Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001942g0070 Nicotiana tabacum HOM05D006943 ORTHO05D008565 8.1e-191 670.2 336 100.0
Nitab4.5_0005058g0010 Nicotiana tabacum HOM05D006943 ORTHO05D008565 9.0e-158 560.5 315 88.6
Sopen08g022790 Solanum pennellii HOM05D006943 ORTHO05D008565 1.2e-146 523.5 319 81.5
Solyc08g069160.3 Solanum lycopersicum HOM05D006943 ORTHO05D008565 3.6e-146 521.9 319 81.5
PGSC0003DMG400029553 Solanum tuberosum HOM05D006943 ORTHO05D008565 2.3e-145 519.2 319 81.8
CAN.G480.10 Capsicum annuum HOM05D006943 ORTHO05D008565 6.5e-132 474.6 319 74.9
Peaxi162Scf00213g00939 Petunia axillaris HOM05D006943 ORTHO05D008565 7.2e-131 471.1 320 74.4
Cc10_g14290 Coffea canephora HOM05D006943 ORTHO05D008565 5.6e-59 232.3 313 43.1
Oeu008780.1 Olea europaea HOM05D006943 ORTHO05D008565 4.5e-48 196.1 333 38.7
Dinv37491 Davidia involucrata HOM05D006943 ORTHO05D008565 2.2e-47 193.7 323 37.2
Migut.E01408 Erythranthe guttata HOM05D006943 ORTHO05D008565 4.2e-46 189.5 338 39.6
Migut.E01420 Erythranthe guttata HOM05D006943 ORTHO05D008565 4.2e-46 189.5 338 39.6
Actinidia25739 Actinidia chinensis HOM05D006943 ORTHO05D008565 9.3e-46 188.3 324 37.7
SalBow8G0710 Salvia bowleyana HOM05D006943 ORTHO05D008565 8.7e-44 181.8 335 38.8
GSVIVG01035569001 Vitis vinifera HOM05D006943 ORTHO05D008565 2.5e-38 163.7 316 34.2
TWI63G1698 Tripterygium wilfordii HOM05D006943 ORTHO05D008565 4.2e-38 162.9 309 34.3
AL7G20800 Arabidopsis lyrata HOM05D006943 ORTHO05D008565 9.3e-38 161.8 316 35.1
Duzib168G0749 Durio zibethinus HOM05D006943 ORTHO05D008565 6.1e-37 159.1 316 34.5
THA.LOC104803585 Tarenaya hassleriana HOM05D006943 ORTHO05D008565 1.8e-36 157.5 311 35.0
AT4G31270 Arabidopsis thaliana HOM05D006943 ORTHO05D008565 2.3e-36 157.1 317 33.1
QL12p025818 Quercus lobata HOM05D006943 ORTHO05D008565 3.0e-36 156.8 328 32.3
Aa31LG2G19090 Aethionema arabicum HOM05D006943 ORTHO05D008565 3.9e-36 156.4 319 33.5
Haze_21789 Corylus avellana HOM05D006943 ORTHO05D008565 3.9e-36 156.4 326 34.7
Lsat_1_v5_gn_3_68681 Lactuca sativa HOM05D006943 ORTHO05D008565 5.1e-36 156.0 312 35.9
Cpa.g.sc148.5 Carica papaya HOM05D006943 ORTHO05D008565 1.1e-35 154.8 326 35.3
Thhalv10025787m.g Eutrema salsugineum HOM05D006943 ORTHO05D008565 1.9e-35 154.1 335 35.2
CANSAT35G2034 Cannabis sativa HOM05D006943 ORTHO05D008565 7.4e-35 152.1 331 32.6
HanXRQChr03g0081291 Helianthus annuus HOM05D006943 ORTHO05D008565 7.4e-35 152.1 306 35.6
CSS0017346 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 6.3e-34 149.1 143 50.3
CSS0048200 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 6.3e-34 149.1 143 50.3
CSS0049214 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 1.4e-33 147.9 143 50.3
CsaV3_3G047250 Cucumis sativus L. HOM05D006943 ORTHO05D008565 2.4e-33 147.1 315 33.3
MELO3C003604.2 Cucumis melo HOM05D006943 ORTHO05D008565 5.3e-33 146.0 319 33.9
Lsat_1_v5_gn_5_56401 Lactuca sativa HOM05D006943 ORTHO05D008565 6.9e-33 145.6 313 34.5
