Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 6.8e-123 444.1 243 100.0
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 6.8e-115 417.5 243 93.8
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 5.6e-109 397.9 243 89.7
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 2.2e-105 386.0 243 87.2
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 8.4e-105 384.0 242 87.6
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.2e-103 380.2 243 81.9
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.6e-103 379.8 243 85.2
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 1.0e-102 377.1 243 85.6
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 3.0e-102 375.6 242 85.1
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 3.0e-102 375.6 243 85.6
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 4.3e-101 371.7 243 85.2
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 4.3e-101 371.7 243 84.4
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 7.8e-95 350.9 240 77.5
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 2.4e-91 339.3 244 75.0
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 2.0e-90 336.3 243 77.8
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 4.5e-90 335.1 241 73.4
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 1.3e-89 333.6 243 77.0
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 2.9e-89 332.4 241 77.6
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 1.1e-88 330.5 205 82.0
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 1.4e-88 330.1 243 74.5
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 1.9e-88 329.7 243 73.7
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.4e-88 329.3 243 76.1
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 2.4e-88 329.3 238 73.1
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 4.2e-88 328.6 241 74.7
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 9.3e-88 327.4 206 80.6
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 9.3e-88 327.4 243 75.3
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 1.2e-87 327.0 241 75.9
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 1.2e-87 327.0 241 76.3
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 1.6e-87 326.6 243 74.1
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 1.6e-87 326.6 240 71.2
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 2.1e-87 326.2 243 70.0
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 2.1e-87 326.2 206 80.1
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 4.6e-87 325.1 241 70.5
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 4.6e-87 325.1 241 76.3
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 6.0e-87 324.7 243 70.0
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 6.0e-87 324.7 209 78.0
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 7.9e-87 324.3 243 74.5
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 7.9e-87 324.3 246 68.3
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 7.9e-87 324.3 241 71.4
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 1.8e-86 323.2 243 69.5
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 1.8e-86 323.2 241 76.8
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 3.0e-86 322.4 243 74.5
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 3.0e-86 322.4 241 68.9
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 8.7e-86 320.9 228 79.8
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 8.7e-86 320.9 240 69.2
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 1.5e-85 320.1 234 72.2
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.5e-85 319.3 241 69.7
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 3.3e-85 318.9 241 73.9
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 4.3e-85 318.5 241 69.7
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 4.3e-85 318.5 241 69.3
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 9.6e-85 317.4 252 67.5
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 1.3e-84 317.0 240 73.3
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.6e-84 316.6 241 69.3
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 1.6e-84 316.6 237 74.3
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 2.1e-84 316.2 243 73.7
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 2.8e-84 315.8 239 72.8
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 2.8e-84 315.8 240 73.3
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 2.8e-84 315.8 198 82.3
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 4.8e-84 315.1 203 78.3
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 6.2e-84 314.7 240 73.3
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 8.1e-84 314.3 241 68.9
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 1.4e-83 313.5 241 69.7
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 1.8e-83 313.2 240 74.2
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 1.8e-83 313.2 239 72.8
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 4.0e-83 312.0 206 77.2
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 9.0e-83 310.8 240 72.5
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 1.5e-82 310.1 241 73.0
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.0e-82 309.7 205 78.0
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 2.6e-82 309.3 243 66.3
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 2.6e-82 309.3 239 72.4
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 3.4e-82 308.9 205 77.1
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 4.5e-82 308.5 200 77.5
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 4.5e-82 308.5 202 78.2
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 5.8e-82 308.1 227 78.0
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.3e-81 307.0 241 68.0
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.7e-81 306.6 203 76.8
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.7e-81 306.6 206 76.2
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 2.9e-81 305.8 241 71.0
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 2.9e-81 305.8 241 71.0
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 6.4e-81 304.7 241 70.1
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 6.4e-81 304.7 243 69.5
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.4e-80 303.5 243 68.7
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 1.9e-80 303.1 199 77.9
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 4.2e-80 302.0 241 68.0
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 4.2e-80 302.0 241 68.5
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.2e-79 300.4 204 75.0
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.6e-79 300.1 203 75.4
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 2.1e-79 299.7 234 71.4
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 2.1e-79 299.7 200 76.0
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 6.0e-79 298.1 202 75.7
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 1.3e-78 297.0 241 73.0
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.3e-78 297.0 194 78.9
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.8e-78 296.6 245 66.1
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.8e-78 296.6 244 66.8
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 5.1e-78 295.0 196 78.6
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 5.1e-78 295.0 245 65.7
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 6.7e-78 294.7 206 75.7
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.5e-77 293.5 243 68.7
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 1.5e-77 293.5 205 73.2
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.9e-77 293.1 244 66.4
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.5e-77 292.7 245 65.3
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 2.5e-77 292.7 245 64.9
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 5.6e-77 291.6 243 69.5
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 1.3e-76 290.4 208 72.1
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 1.3e-76 290.4 246 67.9
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 1.3e-76 290.4 245 64.9
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 1.6e-76 290.0 226 70.8
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 2.1e-76 289.7 227 69.6
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 2.8e-76 289.3 245 64.9
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 4.8e-76 288.5 244 66.0
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 8.2e-76 287.7 243 65.8
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 8.2e-76 287.7 245 64.5
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 2.4e-75 286.2 243 65.0
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 5.3e-75 285.0 215 69.3
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 5.3e-75 285.0 215 69.3
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 1.2e-74 283.9 211 68.2
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 2.6e-74 282.7 215 68.8
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 2.6e-74 282.7 215 68.8
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 2.1e-71 273.1 241 65.6
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 4.6e-71 271.9 183 76.5
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 1.3e-70 270.4 243 59.7
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 9.7e-69 264.2 227 62.6
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 4.1e-67 258.8 196 69.4
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.1e-64 250.8 177 70.6
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 4.3e-61 238.8 197 63.5
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 8.5e-57 224.6 157 73.2
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 1.2e-55 220.7 213 58.7
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 6.1e-55 218.4 190 63.7
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 1.4e-54 217.2 245 53.5
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 6.3e-52 208.4 171 69.0
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 1.1e-43 181.0 133 68.4
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 5.9e-42 175.3 213 50.7
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 4.2e-40 169.1 110 70.0
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 2.3e-38 163.3 176 51.1
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 4.1e-35 152.5 173 49.1
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.9e-32 143.7 91 94.5
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 8.0e-31 138.3 102 62.7
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 1.5e-29 134.0 188 42.0
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 2.8e-28 129.8 130 58.5
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 4.2e-24 115.9 86 64.0
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 1.7e-20 104.0 91 64.8
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 2.5e-16 90.1 189 30.7
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 1.2e-13 81.3 61 65.6
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 3.7e-12 76.3 188 28.7
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 9.2e-11 71.6 80 55.0
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 3.0e-09 66.6 83 48.2
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 8.0e-07 58.5 63 55.6
FAN23G2223 Fragaria x ananassa HOM05D001255 ORTHO05D006136 4.0e-06 56.2 55 58.2


User provided reference genes

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