Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002495g0010 Nicotiana tabacum HOM05D003098 ORTHO05D003634 1.6e-112 409.5 210 100.0
Nitab4.5_0005080g0040 Nicotiana tabacum HOM05D003098 ORTHO05D003634 4.4e-102 374.8 214 91.1
Solyc07g056630.3 Solanum lycopersicum HOM05D003098 ORTHO05D003634 3.9e-90 335.1 216 83.8
Sopen00g007320 Solanum pennellii HOM05D003098 ORTHO05D003634 3.9e-90 335.1 219 82.6
Sopen07g029980 Solanum pennellii HOM05D003098 ORTHO05D003634 6.6e-90 334.3 216 83.8
CAN.G1003.6 Capsicum annuum HOM05D003098 ORTHO05D003634 1.5e-89 333.2 217 81.6
Peaxi162Scf00111g00826 Petunia axillaris HOM05D003098 ORTHO05D003634 2.8e-88 328.9 214 81.8
SalBow8G0445 Salvia bowleyana HOM05D003098 ORTHO05D003634 3.4e-54 215.7 225 58.2
Dinv13310 Davidia involucrata HOM05D003098 ORTHO05D003634 2.4e-52 209.5 221 57.5
SalBow8G0143 Salvia bowleyana HOM05D003098 ORTHO05D003634 4.6e-51 205.3 220 57.7
Lj1A810G57 Lonicera japonica HOM05D003098 ORTHO05D003634 5.1e-50 201.8 218 56.4
Cc05_g10240 Coffea canephora HOM05D003098 ORTHO05D003634 8.7e-50 201.1 218 57.8
Oeu009883.1 Olea europaea HOM05D003098 ORTHO05D003634 2.8e-48 196.1 209 57.9
MSTRG.15009 Avicennia marina HOM05D003098 ORTHO05D003634 3.6e-48 195.7 218 54.1
Ciclev10020251m.g Citrus clementina HOM05D003098 ORTHO05D003634 4.8e-48 195.3 229 52.8
CiPaw.11G068300 Carya illinoinensis HOM05D003098 ORTHO05D003634 2.4e-47 193.0 214 58.9
COL.COLO4_17417 Corchorus olitorius HOM05D003098 ORTHO05D003634 1.9e-44 183.3 220 53.6
Potri.001G378000 Populus trichocarpa HOM05D003098 ORTHO05D003634 3.2e-44 182.6 223 52.5
Hma1.2p1_1456F.1_g284580 Hydrangea macrophylla HOM05D003098 ORTHO05D003634 1.2e-43 180.6 215 54.0
TAR627G0095 Trochodendron aralioides HOM05D003098 ORTHO05D003634 2.1e-43 179.9 213 54.9
Eucgr.F03204 Eucalyptus grandis HOM05D003098 ORTHO05D003634 3.5e-43 179.1 220 52.3
Rhsim06G0184800 Rhododendron simsii HOM05D003098 ORTHO05D003634 3.5e-43 179.1 222 53.2
QL04p070282 Quercus lobata HOM05D003098 ORTHO05D003634 4.6e-43 178.7 203 56.7
Atru.chr2.1895 Acer truncatum HOM05D003098 ORTHO05D003634 1.8e-42 176.8 220 52.7
DCAR_021056 Daucus carota HOM05D003098 ORTHO05D003634 6.7e-42 174.9 223 52.0
Hma1.2p1_0325F.1_g125950 Hydrangea macrophylla HOM05D003098 ORTHO05D003634 6.7e-42 174.9 219 51.1
Thecc.07G146500 Theobroma cacao HOM05D003098 ORTHO05D003634 1.5e-41 173.7 220 51.8
MSTRG.6711 Avicennia marina HOM05D003098 ORTHO05D003634 5.6e-41 171.8 203 53.7
TWI38G0376 Tripterygium wilfordii HOM05D003098 ORTHO05D003634 5.6e-41 171.8 218 51.8
TWI38G1646 Tripterygium wilfordii HOM05D003098 ORTHO05D003634 5.6e-41 171.8 218 51.8
Ca_03391_v3 Cicer arietinum L. HOM05D003098 ORTHO05D003634 9.6e-41 171.0 223 50.7
Duzib187G1141 Durio zibethinus HOM05D003098 ORTHO05D003634 9.6e-41 171.0 222 49.5