ClCG05G026350 Citrullus lanatus HOM05D006943 ORTHO05D008565 9.0e-33 145.2 310 31.9
Cfa013306 Carpinus fangiana HOM05D006943 ORTHO05D008565 1.2e-32 144.8 325 31.4
Carub.0007s0929 Capsella rubella HOM05D006943 ORTHO05D008565 1.5e-32 144.4 318 33.3
TAR636G0756 Trochodendron aralioides HOM05D006943 ORTHO05D008565 1.5e-32 144.4 316 32.9
BraA08t33836Z Brassica rapa HOM05D006943 ORTHO05D008565 7.7e-32 142.1 324 30.9
ECA246G0365 Erigeron canadensis HOM05D006943 ORTHO05D008565 1.0e-31 141.7 317 32.2
A08p18750 Brassica napus HOM05D006943 ORTHO05D008565 1.3e-31 141.4 328 31.1
CARHR239150 Cardamine hirsuta HOM05D006943 ORTHO05D008565 1.3e-31 141.4 322 32.6
Lalb_Chr22g0361191 Lupinus albus HOM05D006943 ORTHO05D008565 3.8e-31 139.8 358 30.2
Ciclev10009072m.g Citrus clementina HOM05D006943 ORTHO05D008565 4.2e-30 136.3 324 32.1
COL.COLO4_18631 Corchorus olitorius HOM05D006943 ORTHO05D008565 4.2e-30 136.3 324 31.8
Sed0013911 Sechium edule HOM05D006943 ORTHO05D008565 4.2e-30 136.3 323 33.1
BcaB03g12686 Brassica carinata HOM05D006943 ORTHO05D008565 5.5e-30 136.0 172 42.4
BolC3t21121H Brassica oleracea HOM05D006943 ORTHO05D008565 5.5e-30 136.0 326 31.0
BcaC01g01105 Brassica carinata HOM05D006943 ORTHO05D008565 9.4e-30 135.2 323 30.3
C03p88130 Brassica napus HOM05D006943 ORTHO05D008565 9.4e-30 135.2 323 30.3
Dinv38807 Davidia involucrata HOM05D006943 ORTHO05D008565 1.2e-29 134.8 286 34.6
Eucgr.C02135 Eucalyptus grandis HOM05D006943 ORTHO05D008565 2.1e-29 134.0 405 30.1
Nn5g27072 Nelumbo nucifera HOM05D006943 ORTHO05D008565 2.1e-29 134.0 311 29.3
Ca_01518_v3 Cicer arietinum L. HOM05D006943 ORTHO05D008565 2.7e-29 133.7 329 32.2
Sp7g29130 Schrenkiella parvula HOM05D006943 ORTHO05D008565 7.9e-29 132.1 218 39.0
AUR62038724 Chenopodium quinoa HOM05D006943 ORTHO05D008565 1.0e-28 131.7 323 30.7
AUR62043827 Chenopodium quinoa HOM05D006943 ORTHO05D008565 1.0e-28 131.7 323 30.7
DCAR_004562 Daucus carota HOM05D006943 ORTHO05D008565 1.4e-28 131.3 307 29.3
Sc06g0001270 Simmondsia chinensis HOM05D006943 ORTHO05D008565 3.9e-28 129.8 324 30.6
EL10Ac2g03684 Beta vulgaris HOM05D006943 ORTHO05D008565 1.5e-27 127.9 331 30.8
arahy.Tifrunner.gnm1.ann1.X8DLDE Arachis hypogaea HOM05D006943 ORTHO05D008565 2.0e-27 127.5 361 27.4
FvH4_2g36510 Fragaria vesca HOM05D006943 ORTHO05D008565 3.3e-27 126.7 180 39.4
FAN27G2029 Fragaria x ananassa HOM05D006943 ORTHO05D008565 3.3e-27 126.7 180 38.9
arahy.Tifrunner.gnm1.ann1.HML22G Arachis hypogaea HOM05D006943 ORTHO05D008565 1.3e-26 124.8 361 27.1
FAN20G3130 Fragaria x ananassa HOM05D006943 ORTHO05D008565 1.3e-26 124.8 178 37.6
Eucgr.L02411 Eucalyptus grandis HOM05D006943 ORTHO05D008565 1.7e-26 124.4 146 46.6
FAN15G2754 Fragaria x ananassa HOM05D006943 ORTHO05D008565 2.2e-26 124.0 178 37.1
HanXRQChr17g0539241 Helianthus annuus HOM05D006943 ORTHO05D008565 2.2e-26 124.0 309 31.1
Medtr1g009220 Medicago truncatula HOM05D006943 ORTHO05D008565 2.2e-26 124.0 330 30.9
