Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 0.0e+00 1288.1 660 100.0
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.1e-308 1062.8 647 86.9
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 7.0e-255 884.0 631 76.4
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 6.5e-253 877.5 638 74.8
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 4.5e-246 854.7 639 71.2
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 1.9e-244 849.4 639 70.6
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 3.9e-237 825.1 666 68.9
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.2e-230 803.5 648 67.4
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 4.7e-227 791.6 637 67.5
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 6.8e-226 787.7 651 66.4
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 6.6e-221 771.2 651 66.4
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 1.8e-218 763.1 617 67.9
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 2.1e-214 749.6 651 63.7
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 6.6e-213 744.6 650 64.0
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 1.1e-212 743.8 648 63.9
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 1.9e-212 743.0 652 64.0
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 2.1e-211 739.6 650 64.2
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 2.1e-211 739.6 653 62.3
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 2.8e-211 739.2 652 63.5
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 8.1e-211 737.6 645 63.1
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 3.1e-210 735.7 653 62.5
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 5.8e-209 731.5 653 62.8
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 8.4e-208 727.6 651 63.1
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 4.2e-207 725.3 652 62.0
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 5.4e-207 724.9 655 62.4
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 5.4e-207 724.9 659 61.9
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.0e-205 720.7 650 62.5
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 3.0e-205 719.2 651 62.7
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 4.3e-204 715.3 640 63.6
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 7.3e-204 714.5 660 60.5
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 6.2e-203 711.4 658 62.3
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 8.1e-203 711.1 651 62.4
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 1.1e-202 710.7 660 60.3
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 2.6e-201 706.1 671 60.5
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 3.4e-201 705.7 660 60.0
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.8e-200 702.2 660 59.7
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 6.4e-200 701.4 675 58.8
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 6.4e-200 701.4 664 59.9
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 1.9e-199 699.9 647 60.3
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.2e-198 697.2 640 61.2
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 1.1e-196 690.6 661 60.2
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 1.3e-195 687.2 646 60.8
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 1.3e-195 687.2 647 60.9
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 3.7e-195 685.6 650 60.5
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 5.3e-194 681.8 651 59.9
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 4.5e-193 678.7 685 57.4
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 1.4e-191 673.7 651 59.6
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 7.1e-191 671.4 649 59.0
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 2.7e-190 669.5 651 60.1
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 7.9e-190 667.9 655 57.6
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 1.3e-189 667.2 647 59.4
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 1.3e-189 667.2 653 58.2
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 3.9e-189 665.6 651 57.3
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 6.7e-189 664.8 592 61.7
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 8.7e-189 664.5 650 58.2
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 1.1e-188 664.1 660 58.2
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 4.3e-188 662.1 621 61.4
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 7.4e-188 661.4 630 60.2
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 6.2e-187 658.3 649 58.2
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 1.8e-186 656.8 651 58.2
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 5.3e-186 655.2 657 57.5
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 9.0e-186 654.4 647 58.9
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 1.2e-185 654.1 645 58.4
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 1.5e-185 653.7 647 58.7
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 2.0e-185 653.3 654 57.8
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.0e-184 651.0 651 56.8
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 1.0e-184 651.0 642 59.0
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 1.4e-183 647.1 648 58.2
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 4.2e-183 645.6 648 57.7
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 1.6e-182 643.7 644 57.8
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 2.7e-182 642.9 645 57.5
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 4.6e-182 642.1 645 57.8
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 6.0e-182 641.7 647 57.7
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 6.7e-181 638.3 640 58.1
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 6.7e-181 638.3 653 57.0
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 1.1e-180 637.5 646 57.9
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.9e-180 636.7 661 55.8
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 4.3e-180 635.6 658 55.5
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 2.1e-179 633.3 656 55.6
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 1.4e-178 630.6 655 55.7
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.8e-178 630.2 574 60.1
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 2.0e-177 626.7 654 55.2
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 1.3e-176 624.0 656 55.2
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 1.3e-176 624.0 656 55.2
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 2.9e-176 622.9 675 55.0
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 1.1e-175 620.9 595 59.7
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 4.2e-175 619.0 655 56.3
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 2.7e-174 616.3 655 54.8
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 3.7e-171 605.9 617 57.2
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 1.1e-170 604.4 659 54.9
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 3.8e-168 595.9 675 54.2