Duzib268G0819 Durio zibethinus HOM05D003098 ORTHO05D003634 1.3e-40 170.6 221 51.1
vmacro12016 Vaccinium macrocarpon HOM05D003098 ORTHO05D003634 1.6e-40 170.2 220 53.6
Cfa019454 Carpinus fangiana HOM05D003098 ORTHO05D003634 2.1e-40 169.9 211 53.6
Potri.011G096000 Populus trichocarpa HOM05D003098 ORTHO05D003634 3.7e-40 169.1 222 50.5
Actinidia12840 Actinidia chinensis HOM05D003098 ORTHO05D003634 1.1e-39 167.5 217 52.1
Manes.15G101000 Manihot esculenta HOM05D003098 ORTHO05D003634 1.8e-39 166.8 228 48.7
CANSAT94G0015 Cannabis sativa HOM05D003098 ORTHO05D003634 2.4e-39 166.4 219 49.3
Cpa.g.sc77.97 Carica papaya HOM05D003098 ORTHO05D003634 4.0e-39 165.6 222 52.3
Haze_08492 Corylus avellana HOM05D003098 ORTHO05D003634 4.0e-39 165.6 233 49.8
Actinidia18845 Actinidia chinensis HOM05D003098 ORTHO05D003634 5.3e-39 165.2 210 51.9
MD10G1195000 Malus domestica HOM05D003098 ORTHO05D003634 5.3e-39 165.2 219 50.7
Medtr2g070630 Medicago truncatula HOM05D003098 ORTHO05D003634 9.0e-39 164.5 223 52.0
MBI07_g23222_MAGBIO Magnolia biondii HOM05D003098 ORTHO05D003634 1.5e-38 163.7 213 51.6
Glyma.15G249000 Glycine max HOM05D003098 ORTHO05D003634 2.0e-38 163.3 222 50.9
MD05G1208500 Malus domestica HOM05D003098 ORTHO05D003634 2.0e-38 163.3 218 50.5
Prupe.4G148900 Prunus persica HOM05D003098 ORTHO05D003634 2.0e-38 163.3 220 51.4
RcHm_v2.0_Chr5g0027751 Rosa chinensis HOM05D003098 ORTHO05D003634 4.5e-38 162.2 219 48.9
TAR626G1321 Trochodendron aralioides HOM05D003098 ORTHO05D003634 4.5e-38 162.2 216 48.6
Lalb_Chr01g0016081 Lupinus albus HOM05D003098 ORTHO05D003634 5.8e-38 161.8 222 51.8
CsaV3_4G007810 Cucumis sativus L. HOM05D003098 ORTHO05D003634 7.6e-38 161.4 230 49.1
Phvul.005G060550 Phaseolus vulgaris HOM05D003098 ORTHO05D003634 7.6e-38 161.4 220 50.5
Glyma.13G259100 Glycine max HOM05D003098 ORTHO05D003634 1.3e-37 160.6 225 49.3
Lj3g0011437 Lotus japonicus HOM05D003098 ORTHO05D003634 1.3e-37 160.6 221 49.8
Psat1g001120 Pisum sativum HOM05D003098 ORTHO05D003634 1.3e-37 160.6 222 50.0
Sabra16G0249000 Salix brachista HOM05D003098 ORTHO05D003634 1.3e-37 160.6 223 51.1
Dinv26666 Davidia involucrata HOM05D003098 ORTHO05D003634 3.8e-37 159.1 219 47.5
arahy.Tifrunner.gnm1.ann1.A6UZA5 Arachis hypogaea HOM05D003098 ORTHO05D003634 8.4e-37 157.9 218 50.0
arahy.Tifrunner.gnm1.ann1.PZE2NF Arachis hypogaea HOM05D003098 ORTHO05D003634 8.4e-37 157.9 218 50.0
MELO3C016154.2 Cucumis melo HOM05D003098 ORTHO05D003634 1.9e-36 156.8 230 45.7
Duzib213G0182 Durio zibethinus HOM05D003098 ORTHO05D003634 4.2e-36 155.6 219 47.5
TAR629G0752 Trochodendron aralioides HOM05D003098 ORTHO05D003634 5.5e-36 155.2 217 49.8
Gohir.A13G152100 Gossypium hirsutum HOM05D003098 ORTHO05D003634 9.3e-36 154.5 228 46.9
