOM05D004105 ORTHO05D005649 7.6e-125 451.1 413 58.6
Cc10_g12640 Coffea canephora HOM05D004105 ORTHO05D005649 9.9e-125 450.7 413 59.6
Psat5g001920 Pisum sativum HOM05D004105 ORTHO05D005649 1.3e-124 450.3 413 58.4
BraA06t25970Z Brassica rapa HOM05D004105 ORTHO05D005649 1.7e-124 449.9 413 60.0
Gohir.D03G112950 Gossypium hirsutum HOM05D004105 ORTHO05D005649 1.7e-124 449.9 395 60.8
BcaC01g02611 Brassica carinata HOM05D004105 ORTHO05D005649 2.2e-124 449.5 413 60.0
C03p62870 Brassica napus HOM05D004105 ORTHO05D005649 2.2e-124 449.5 413 60.0
BolC3t18541H Brassica oleracea HOM05D004105 ORTHO05D005649 2.2e-124 449.5 413 60.0
Thhalv10004138m.g Eutrema salsugineum HOM05D004105 ORTHO05D005649 2.2e-124 449.5 413 59.8
AL8G40650 Arabidopsis lyrata HOM05D004105 ORTHO05D005649 2.9e-124 449.1 413 59.8
BcaB02g09750 Brassica carinata HOM05D004105 ORTHO05D005649 2.9e-124 449.1 413 59.8
PGR083G1562 Punica granatum HOM05D004105 ORTHO05D005649 2.9e-124 449.1 413 59.1
Sp5g13290 Schrenkiella parvula HOM05D004105 ORTHO05D005649 2.9e-124 449.1 413 60.3
AT5G63570 Arabidopsis thaliana HOM05D004105 ORTHO05D005649 3.8e-124 448.7 413 59.8
Aqoxy3G01668 Aquilegia oxysepala HOM05D004105 ORTHO05D005649 4.9e-124 448.4 413 58.8
Glyma.06G002900 Glycine max HOM05D004105 ORTHO05D005649 6.4e-124 448.0 413 58.8
HanXRQChr02g0034141 Helianthus annuus HOM05D004105 ORTHO05D005649 6.4e-124 448.0 413 59.6
Gohir.A03G054100 Gossypium hirsutum HOM05D004105 ORTHO05D005649 8.4e-124 447.6 413 58.6
vmacro16732 Vaccinium macrocarpon HOM05D004105 ORTHO05D005649 1.1e-123 447.2 413 58.4
Carub.0008s2430 Capsella rubella HOM05D004105 ORTHO05D005649 1.4e-123 446.8 413 59.6
Glyma.04G002900 Glycine max HOM05D004105 ORTHO05D005649 1.9e-123 446.4 413 58.4
Gohir.A03G053920 Gossypium hirsutum HOM05D004105 ORTHO05D005649 1.9e-123 446.4 413 58.8
Gohir.D03G112900 Gossypium hirsutum HOM05D004105 ORTHO05D005649 1.9e-123 446.4 413 58.8
TAR622G0102 Trochodendron aralioides HOM05D004105 ORTHO05D005649 2.4e-123 446.0 413 58.4
Eucgr.K00727 Eucalyptus grandis HOM05D004105 ORTHO05D005649 4.2e-123 445.3 413 57.9
CDE05G1664 Ceratophyllum demersum HOM05D004105 ORTHO05D005649 5.5e-123 444.9 413 57.9
Lalb_Chr08g0246741 Lupinus albus HOM05D004105 ORTHO05D005649 7.1e-123 444.5 413 58.6
Gorai.003G119100 Gossypium raimondii HOM05D004105 ORTHO05D005649 9.3e-123 444.1 413 58.6
Sabra15G0121600 Salix brachista HOM05D004105 ORTHO05D005649 1.6e-122 443.4 456 55.0
Lsat_1_v5_gn_1_32701 Lactuca sativa HOM05D004105 ORTHO05D005649 3.5e-122 442.2 413 59.1
Zm00001eb291360 Zea mays HOM05D004105 ORTHO05D005649 1.8e-121 439.9 413 56.7
Os08g0532200 Oryza sativa ssp. japonica HOM05D004105 ORTHO05D005649 3.0e-121 439.1 413 56.7
