Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 6.0e-258 893.6 448 100.0
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 3.3e-232 808.1 434 92.6
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 1.4e-182 643.3 526 66.0
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 7.2e-179 630.9 526 62.9
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 1.2e-178 630.2 526 65.0
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 3.0e-156 555.8 528 57.4
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 7.1e-142 508.1 525 53.0
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 3.6e-138 495.7 525 52.6
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 1.7e-132 476.9 525 49.5
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 8.7e-132 474.6 530 50.4
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 3.3e-131 472.6 527 48.8
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 1.3e-130 470.7 534 49.4
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 6.2e-130 468.4 326 76.1
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 1.4e-129 467.2 526 49.2
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.4e-129 467.2 530 49.6
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 1.8e-124 450.3 528 47.5
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.3e-123 446.0 527 48.2
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 2.1e-122 443.4 527 48.2
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 2.8e-122 443.0 522 47.3
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 7.6e-120 434.9 509 47.3
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 7.6e-120 434.9 518 45.2
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.3e-116 424.1 525 43.6
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.3e-114 417.5 522 46.9
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 3.7e-114 416.0 529 44.0
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 3.7e-114 416.0 522 44.4
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 4.8e-114 415.6 528 44.3
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 1.8e-113 413.7 484 47.9
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 3.1e-113 412.9 530 42.6
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 5.3e-113 412.1 534 44.2
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 1.2e-112 411.0 528 43.6
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 7.6e-112 408.3 530 44.2
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 1.0e-111 407.9 522 43.1
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 1.1e-110 404.4 526 43.0
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 1.9e-110 403.7 529 43.1
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 2.1e-109 400.2 538 43.3
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 3.5e-109 399.4 504 43.3
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 4.6e-109 399.1 533 42.6
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 7.9e-109 398.3 531 44.4
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 1.8e-108 397.1 529 41.6
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 2.3e-108 396.7 538 43.1
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 7.4e-107 391.7 516 42.4
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 9.7e-107 391.3 537 41.7
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 1.3e-106 391.0 524 43.9
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 1.6e-106 390.6 534 42.7
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 2.2e-106 390.2 532 42.3
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 2.4e-105 386.7 530 42.8
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 2.4e-105 386.7 537 41.2
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 6.9e-105 385.2 536 41.8
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 9.0e-105 384.8 531 41.8
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 1.5e-104 384.0 529 41.8
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 2.6e-104 383.3 527 41.6
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 3.4e-104 382.9 525 43.4
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 5.9e-104 382.1 529 41.8
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 1.7e-103 380.6 533 41.1
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 3.8e-103 379.4 524 43.9
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 5.0e-103 379.0 514 43.0
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 1.1e-102 377.9 513 42.7
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.9e-102 377.1 523 43.8
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 1.2e-101 374.4 403 52.4
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 2.1e-101 373.6 518 41.1
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.7e-101 373.2 518 41.5
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 4.6e-101 372.5 528 40.0
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 4.6e-101 372.5 518 41.5
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.0e-100 371.3 518 41.5
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.4e-100 370.9 515 43.5
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.7e-100 368.6 515 41.2
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 1.5e-99 367.5 523 42.4
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.5e-99 367.5 515 41.0
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 2.0e-99 367.1 527 40.8
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 4.8e-98 362.5 529 39.9
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 1.1e-97 361.3 407 49.9
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 1.5e-96 357.5 522 39.5
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 1.3e-95 354.4 531 39.5
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 3.8e-95 352.8 424 46.0
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 6.5e-95 352.1 525 40.2
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 1.4e-94 350.9 525 40.2
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 3.2e-94 349.7 532 39.7
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 5.5e-94 349.0 574 39.4
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 9.4e-94 348.2 382 48.4
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 2.0e-91 340.5 539 38.8
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 7.4e-91 338.6 538 38.7
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.3e-90 337.8 532 38.0
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.7e-90 337.4 537 38.5
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 1.4e-89 334.3 541 37.7
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 3.5e-88 329.7 539 37.1
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 7.7e-88 328.6 526 37.5
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 5.0e-87 325.9 522 38.3
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 6.5e-87 325.5 527 37.8
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 2.7e-85 320.1 533 38.1
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 3.9e-84 316.2 534 37.5
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 3.3e-83 313.2 526 35.4
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 1.2e-80 304.7 509 36.0
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 5.9e-80 302.4 509 35.8
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 5.9e-80 302.4 509 35.6
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 5.9e-80 302.4 509 35.8
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 5.9e-80 302.4 509 35.8
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 1.6e-77 294.3 510 36.1
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 4.7e-77 292.7 531 35.0
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 4.0e-76 289.7 500 37.6
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 3.7e-74 283.1 521 35.1
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 5.3e-73 279.3 405 39.8
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 1.0e-71 275.0 525 34.5
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 4.2e-70 269.6 479 36.3
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 7.2e-70 268.9 470 37.2
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 1.7e-66 257.7 393 42.7
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 1.1e-65 255.0 316 45.3
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 5.4e-65 252.7 416 39.2
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 1.7e-63 247.7 460 35.0
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 2.6e-59 233.8 464 33.0
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 1.3e-55 221.5 443 33.6
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 2.0e-51 207.6 303 38.0
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 7.5e-51 205.7 279 41.2
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 3.4e-43 180.3 394 32.7
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 2.9e-42 177.2 279 41.2
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.1e-41 175.3 214 45.8
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 1.4e-41 174.9 556 27.9
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.8e-36 157.9 225 39.1
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 9.2e-33 145.6 290 33.8
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 3.9e-31 140.2 163 41.1
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 2.4e-28 131.0 406 28.3
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 1.3e-26 125.2 129 52.7
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 3.8e-26 123.6 135 54.1
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 1.1e-20 105.5 276 29.3
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 6.9e-20 102.8 100 51.0
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 4.4e-19 100.1 203 33.0
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 7.6e-19 99.4 162 33.3
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 1.9e-14 84.7 205 30.7
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 7.3e-14 82.8 212 32.5
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 9.6e-14 82.4 69 60.9
Nitab4.5_0001189g0060 Nicotiana tabacum HOM05D002338 ORTHO05D006102 2.1e-13 81.3 44 77.3
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 3.6e-13 80.5 195 25.1
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 5.3e-12 76.6 134 35.8
FAN14G0023 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.2e-09 67.4 72 54.2
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 1.2e-08 65.5 66 40.9
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 3.5e-08 63.9 56 42.9
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.7e-07 59.3 178 28.1
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.1e-06 58.9 178 28.1
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 2.5e-06 57.8 56 50.0


User provided reference genes

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