Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.7e-121 439.5 243 100.0
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.5e-114 416.4 243 93.8
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 2.8e-108 395.6 243 88.5
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 1.7e-105 386.3 243 87.2
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 8.4e-105 384.0 243 86.8
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.4e-104 382.5 242 87.6
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.5e-103 378.6 243 84.8
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.0e-102 377.1 243 80.7
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 4.3e-101 371.7 243 84.8
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.6e-100 369.8 242 83.1
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.8e-100 369.0 243 83.5
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 1.4e-99 366.7 243 82.3
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 2.3e-94 349.4 240 76.2
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 7.6e-90 334.3 205 82.4
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 1.3e-89 333.6 243 77.0
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 1.3e-89 333.6 244 73.4
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 2.9e-89 332.4 243 77.0
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 4.9e-89 331.6 241 72.2
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 6.4e-89 331.3 206 81.1
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 2.4e-88 329.3 241 76.8
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 5.4e-88 328.2 243 74.9
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 5.4e-88 328.2 206 80.1
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 7.1e-88 327.8 243 75.7
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 9.3e-88 327.4 238 71.8
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 2.1e-87 326.2 203 81.8
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 4.6e-87 325.1 209 77.5
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 4.6e-87 325.1 241 71.4
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 4.6e-87 325.1 243 74.9
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 1.0e-86 323.9 241 69.7
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 1.3e-86 323.6 241 76.8
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 2.3e-86 322.8 243 69.1
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 3.0e-86 322.4 246 67.5
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 3.9e-86 322.0 240 70.0
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 3.9e-86 322.0 243 72.4
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 5.1e-86 321.6 206 80.1
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 1.1e-85 320.5 241 72.6
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 1.5e-85 320.1 243 72.0
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 1.5e-85 320.1 243 71.2
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.5e-85 320.1 206 78.6
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 1.9e-85 319.7 205 80.5
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 7.4e-85 317.8 229 78.2
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 7.4e-85 317.8 240 68.3
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 1.3e-84 317.0 242 66.5
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 1.6e-84 316.6 241 73.0
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 2.1e-84 316.2 243 67.5
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 2.8e-84 315.8 234 70.9
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 2.8e-84 315.8 206 77.7
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 3.7e-84 315.5 241 69.3
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 6.2e-84 314.7 243 67.1
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 8.1e-84 314.3 241 68.0
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 1.1e-83 313.9 206 77.7
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 1.1e-83 313.9 240 72.5
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 1.1e-83 313.9 203 77.3
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 1.4e-83 313.5 241 68.0
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.4e-83 313.5 241 67.6
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 2.4e-83 312.8 241 73.9
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 2.4e-83 312.8 240 72.5
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 2.4e-83 312.8 205 77.6
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 3.1e-83 312.4 237 73.0
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 5.3e-83 311.6 241 67.6
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 6.9e-83 311.2 239 71.5
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 1.2e-82 310.5 205 76.6
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 1.2e-82 310.5 203 78.3
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 1.2e-82 310.5 239 72.0
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 1.5e-82 310.1 198 80.3
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.6e-82 309.3 191 83.8
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 2.6e-82 309.3 243 65.4
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.6e-82 309.3 241 67.2
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 2.6e-82 309.3 252 65.9
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.6e-82 309.3 206 76.2
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 4.5e-82 308.5 202 77.7
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 5.8e-82 308.1 205 77.6
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 7.6e-82 307.8 240 71.7
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 9.9e-82 307.4 200 76.5
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 1.7e-81 306.6 199 78.4
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 1.7e-81 306.6 239 71.5
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 3.8e-81 305.4 205 74.1
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 4.9e-81 305.1 203 75.9
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 1.4e-80 303.5 241 71.0
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 1.4e-80 303.5 241 71.0
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.4e-80 303.5 241 67.2
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.9e-80 303.1 211 72.0
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 3.2e-80 302.4 241 70.1
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 9.3e-80 300.8 241 67.6
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 1.6e-79 300.1 202 76.2
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.6e-79 300.1 203 74.9
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 2.7e-79 299.3 204 74.5
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 4.6e-79 298.5 241 67.6
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 4.6e-79 298.5 200 75.0
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 7.9e-79 297.7 195 77.9
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 1.3e-78 297.0 206 76.2
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 2.3e-78 296.2 208 72.6
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 2.3e-78 296.2 234 70.9
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 6.7e-78 294.7 196 78.1
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 8.7e-78 294.3 213 72.3
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 8.7e-78 294.3 244 64.8
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 3.3e-77 292.4 213 71.8
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 7.4e-77 291.2 243 65.8
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 7.4e-77 291.2 245 63.7
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 9.6e-77 290.8 205 71.2
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.6e-76 290.0 198 72.7
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 1.6e-76 290.0 243 69.1
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 2.8e-76 289.3 244 66.8
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 6.2e-76 288.1 211 78.7
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 6.2e-76 288.1 229 69.4
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 1.1e-75 287.3 208 70.2
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 1.4e-75 287.0 246 67.1
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 1.4e-75 287.0 245 63.3
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.4e-75 286.2 245 62.9
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 2.4e-75 286.2 243 65.4
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 6.9e-75 284.6 245 62.9
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 2.6e-74 282.7 245 62.9
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 3.4e-74 282.3 211 67.8
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 5.8e-74 281.6 245 62.0
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 1.0e-73 280.8 214 67.3
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 1.0e-73 280.8 214 67.3
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 4.9e-73 278.5 214 66.8
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 4.9e-73 278.5 214 66.8
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 1.9e-72 276.6 204 70.1
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 1.2e-71 273.9 183 76.5
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 1.6e-68 263.5 198 67.2
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 6.3e-68 261.5 209 62.7
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 3.4e-66 255.8 197 67.5
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.7e-65 253.4 178 70.2
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 1.8e-62 243.4 198 64.1
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 1.7e-57 226.9 157 73.2
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 1.8e-54 216.9 212 57.5
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 2.3e-54 216.5 191 62.3
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 1.1e-53 214.2 245 53.1
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 7.7e-50 201.4 171 66.1
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 1.1e-43 181.0 133 69.2
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 8.5e-41 171.4 110 71.8
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 1.1e-40 171.0 212 49.5
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 6.1e-39 165.2 176 51.1
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 3.7e-36 156.0 173 49.7
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 4.7e-31 139.0 102 62.7
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 2.3e-30 136.7 91 87.9
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 2.2e-28 130.2 188 40.4
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 2.4e-27 126.7 130 56.9
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 5.5e-24 115.5 86 64.0
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 5.4e-19 99.0 91 60.4
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 1.5e-16 90.9 183 31.7
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 1.5e-13 80.9 61 67.2
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 3.7e-12 76.3 188 29.3
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 2.3e-09 67.0 80 50.0
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 7.3e-08 62.0 83 43.4
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 8.9e-06 55.1 63 52.4


User provided reference genes

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