FAN16G2875 Fragaria x ananassa HOM05D003098 ORTHO05D003634 3.0e-34 149.4 219 45.7
Sed0018273 Sechium edule HOM05D003098 ORTHO05D003634 3.9e-34 149.1 227 46.3
FvH4_3g16610 Fragaria vesca HOM05D003098 ORTHO05D003634 5.1e-34 148.7 219 45.7
FAN11G1214 Fragaria x ananassa HOM05D003098 ORTHO05D003634 5.1e-34 148.7 219 45.7
GSVIVG01038087001 Vitis vinifera HOM05D003098 ORTHO05D003634 8.7e-34 147.9 214 49.5
Lalb_Chr25g0285391 Lupinus albus HOM05D003098 ORTHO05D003634 1.1e-33 147.5 218 48.2
FAN25G3533 Fragaria x ananassa HOM05D003098 ORTHO05D003634 1.5e-33 147.1 219 45.2
Oeu050692.2 Olea europaea HOM05D003098 ORTHO05D003634 1.5e-33 147.1 215 44.7
DCAR_013797 Daucus carota HOM05D003098 ORTHO05D003634 1.9e-33 146.7 217 48.8
Gohir.D13G156400 Gossypium hirsutum HOM05D003098 ORTHO05D003634 1.9e-33 146.7 234 43.6
Gorai.013G177000 Gossypium raimondii HOM05D003098 ORTHO05D003634 3.3e-33 146.0 234 43.6
Sed0021570 Sechium edule HOM05D003098 ORTHO05D003634 5.7e-33 145.2 228 46.1
Actinidia35176 Actinidia chinensis HOM05D003098 ORTHO05D003634 1.3e-32 144.1 214 49.1
PSO541G6535 Papaver somniferum HOM05D003098 ORTHO05D003634 1.3e-32 144.1 230 45.2
ClCG07G010480 Citrullus lanatus HOM05D003098 ORTHO05D003634 1.6e-32 143.7 229 45.4
FAN21G2223 Fragaria x ananassa HOM05D003098 ORTHO05D003634 1.6e-32 143.7 219 44.7
MBI10_g30422_MAGBIO Magnolia biondii HOM05D003098 ORTHO05D003634 1.6e-32 143.7 221 47.1
PGR031G0814 Punica granatum HOM05D003098 ORTHO05D003634 1.6e-32 143.7 221 47.5
SGA_v2.0_scaffold73G24350 Striga asiatica HOM05D003098 ORTHO05D003634 3.7e-32 142.5 221 48.0
Gohir.D05G335700 Gossypium hirsutum HOM05D003098 ORTHO05D003634 4.8e-32 142.1 222 45.9
Gorai.009G359400 Gossypium raimondii HOM05D003098 ORTHO05D003634 4.8e-32 142.1 222 45.9
Aqoxy1G01700 Aquilegia oxysepala HOM05D003098 ORTHO05D003634 6.2e-32 141.7 218 46.3
PSO675G2036 Papaver somniferum HOM05D003098 ORTHO05D003634 8.2e-32 141.4 224 45.5
Sabra11G0092900 Salix brachista HOM05D003098 ORTHO05D003634 1.4e-31 140.6 203 48.8
Gohir.A04G046600 Gossypium hirsutum HOM05D003098 ORTHO05D003634 5.3e-31 138.7 222 45.5
AUR62037970 Chenopodium quinoa HOM05D003098 ORTHO05D003634 6.9e-31 138.3 299 39.5
Nn3g20785 Nelumbo nucifera HOM05D003098 ORTHO05D003634 9.0e-31 137.9 218 45.9
AUR62041781 Chenopodium quinoa HOM05D003098 ORTHO05D003634 1.2e-30 137.5 278 41.4
SGA_v2.0_scaffold181G39782 Striga asiatica HOM05D003098 ORTHO05D003634 1.2e-30 137.5 215 49.8
Actinidia04592 Actinidia chinensis HOM05D003098 ORTHO05D003634 4.2e-28 129.0 162 53.1
Gorai.002G038700 Gossypium raimondii HOM05D003098 ORTHO05D003634 5.5e-28 128.6 219 43.4
Hund02321 Selenicereus undatus HOM05D003098 ORTHO05D003634 7.1e-28 128.3 288 36.8
Gohir.A01G041800 Gossypium hirsutum HOM05D003098 ORTHO05D003634 2.7e-27 126.3 219 42.9