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 9.4e-167 591.3 662 53.3
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 1.0e-165 587.8 521 62.2
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 3.3e-164 582.8 650 52.5
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 1.7e-163 580.5 650 52.3
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 8.2e-163 578.2 644 53.4
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 3.8e-160 569.3 650 53.5
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 9.4e-159 564.7 661 52.3
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 1.0e-157 561.2 574 56.4
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 1.7e-155 553.9 613 54.3
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 4.2e-151 539.3 655 50.1
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 7.2e-151 538.5 652 50.2
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 8.0e-150 535.0 451 65.0
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 2.3e-149 533.5 637 53.1
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 8.8e-149 531.6 343 79.3
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.2e-143 513.1 700 48.6
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.3e-136 490.3 357 71.7
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 1.2e-134 484.6 338 74.9
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 2.2e-131 473.8 568 51.4
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 3.3e-127 459.9 555 49.7
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 4.0e-125 453.0 492 53.3
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 5.2e-125 452.6 639 46.3
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 4.1e-122 443.0 336 68.8
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 4.3e-119 433.0 549 48.6
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 3.1e-117 426.8 573 46.1
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 1.3e-115 421.4 432 57.4
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 3.8e-99 366.7 421 52.3
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 2.4e-98 364.0 263 71.9
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 2.2e-91 340.9 689 36.7
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 2.9e-83 313.9 181 88.4
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 9.3e-82 308.9 280 63.9
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.3e-80 305.1 345 53.3
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.9e-79 301.2 282 60.6
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 5.6e-79 299.7 379 48.8
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 7.1e-74 282.7 409 46.9
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 6.0e-73 279.6 243 64.2
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 1.9e-71 274.6 695 34.0
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 5.6e-71 273.1 708 33.1
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 6.9e-69 266.2 290 54.5
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 9.3e-66 255.8 244 54.1
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 6.3e-62 243.0 272 51.5
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 5.5e-58 229.9 285 49.8
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 2.7e-57 227.6 267 52.8
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 6.1e-57 226.5 280 48.6
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 1.8e-53 214.9 270 48.9
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 2.6e-52 211.1 278 48.9
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 2.5e-50 204.5 268 45.5
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.1e-47 195.7 254 48.8
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 2.6e-47 194.5 784 28.4
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.1e-45 189.1 435 33.8
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 2.6e-44 184.5 125 76.8
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 7.7e-44 183.0 264 44.3
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.6e-41 175.3 148 65.5
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 7.4e-39 166.4 257 42.4
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 4.1e-37 160.6 128 67.2
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 9.1e-37 159.5 101 81.2
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 1.3e-35 155.6 135 62.2
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.6e-33 148.7 147 57.1
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 4.7e-33 147.1 170 51.2
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 8.0e-33 146.4 277 36.1
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 8.0e-33 146.4 88 83.0
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 4.0e-32 144.1 343 31.8
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 6.7e-32 143.3 143 57.3
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 8.8e-32 142.9 208 45.7
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.7e-30 138.7 162 48.8
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 3.5e-28 131.0 443 28.2
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 2.7e-25 121.3 163 42.9
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 1.1e-21 109.4 127 52.8
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.1e-21 109.4 56 91.1
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 5.4e-21 107.1 55 90.9
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 1.6e-20 105.5 62 82.3
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 2.0e-20 105.1 97 56.7
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 2.3e-19 101.7 131 42.0
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 2.8e-17 94.7 339 29.2
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 2.3e-16 91.7 122 48.4
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 1.2e-15 89.4 263 28.9
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 4.4e-15 87.4 77 59.7
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.9e-11 74.7 88 51.1
Sopen05g010660 Solanum pennellii HOM05D003724 ORTHO05D004367 2.8e-09 68.2 57 66.7
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 4.7e-09 67.4 50 64.0
Nitab4.5_0000108g0210 Nicotiana tabacum HOM05D008334 ORTHO05D010366 6.1e-09 67.0 39 76.9
PSO561G0043 Papaver somniferum HOM05D003724 ORTHO05D004367 6.1e-09 67.0 83 54.2
SHI18623 Sapria himalayana HOM05D003724 ORTHO05D004367 9.8e-07 59.7 45 57.8
Ah.02g111740 Amaranthus hybridus HOM05D003315 ORTHO05D003407 1.3e-06 59.3 66 48.5
Ah.16g100850 Amaranthus hybridus HOM05D003315 ORTHO05D003407 1.3e-06 59.3 66 48.5
MBI01_g03586_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 2.2e-06 58.5 72 44.4
MBI13_g41189_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 2.2e-06 58.5 72 44.4
Zm00001eb247260 Zea mays HOM05D000069 ORTHO05D004367 2.9e-06 58.2 114 43.9
MBI07_g38547_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.7e-06 57.8 73 43.8
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 4.9e-06 57.4 107 42.1
Rhsim02G0239300 Rhododendron simsii HOM05D003724 ORTHO05D004367 4.9e-06 57.4 44 61.4
MBI16_g19191_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 8.3e-06 56.6 72 43.1


User provided reference genes

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