ATR0582G244 Amborella trichopoda HOM05D004105 ORTHO05D005649 2.5e-120 436.0 413 56.7
SGA_v2.0_scaffold99G29471 Striga asiatica HOM05D004105 ORTHO05D005649 1.2e-117 427.2 407 56.0
MBI11_g13058_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 2.6e-117 426.0 409 56.7
arahy.Tifrunner.gnm1.ann1.M8Q52W Arachis hypogaea HOM05D004105 ORTHO05D005649 9.3e-115 417.5 413 55.9
SEGI_17449 Sequoiadendron giganteum HOM05D004105 ORTHO05D005649 1.6e-114 416.8 413 54.5
SMO337G0012 Selaginella moellendorffii HOM05D004105 ORTHO05D005649 7.9e-114 414.5 413 54.0
Nitab4.5_0011777g0030 Nicotiana tabacum HOM05D004105 ORTHO05D005649 1.6e-111 406.8 382 58.4
Actinidia18331 Actinidia chinensis HOM05D004105 ORTHO05D005649 3.1e-110 402.5 383 57.2
MBI04_g30438_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 6.9e-110 401.4 413 53.8
Pp3c27_4150 Physcomitrium patens HOM05D004105 ORTHO05D005649 1.2e-109 400.6 416 52.9
Pp3c16_12390 Physcomitrium patens HOM05D004105 ORTHO05D005649 1.0e-108 397.5 416 52.6
HPP92_000338 Vanilla planifolia HOM05D004105 ORTHO05D005649 5.0e-108 395.2 413 52.3
SHI10683 Sapria himalayana HOM05D004105 ORTHO05D005649 6.1e-106 388.3 433 50.6
Migut.E00706 Erythranthe guttata HOM05D004105 ORTHO05D005649 1.9e-104 383.3 398 56.5
GSVIVG01008589001 Vitis vinifera HOM05D004105 ORTHO05D005649 7.4e-104 381.3 413 53.5
Potri.012G103000 Populus trichocarpa HOM05D004105 ORTHO05D005649 6.3e-103 378.3 372 57.5
Haze_07186 Corylus avellana HOM05D004105 ORTHO05D005649 8.2e-103 377.9 381 57.2
MCO04G178 Micromonas commoda HOM05D004105 ORTHO05D005649 2.4e-102 376.3 415 50.1
AagrBONN_evm.TU.Sc2ySwM_368.3191 Anthoceros agrestis HOM05D004105 ORTHO05D005649 1.7e-100 370.2 413 50.1
ECA232G0449 Erigeron canadensis HOM05D004105 ORTHO05D005649 3.8e-100 369.0 373 56.6
Mapoly0094s0038 Marchantia polymorpha HOM05D004105 ORTHO05D005649 5.0e-100 368.6 413 50.1
AUR62005532 Chenopodium quinoa HOM05D004105 ORTHO05D005649 3.6e-98 362.5 427 51.1
Duzib205G0778 Durio zibethinus HOM05D004105 ORTHO05D005649 3.6e-98 362.5 357 57.7
Cre03.g158000 Chlamydomonas reinhardtii HOM05D004105 ORTHO05D005649 8.8e-97 357.8 415 49.2
Nitab4.5_0001089g0010 Nicotiana tabacum HOM05D004105 ORTHO05D005649 2.2e-95 353.2 349 56.7
Cpa.g.sc4.152 Carica papaya HOM05D004105 ORTHO05D005649 3.7e-95 352.4 357 56.6
Thhalv10010337m.g Eutrema salsugineum HOM05D004105 ORTHO05D005649 2.4e-94 349.7 356 56.5
PRCOL_00001317 Prasinoderma coloniale HOM05D004105 ORTHO05D005649 5.3e-94 348.6 413 49.2
Duzib068G0759 Durio zibethinus HOM05D004105 ORTHO05D005649 9.1e-94 347.8 357 55.7
Manes.14G048100 Manihot esculenta HOM05D004105 ORTHO05D005649 5.9e-93 345.1 357 54.9
