Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 2.7e-211 738.4 378 100.0
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 1.8e-183 646.0 444 78.6
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 3.7e-168 595.1 430 74.9
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 1.2e-166 590.1 430 74.7
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 1.2e-166 590.1 430 74.9
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 1.3e-160 570.1 430 71.4
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 4.9e-160 568.2 424 72.6
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 1.4e-106 390.6 375 58.4
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 2.4e-106 389.8 403 54.8
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 3.4e-105 386.0 403 54.6
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 3.4e-105 386.0 416 52.9
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 1.1e-103 380.9 406 53.2
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 4.6e-102 375.6 422 51.2
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 6.0e-102 375.2 422 52.4
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 1.0e-101 374.4 418 52.9
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 1.3e-101 374.0 420 52.9
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 1.9e-100 370.2 433 51.7
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 2.8e-99 366.3 421 51.5
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 1.4e-98 364.0 408 51.5
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 1.4e-98 364.0 425 51.8
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 3.1e-98 362.8 415 51.6
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 7.6e-97 358.2 432 49.1
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.0e-96 357.8 399 51.1
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 2.9e-96 356.3 384 52.9
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 3.8e-96 355.9 403 53.3
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 8.5e-96 354.8 384 52.3
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 4.2e-95 352.4 415 49.9
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 7.2e-95 351.7 384 51.8
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 1.6e-94 350.5 411 50.6
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.6e-94 350.5 399 50.9
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 2.1e-94 350.1 394 51.5
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 7.9e-94 348.2 395 52.7
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 1.1e-92 344.4 400 49.2
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 1.1e-92 344.4 410 51.2
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 1.5e-92 344.0 400 51.0
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 2.5e-92 343.2 400 49.5
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 5.7e-92 342.0 445 47.0
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 9.7e-92 341.3 408 49.3
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 4.8e-91 339.0 417 50.4
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 6.3e-91 338.6 427 48.2
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 1.1e-90 337.8 397 50.1
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.8e-90 337.0 413 50.6
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 4.1e-90 335.9 402 51.0
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 5.3e-90 335.5 418 48.6
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 5.3e-90 335.5 387 52.5
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 6.9e-90 335.1 405 49.6
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 9.1e-90 334.7 402 49.0
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.0e-88 331.3 402 48.8
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 1.3e-88 330.9 413 47.5
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 1.7e-88 330.5 415 47.7
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 3.8e-88 329.3 430 46.7
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 5.0e-88 328.9 427 48.5
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 1.9e-87 327.0 411 47.9
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 1.9e-87 327.0 403 49.9
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 2.5e-87 326.6 420 47.1
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 3.2e-87 326.2 409 48.9
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 4.2e-87 325.9 397 51.1
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 2.7e-86 323.2 357 52.4
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 3.6e-86 322.8 415 49.2
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 7.9e-86 321.6 386 50.5
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.0e-85 321.2 442 44.8
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 1.0e-85 321.2 390 49.0
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 1.4e-85 320.9 408 47.8
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 1.4e-85 320.9 424 45.8
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 1.8e-85 320.5 435 44.1
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 3.0e-85 319.7 442 44.6
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 8.8e-85 318.2 407 47.7
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 2.2e-83 313.5 408 47.1
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 2.8e-83 313.2 411 47.4
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 1.8e-82 310.5 439 44.9
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 1.8e-82 310.5 435 43.2
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 3.1e-82 309.7 464 42.5
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 6.9e-82 308.5 412 46.6
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 1.2e-81 307.8 412 46.6
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 2.6e-81 306.6 394 45.9
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 4.5e-81 305.8 354 52.0
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 8.5e-80 301.6 338 50.9
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 5.2e-77 292.4 386 46.9
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 8.8e-77 291.6 341 51.9
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 4.4e-76 289.3 352 48.6
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 4.8e-75 285.8 394 45.2
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 2.4e-74 283.5 355 47.6
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 3.8e-72 276.2 341 46.9
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 5.5e-71 272.3 428 42.3
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 3.6e-70 269.6 351 48.4
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 6.7e-69 265.4 398 41.2
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.5e-68 264.2 311 49.8
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 2.2e-67 260.4 334 47.9
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 3.7e-67 259.6 384 45.1
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 6.5e-64 248.8 365 43.8
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 1.1e-63 248.1 382 41.9
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 1.2e-62 244.6 320 46.9
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 5.7e-60 235.7 316 45.6
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 2.8e-59 233.4 295 47.1
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 2.8e-59 233.4 186 62.4
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 4.5e-57 226.1 398 41.5
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 2.9e-56 223.4 184 61.4
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 4.2e-55 219.5 186 58.6
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 3.6e-54 216.5 186 58.6
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 1.0e-53 214.9 374 39.8
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 1.7e-51 207.6 300 42.7
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.7e-48 197.6 257 45.9
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 6.6e-48 195.7 157 63.1
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 8.6e-48 195.3 529 31.2
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 6.1e-46 189.1 342 38.0
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.0e-45 186.8 154 61.7
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 1.2e-44 184.9 417 36.5
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 5.7e-44 182.6 188 53.2
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 8.3e-43 178.7 512 29.7
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 7.8e-41 172.2 416 32.5
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 4.3e-39 166.4 188 47.9
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 1.6e-38 164.5 229 42.8
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 4.7e-38 162.9 272 40.8
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 4.7e-38 162.9 367 35.7
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 8.3e-35 152.1 128 64.1
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 8.3e-35 152.1 361 30.7
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 7.8e-33 145.6 127 58.3
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 3.9e-32 143.3 133 55.6
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 5.0e-32 142.9 108 62.0
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 5.6e-31 139.4 98 72.4
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 1.1e-29 135.2 97 66.0
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 1.2e-28 131.7 110 60.0
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 1.3e-27 128.3 125 53.6
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 7.1e-26 122.5 97 62.9
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.8e-22 110.5 155 46.5
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 1.4e-21 108.2 139 43.2
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 1.5e-20 104.8 102 54.9
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 4.9e-19 99.8 300 33.0
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 1.1e-18 98.6 85 55.3
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 3.0e-16 90.5 104 48.1
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 3.0e-16 90.5 46 87.0
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 3.9e-16 90.1 102 50.0
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 8.4e-11 72.4 59 55.9
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 1.1e-10 72.0 102 39.2
MD07G1140100 Malus domestica HOM05D005745 ORTHO05D006857 4.8e-06 56.6 64 50.0


User provided reference genes

Program Settings