Gohir.D01G029400 Gossypium hirsutum HOM05D003098 ORTHO05D003634 3.5e-27 125.9 219 42.5
THA.LOC104808077 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 6.1e-27 125.2 217 45.6
unitig_62.g23089 Utricularia gibba HOM05D003098 ORTHO05D003634 7.9e-27 124.8 170 49.4
Nn4g26567 Nelumbo nucifera HOM05D003098 ORTHO05D003634 3.9e-26 122.5 220 41.4
Lalb_Chr03g0031451 Lupinus albus HOM05D003098 ORTHO05D003634 8.7e-26 121.3 218 43.1
TPR.G26632 Trifolium pratense HOM05D003098 ORTHO05D003634 1.5e-25 120.6 220 41.4
ECA236G5036 Erigeron canadensis HOM05D003098 ORTHO05D003634 1.3e-24 117.5 213 44.6
HanXRQChr11g0330331 Helianthus annuus HOM05D003098 ORTHO05D003634 4.8e-24 115.5 219 42.5
Sc03g0007710 Simmondsia chinensis HOM05D003098 ORTHO05D003634 1.1e-23 114.4 259 38.2
Ah.04g163840 Amaranthus hybridus HOM05D003098 ORTHO05D003634 3.1e-23 112.8 321 35.8
EL10Ac4g08489 Beta vulgaris HOM05D003098 ORTHO05D003634 1.5e-22 110.5 323 34.1
THA.LOC104812290 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 1.5e-22 110.5 215 40.0
BcaB03g16017 Brassica carinata HOM05D003098 ORTHO05D003634 1.9e-20 103.6 217 41.5
BcaB05g25139 Brassica carinata HOM05D003098 ORTHO05D003634 2.5e-20 103.2 208 40.9
CSS0003040 Camellia sinensis var. sinensis HOM05D003098 ORTHO05D003634 6.7e-18 95.1 82 63.4
Migut.M00650 Erythranthe guttata HOM05D003098 ORTHO05D003634 1.5e-17 94.0 217 38.7
BcaC08g47416 Brassica carinata HOM05D003098 ORTHO05D003634 2.5e-17 93.2 211 37.0
C06p52360 Brassica napus HOM05D003098 ORTHO05D003634 2.5e-17 93.2 211 37.0
BolC6t40256H Brassica oleracea HOM05D003098 ORTHO05D003634 2.5e-17 93.2 211 36.5
Sp5g33520 Schrenkiella parvula HOM05D003098 ORTHO05D003634 4.3e-17 92.4 218 36.2
ECA234G0652 Erigeron canadensis HOM05D003098 ORTHO05D003634 5.7e-17 92.0 204 36.8
ATR0730G170 Amborella trichopoda HOM05D003098 ORTHO05D003634 9.7e-17 91.3 215 36.3
A07p43680 Brassica napus HOM05D003098 ORTHO05D003634 1.3e-16 90.9 217 37.8
BraA07t31880Z Brassica rapa HOM05D003098 ORTHO05D003634 1.3e-16 90.9 217 37.8
Zm00001eb376630 Zea mays HOM05D003098 ORTHO05D003634 1.3e-16 90.9 213 34.7
Lsat_1_v5_gn_7_101201 Lactuca sativa HOM05D003098 ORTHO05D003634 1.1e-15 87.8 231 37.2
SEGI_26890 Sequoiadendron giganteum HOM05D003098 ORTHO05D003634 1.8e-15 87.0 286 32.5
THA.LOC104813978 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 1.8e-15 87.0 171 40.9
CARHR071940 Cardamine hirsuta HOM05D003098 ORTHO05D003634 4.1e-15 85.9 224 39.3
AT1G78420 Arabidopsis thaliana HOM05D003098 ORTHO05D003634 6.9e-15 85.1 217 35.5
Oeu058426.1 Olea europaea HOM05D003098 ORTHO05D003634 9.1e-15 84.7 142 47.2
Os02g0244100 Oryza sativa ssp. japonica HOM05D003098 ORTHO05D003634 9.1e-15 84.7 220 33.6
