Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.9e-148 529.3 282 100.0
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 5.6e-145 517.7 282 96.8
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 5.8e-142 507.7 282 94.7
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 1.1e-140 503.4 282 93.6
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 3.2e-140 501.9 282 93.6
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 4.2e-140 501.5 282 93.3
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 3.5e-139 498.4 282 92.6
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 4.0e-127 458.4 282 84.4
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 5.8e-126 454.5 282 83.0
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 1.1e-124 450.3 282 81.2
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 9.3e-124 447.2 282 80.5
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 9.3e-124 447.2 282 80.5
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 1.2e-123 446.8 282 82.3
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 3.5e-123 445.3 282 79.4
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 1.0e-122 443.7 282 79.4
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 1.0e-122 443.7 282 80.9
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 3.0e-122 442.2 282 81.2
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 3.9e-122 441.8 282 79.8
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 5.1e-122 441.4 282 79.8
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 5.1e-122 441.4 282 78.7
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 6.7e-122 441.0 282 80.9
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 1.1e-121 440.3 281 79.4
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 1.5e-121 439.9 282 79.8
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 2.5e-121 439.1 282 79.1
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.5e-121 439.1 282 79.4
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 5.7e-121 438.0 282 79.1
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 1.3e-120 436.8 282 78.7
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 1.6e-120 436.4 282 78.7
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 6.3e-120 434.5 282 79.8
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 1.1e-119 433.7 282 79.4
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 1.4e-119 433.3 282 79.4
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 2.4e-119 432.6 282 77.3
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 9.0e-119 430.6 282 79.1
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 9.0e-119 430.6 281 77.9
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 1.2e-118 430.3 282 78.0
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 1.2e-118 430.3 282 78.4
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 1.5e-118 429.9 282 78.7
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 2.0e-118 429.5 282 77.0
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 2.6e-118 429.1 282 77.7
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 3.4e-118 428.7 282 76.6
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 4.5e-118 428.3 282 78.0
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 5.9e-118 427.9 282 78.0
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 5.9e-118 427.9 282 78.0
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 5.9e-118 427.9 282 78.0
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 7.7e-118 427.6 282 77.3
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.0e-117 427.2 282 79.1
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 1.3e-117 426.8 280 78.6
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 2.9e-117 425.6 282 77.3
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 2.9e-117 425.6 282 78.4
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 3.8e-117 425.2 282 79.1
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 5.0e-117 424.9 280 77.1
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 8.5e-117 424.1 282 75.9
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.4e-116 423.3 286 76.2
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.4e-116 423.3 286 76.2
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 1.4e-116 423.3 282 78.4
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 3.2e-116 422.2 282 75.5
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 5.5e-116 421.4 282 75.9
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 5.5e-116 421.4 282 78.0
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 7.2e-116 421.0 282 76.2
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 9.4e-116 420.6 282 76.2
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.2e-115 420.2 282 77.7
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 2.1e-115 419.5 282 77.3
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 2.1e-115 419.5 282 75.9
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 2.7e-115 419.1 282 75.5
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 3.6e-115 418.7 282 74.5
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 4.6e-115 418.3 282 78.0
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 1.0e-114 417.2 282 75.9
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.0e-114 417.2 282 75.2
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 1.0e-114 417.2 282 76.2
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 1.0e-114 417.2 280 76.1
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.4e-114 416.8 287 74.9
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 1.4e-114 416.8 282 75.2
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 1.1e-113 413.7 282 75.9
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 2.5e-113 412.5 282 74.8
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 4.3e-113 411.8 282 76.6
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 6.3e-112 407.9 283 73.5
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 6.3e-112 407.9 282 73.4
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 8.2e-112 407.5 280 75.7
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 1.1e-111 407.1 282 75.9
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 1.4e-111 406.8 282 73.4
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 1.4e-111 406.8 294 72.8
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 3.1e-111 405.6 280 75.4
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 4.1e-111 405.2 282 72.7
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 4.1e-111 405.2 282 75.5
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 4.1e-111 405.2 282 75.9
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.2e-110 403.7 282 72.7
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 1.2e-110 403.7 282 72.7
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.5e-110 403.3 256 79.7
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 1.5e-110 403.3 280 75.0
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.5e-110 403.3 282 73.0
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 2.6e-110 402.5 282 72.7
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 1.3e-109 400.2 282 72.0
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.7e-109 399.8 282 72.3
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 2.2e-109 399.4 282 71.6
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 2.9e-109 399.1 282 72.7
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 5.0e-109 398.3 282 72.0
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 8.5e-109 397.5 282 72.0
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.4e-108 396.7 282 72.7
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.4e-108 396.7 282 72.7
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 3.2e-108 395.6 282 71.6
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 3.2e-108 395.6 282 71.6
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 3.2e-108 395.6 282 71.6
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 4.7e-107 391.7 282 70.6
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 2.8e-96 355.9 282 68.4
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 3.1e-95 352.4 226 80.5
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 4.5e-94 348.6 255 72.2
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 3.6e-91 339.0 235 72.8
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 6.1e-91 338.2 256 71.9
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.4e-90 337.0 282 64.5
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 5.2e-90 335.1 282 64.2
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 3.7e-88 328.9 288 60.8
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 2.9e-85 319.3 288 59.7
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 1.5e-84 317.0 290 59.7
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 4.4e-81 305.4 243 67.5
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 1.4e-79 300.4 280 58.9
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 7.0e-79 298.1 257 63.0
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 2.7e-78 296.2 282 57.8
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.7e-78 296.2 280 56.4
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.8e-71 273.5 284 56.7
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.8e-67 259.6 283 54.1
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 8.6e-61 238.0 275 49.8
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 1.9e-60 236.9 290 48.3
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.1e-59 233.4 283 51.9
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 2.3e-58 229.9 249 53.4
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.4e-55 220.7 280 50.4
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 2.4e-55 219.9 268 50.7
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 2.1e-54 216.9 150 73.3
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 4.6e-54 215.7 294 44.2
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 2.1e-46 190.3 222 50.9
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.0e-42 176.0 164 54.9
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 1.5e-41 174.1 222 48.6
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 9.0e-26 121.7 73 89.0
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 8.7e-21 105.1 87 69.0
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.2e-16 90.5 102 49.0
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 9.0e-10 68.6 59 54.2
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 4.6e-06 56.2 51 51.0


User provided reference genes

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