VMungo0647G1044 Vigna mungo HOM05D006943 ORTHO05D008565 2.2e-26 124.0 322 32.9
AUR62020649 Chenopodium quinoa HOM05D006943 ORTHO05D008565 4.8e-26 122.9 323 29.4
Manes.16G137900 Manihot esculenta HOM05D006943 ORTHO05D008565 1.8e-25 120.9 324 29.6
Phvul.001G077900 Phaseolus vulgaris HOM05D006943 ORTHO05D008565 1.8e-25 120.9 313 30.4
Ah.11g044140 Amaranthus hybridus HOM05D006943 ORTHO05D008565 2.4e-25 120.6 314 27.7
MSTRG.13940 Avicennia marina HOM05D006943 ORTHO05D008565 6.9e-25 119.0 162 43.8
Atru.chr7.2692 Acer truncatum HOM05D006943 ORTHO05D008565 1.2e-24 118.2 310 30.0
Aqoxy7G02511 Aquilegia oxysepala HOM05D006943 ORTHO05D008565 3.4e-24 116.7 319 28.2
Lj5g0018295 Lotus japonicus HOM05D006943 ORTHO05D008565 3.4e-24 116.7 328 27.4
RcHm_v2.0_Chr6g0305361 Rosa chinensis HOM05D006943 ORTHO05D008565 5.9e-24 115.9 177 38.4
ECA240G4190 Erigeron canadensis HOM05D006943 ORTHO05D008565 3.8e-23 113.2 322 29.5
MSTRG.13929 Avicennia marina HOM05D006943 ORTHO05D008565 5.0e-23 112.8 156 43.6
Hund03260 Selenicereus undatus HOM05D006943 ORTHO05D008565 8.5e-23 112.1 150 39.3
Prupe.1G456500 Prunus persica HOM05D006943 ORTHO05D008565 1.1e-22 111.7 327 27.5
Potri.018G002801 Populus trichocarpa HOM05D006943 ORTHO05D008565 7.2e-22 109.0 169 36.7
Potri.006G279100 Populus trichocarpa HOM05D006943 ORTHO05D008565 9.4e-22 108.6 178 34.3
CSS0045137 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 1.0e-20 105.1 142 39.4
Glyma.17G194700 Glycine max HOM05D006943 ORTHO05D008565 1.4e-20 104.8 315 28.6
MD15G1104200 Malus domestica HOM05D006943 ORTHO05D008565 6.7e-20 102.4 327 26.6
Psat6g033160 Pisum sativum HOM05D006943 ORTHO05D008565 4.4e-19 99.8 330 30.0
MD08G1124900 Malus domestica HOM05D006943 ORTHO05D008565 1.3e-18 98.2 315 27.3
Glyma.14G138000 Glycine max HOM05D006943 ORTHO05D008565 1.7e-18 97.8 322 28.0
TPR.G11968 Trifolium pratense HOM05D006943 ORTHO05D008565 8.2e-18 95.5 434 24.7
MBI16_g00837_MAGBIO Magnolia biondii HOM05D006943 ORTHO05D008565 1.8e-17 94.4 149 36.2
HPP92_021992 Vanilla planifolia HOM05D006943 ORTHO05D008565 1.8e-17 94.4 322 28.0
PSO170G5679 Papaver somniferum HOM05D006943 ORTHO05D008565 7.0e-17 92.4 181 33.7
PSO063G4511 Papaver somniferum HOM05D006943 ORTHO05D008565 9.1e-17 92.0 181 33.7
ATR0626G281 Amborella trichopoda HOM05D006943 ORTHO05D008565 2.0e-16 90.9 144 36.1
CDE02G0425 Ceratophyllum demersum HOM05D006943 ORTHO05D008565 3.8e-15 86.7 149 37.6
CSS0031863 Camellia sinensis var. sinensis HOM05D006943 ORTHO05D008565 4.7e-13 79.7 143 35.0
Zm00001eb233350 Zea mays HOM05D006943 ORTHO05D008565 9.7e-11 72.0 143 32.2
Os02g0174300 Oryza sativa ssp. japonica HOM05D006943 ORTHO05D008565 1.3e-10 71.6 118 33.9
MSTRG.13939 Avicennia marina HOM05D006943 ORTHO05D008565 1.1e-09 68.6 167 32.9
MSTRG.13928 Avicennia marina HOM05D006943 ORTHO05D008565 1.4e-09 68.2 167 32.9
MSTRG.13926 Avicennia marina HOM05D006943 ORTHO05D008565 1.8e-09 67.8 167 32.9
MSTRG.13927 Avicennia marina HOM05D006943 ORTHO05D008565 4.1e-09 66.6 164 32.9