Thhalv10018644m.g Eutrema salsugineum HOM05D003098 ORTHO05D003634 3.4e-14 82.8 221 36.2
CARHR017690 Cardamine hirsuta HOM05D003098 ORTHO05D003634 1.3e-13 80.9 139 43.9
AL1G29360 Arabidopsis lyrata HOM05D003098 ORTHO05D003634 1.7e-13 80.5 99 56.6
BcaC05g25664 Brassica carinata HOM05D003098 ORTHO05D003634 2.2e-13 80.1 140 45.0
BcaB07g34048 Brassica carinata HOM05D003098 ORTHO05D003634 2.9e-13 79.7 119 49.6
Thhalv10008156m.g Eutrema salsugineum HOM05D003098 ORTHO05D003634 3.8e-13 79.3 143 42.7
Zm00001eb204560 Zea mays HOM05D003098 ORTHO05D003634 5.0e-13 79.0 216 37.0
BolC5t30262H Brassica oleracea HOM05D003098 ORTHO05D003634 1.1e-12 77.8 140 44.3
BraA02t07222Z Brassica rapa HOM05D003098 ORTHO05D003634 1.1e-12 77.8 211 34.6
BcaC03g15812 Brassica carinata HOM05D003098 ORTHO05D003634 1.4e-12 77.4 209 36.8
Carub.0002s2532 Capsella rubella HOM05D003098 ORTHO05D003634 1.4e-12 77.4 216 36.6
HPP92_008221 Vanilla planifolia HOM05D003098 ORTHO05D003634 1.4e-12 77.4 208 34.1
C05p15520 Brassica napus HOM05D003098 ORTHO05D003634 1.9e-12 77.0 124 46.8
Sp1g15270 Schrenkiella parvula HOM05D003098 ORTHO05D003634 1.9e-12 77.0 116 48.3
A06p13040 Brassica napus HOM05D003098 ORTHO05D003634 2.5e-12 76.6 140 43.6
BraA06t24463Z Brassica rapa HOM05D003098 ORTHO05D003634 2.5e-12 76.6 140 43.6
BolC2t09574H Brassica oleracea HOM05D003098 ORTHO05D003634 3.2e-12 76.3 209 36.8
A02p22180 Brassica napus HOM05D003098 ORTHO05D003634 4.2e-12 75.9 209 35.4
C02p35590 Brassica napus HOM05D003098 ORTHO05D003634 5.5e-12 75.5 209 36.4
AT1G17145 Arabidopsis thaliana HOM05D003098 ORTHO05D003634 7.2e-12 75.1 146 39.7
AL2G38790 Arabidopsis lyrata HOM05D003098 ORTHO05D003634 9.4e-12 74.7 217 34.6
CDE10G0611 Ceratophyllum demersum HOM05D003098 ORTHO05D003634 9.4e-12 74.7 212 34.4
Solyc07g056690.2 Solanum lycopersicum HOM05D000111 ORTHO05D001334 1.2e-11 74.3 52 82.7
Sopen07g030020 Solanum pennellii HOM05D003098 ORTHO05D003634 1.6e-11 73.9 108 47.2
Zm00001eb238650 Zea mays HOM05D003098 ORTHO05D003634 3.9e-10 69.3 218 34.9
BolC6t38210H Brassica oleracea HOM05D003098 ORTHO05D003634 1.5e-09 67.4 147 38.1
Lsat_1_v5_gn_5_119821 Lactuca sativa HOM05D003098 ORTHO05D003634 5.7e-09 65.5 100 44.0
Aa31LG4G2540 Aethionema arabicum HOM05D003098 ORTHO05D003634 1.3e-08 64.3 216 32.4
HanXRQChr10g0305971 Helianthus annuus HOM05D003098 ORTHO05D003634 1.4e-07 60.8 91 45.1
HanXRQChr10g0305981 Helianthus annuus HOM05D003098 ORTHO05D003634 1.4e-07 60.8 91 45.1
Pp3c3_24920 Physcomitrium patens HOM05D003098 ORTHO05D003634 2.4e-07 60.1 291 29.6
Medtr7g032010 Medicago truncatula HOM05D003098 ORTHO05D003634 1.5e-06 57.4 117 41.9
Medtr7g031960 Medicago truncatula HOM05D003098 ORTHO05D003634 5.9e-06 55.5 134 32.8


User provided reference genes

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