Oeu036699.1 Olea europaea HOM05D004105 ORTHO05D005649 7.2e-91 338.2 348 54.0
Prupe.5G146800 Prunus persica HOM05D004105 ORTHO05D005649 6.1e-90 335.1 348 55.2
MBI04_g30114_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 4.4e-88 328.9 351 52.1
CBR_g49915 Chara braunii HOM05D004105 ORTHO05D005649 2.8e-79 299.7 358 48.3
Cfa018748 Carpinus fangiana HOM05D004105 ORTHO05D005649 1.8e-78 297.0 232 67.2
HanXRQChr16g0498371 Helianthus annuus HOM05D004105 ORTHO05D005649 1.5e-75 287.3 231 64.9
Dinv23185 Davidia involucrata HOM05D005705 ORTHO05D007152 1.9e-75 287.0 327 50.2
arahy.Tifrunner.gnm1.ann1.IMIB52 Arachis hypogaea HOM05D004105 ORTHO05D005649 2.0e-72 276.9 231 63.2
Migut.E00611 Erythranthe guttata HOM05D004105 ORTHO05D005649 2.6e-72 276.6 197 71.1
Actinidia36827 Actinidia chinensis HOM05D004105 ORTHO05D030951 4.3e-59 232.6 226 58.0
AUR62029559 Chenopodium quinoa HOM05D004105 ORTHO05D005649 4.1e-54 216.1 125 88.0
Nn3g16369 Nelumbo nucifera HOM05D004105 ORTHO05D005649 6.6e-52 208.8 202 58.4
QL11p026963 Quercus lobata HOM05D004105 ORTHO05D005649 3.7e-39 166.4 273 42.1
Actinidia36826 Actinidia chinensis HOM05D004105 ORTHO05D030859 2.4e-33 147.1 73 91.8
CDE02G1094 Ceratophyllum demersum HOM05D004105 ORTHO05D030951 5.2e-33 146.0 108 64.8
RcHm_v2.0_Chr7g0199581 Rosa chinensis HOM05D004105 ORTHO05D029789 1.6e-29 134.4 73 86.3
TAR629G2661 Trochodendron aralioides HOM05D004105 ORTHO05D005649 1.5e-27 127.9 87 67.8
RcHm_v2.0_Chr7g0199591 Rosa chinensis HOM05D004105 ORTHO05D005649 4.3e-27 126.3 111 57.7
Cpa.g.sc4.153 Carica papaya HOM05D004105 ORTHO05D030859 1.8e-25 120.9 59 89.8
CSS0046398 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D030951 2.4e-25 120.6 99 61.6
Lalb_Chr19g0131561 Lupinus albus HOM05D004105 ORTHO05D239630 3.5e-21 106.7 73 71.2
Glyma.14G221932 Glycine max HOM05D004105 ORTHO05D029789 1.8e-17 94.4 52 90.4
Sabra12G0075400 Salix brachista HOM05D004105 ORTHO05D005649 1.7e-15 87.8 172 36.6
Dinv23184 Davidia involucrata HOM05D004105 ORTHO05D030859 2.4e-14 84.0 43 83.7
TAR629G2294 Trochodendron aralioides HOM05D004105 ORTHO05D005649 3.2e-14 83.6 63 60.3
Psat3g146080 Pisum sativum HOM05D004105 ORTHO05D029789 1.2e-13 81.6 43 93.0
QL11p026928 Quercus lobata HOM05D004105 ORTHO05D337244 2.5e-11 73.9 47 72.3
CSS0032985 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D112895 4.8e-10 69.7 86 47.7
AUR62029557 Chenopodium quinoa HOM05D004105 ORTHO05D138218 4.8e-10 69.7 36 94.4
QL11p027046 Quercus lobata HOM05D004105 ORTHO05D337488 3.1e-09 67.0 44 70.5
PGR031G0489 Punica granatum HOM05D000826 ORTHO05D004603 5.5e-06 56.2 244 25.4


User provided reference genes

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