Rhsim01G0256100 Rhododendron simsii HOM05D006943 ORTHO05D008565 7.0e-09 65.9 124 34.7
Actinidia03335 Actinidia chinensis HOM05D006943 ORTHO05D008565 1.2e-08 65.1 186 29.6
Dinv13726 Davidia involucrata HOM05D002537 ORTHO05D002751 1.2e-08 65.1 133 30.8
Pp3c4_22830 Physcomitrium patens HOM05D002537 ORTHO05D002751 3.5e-08 63.5 113 32.7
Pp3c4_22880 Physcomitrium patens HOM05D002537 ORTHO05D002751 3.5e-08 63.5 113 32.7
VMungo0331G1831 Vigna mungo HOM05D006943 ORTHO05D008565 5.9e-08 62.8 221 29.4
VMungo0720G0266 Vigna mungo HOM05D006943 ORTHO05D008565 1.0e-07 62.0 130 33.1
Actinidia22118 Actinidia chinensis HOM05D002537 ORTHO05D002751 1.7e-07 61.2 184 26.1
Mapoly0142s0034 Marchantia polymorpha HOM05D002537 ORTHO05D002751 1.7e-07 61.2 128 30.5
Mapoly0001s0020 Marchantia polymorpha HOM05D002537 ORTHO05D002751 2.2e-07 60.8 154 27.3
Atru.chr6.1911 Acer truncatum HOM05D002537 ORTHO05D002751 3.8e-07 60.1 129 27.1
Atru.chr6.219 Acer truncatum HOM05D006943 ORTHO05D008565 3.8e-07 60.1 66 37.9
DCAR_021402 Daucus carota HOM05D002537 ORTHO05D002751 5.0e-07 59.7 131 27.5
Lalb_Chr06g0170301 Lupinus albus HOM05D003725 ORTHO05D004294 6.5e-07 59.3 127 28.3
Peaxi162Scf00314g00642 Petunia axillaris HOM05D002537 ORTHO05D002751 6.5e-07 59.3 130 27.7
Pp3c15_4190 Physcomitrium patens HOM05D002537 ORTHO05D002751 1.1e-06 58.5 178 23.6
Lsat_1_v5_gn_5_10240 Lactuca sativa HOM05D002537 ORTHO05D002751 1.5e-06 58.2 122 30.3
Mapoly0043s0010 Marchantia polymorpha HOM05D002537 ORTHO05D002751 1.5e-06 58.2 109 27.5
Pp3c26_2600 Physcomitrium patens HOM05D002537 ORTHO05D002751 1.5e-06 58.2 191 28.3
Pp3c26_2630 Physcomitrium patens HOM05D002537 ORTHO05D002751 1.5e-06 58.2 191 28.3
Potri.001G066900 Populus trichocarpa HOM05D002537 ORTHO05D002751 1.5e-06 58.2 339 23.0
ATR0626G112 Amborella trichopoda HOM05D002537 ORTHO05D002751 2.5e-06 57.4 139 28.8
ECA246G2368 Erigeron canadensis HOM05D002537 ORTHO05D002751 5.5e-06 56.2 132 28.0
TAR374G1592 Trochodendron aralioides HOM05D002537 ORTHO05D002751 5.5e-06 56.2 132 29.5
C04p63060 Brassica napus HOM05D002537 ORTHO05D002751 7.2e-06 55.8 126 29.4
BolC4t27781H Brassica oleracea HOM05D002537 ORTHO05D002751 7.2e-06 55.8 126 29.4
BraA04t18085Z Brassica rapa HOM05D002537 ORTHO05D002751 7.2e-06 55.8 126 29.4
MELO3C022356.2 Cucumis melo HOM05D002537 ORTHO05D002751 7.2e-06 55.8 365 23.0
Manes.08G101700 Manihot esculenta HOM05D002537 ORTHO05D002751 7.2e-06 55.8 342 22.5
THA.LOC104812603 Tarenaya hassleriana HOM05D002537 ORTHO05D002751 7.2e-06 55.8 122 28.7
Cc00_g33380 Coffea canephora HOM05D002537 ORTHO05D002751 9.4e-06 55.5 157 26.1
Cc00_g33880 Coffea canephora HOM05D002537 ORTHO05D002751 9.4e-06 55.5 157 26.8
Dinv19305 Davidia involucrata HOM05D002537 ORTHO05D002751 9.4e-06 55.5 185 27.6
Nitab4.5_0000049g0070 Nicotiana tabacum HOM05D002537 ORTHO05D002751 9.4e-06 55.5 335 22.1


User provided reference genes

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