Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.4e-67 258.1 120 100.0
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.1e-65 253.1 120 96.7
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 2.8e-53 211.8 120 80.0
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 8.2e-53 210.3 120 79.2
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 8.2e-53 210.3 120 79.2
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 9.0e-52 206.8 120 78.3
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 1.2e-51 206.5 114 78.1
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 2.5e-49 198.7 114 74.6
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 4.2e-49 198.0 118 72.9
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.2e-49 198.0 118 72.9
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 4.2e-49 198.0 118 72.9
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 9.4e-49 196.8 120 75.8
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 2.1e-48 195.7 118 70.3
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.1e-48 195.7 118 70.3
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.1e-48 195.7 120 75.0
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.7e-48 195.3 118 70.3
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 6.1e-48 194.1 114 71.1
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 7.9e-48 193.7 117 70.1
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 7.9e-48 193.7 114 71.9
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 1.4e-47 193.0 118 70.3
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.4e-47 193.0 112 71.4
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.8e-47 192.6 120 70.8
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 2.3e-47 192.2 114 72.8
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 3.9e-47 191.4 114 71.9
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 8.8e-47 190.3 114 70.2
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 1.5e-46 189.5 118 68.6
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 2.0e-46 189.1 114 70.2
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 2.5e-46 188.7 114 73.7
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 3.3e-46 188.3 114 69.3
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 3.3e-46 188.3 114 69.3
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 4.3e-46 188.0 113 70.8
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 4.3e-46 188.0 114 69.3
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 4.3e-46 188.0 118 66.9
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 5.7e-46 187.6 114 72.8
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 5.7e-46 187.6 114 69.3
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 7.4e-46 187.2 118 67.8
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 7.4e-46 187.2 118 67.8
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 9.7e-46 186.8 114 71.9
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 9.7e-46 186.8 118 66.9
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 1.7e-45 186.0 118 68.6
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 2.2e-45 185.7 113 70.8
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 2.2e-45 185.7 118 67.8
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 2.2e-45 185.7 114 68.4
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.8e-45 185.3 114 67.5
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 2.8e-45 185.3 118 66.1
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 2.8e-45 185.3 118 68.6
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 4.8e-45 184.5 113 70.8
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 4.8e-45 184.5 114 69.3
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 4.8e-45 184.5 118 68.6
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 4.8e-45 184.5 118 66.1
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 4.8e-45 184.5 114 68.4
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 8.2e-45 183.7 114 67.5
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 1.1e-44 183.3 120 67.5
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 1.1e-44 183.3 122 65.6
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.1e-44 183.3 112 68.8
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 1.4e-44 183.0 114 67.5
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.8e-44 182.6 113 68.1
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 2.4e-44 182.2 113 69.9
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 3.1e-44 181.8 118 63.6
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 4.1e-44 181.4 106 76.4
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 5.3e-44 181.0 114 68.4
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 6.9e-44 180.6 118 63.6
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 6.9e-44 180.6 114 66.7
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 9.1e-44 180.3 114 66.7
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 9.1e-44 180.3 119 66.4
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 9.1e-44 180.3 114 64.9
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 9.1e-44 180.3 114 64.9
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.2e-43 179.9 112 67.0
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 1.5e-43 179.5 114 68.4
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 2.0e-43 179.1 114 67.5
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.0e-43 179.1 120 65.8
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.0e-43 179.1 114 64.9
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 2.6e-43 178.7 113 66.4
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 2.6e-43 178.7 114 65.8
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 4.5e-43 177.9 114 66.7
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.5e-43 177.9 115 69.6
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 7.7e-43 177.2 117 65.8
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 7.7e-43 177.2 113 65.5
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.0e-42 176.8 114 67.5
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.0e-42 176.8 114 64.9
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 1.0e-42 176.8 118 65.3
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.3e-42 176.4 113 66.4
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 2.2e-42 175.6 117 65.0
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 2.2e-42 175.6 113 63.7
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 2.2e-42 175.6 117 65.8
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 2.2e-42 175.6 114 68.4
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 2.9e-42 175.3 116 66.4
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 2.9e-42 175.3 117 66.7
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 2.9e-42 175.3 117 66.7
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.9e-42 175.3 114 67.5
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 2.9e-42 175.3 114 64.9
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 3.8e-42 174.9 113 65.5
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 3.8e-42 174.9 113 65.5
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 3.8e-42 174.9 118 63.6
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 6.5e-42 174.1 113 68.1
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 8.5e-42 173.7 115 66.1
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 1.1e-41 173.3 118 64.4
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 1.4e-41 172.9 117 65.8
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 1.4e-41 172.9 117 65.8
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 1.4e-41 172.9 117 65.8
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 1.4e-41 172.9 117 65.8
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 1.4e-41 172.9 120 63.3
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.9e-41 172.6 114 64.0
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.5e-41 172.2 113 64.6
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 3.2e-41 171.8 116 64.7
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 3.2e-41 171.8 116 64.7
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 3.2e-41 171.8 116 64.7
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 3.2e-41 171.8 114 63.2
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 4.2e-41 171.4 118 61.9
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 5.5e-41 171.0 115 63.5
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 7.2e-41 170.6 112 64.3
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 7.2e-41 170.6 120 60.8
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 7.2e-41 170.6 120 60.8
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 9.4e-41 170.2 118 62.7
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 9.4e-41 170.2 118 62.7
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 2.7e-40 168.7 114 64.0
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 3.6e-40 168.3 110 64.5
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 3.6e-40 168.3 116 63.8
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 3.6e-40 168.3 116 64.7
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 3.6e-40 168.3 114 61.4
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 4.7e-40 167.9 116 65.5
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 4.7e-40 167.9 114 64.9
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 6.1e-40 167.5 114 61.4
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 6.1e-40 167.5 120 63.3
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 7.9e-40 167.2 114 63.2
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.9e-40 167.2 110 68.2
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.0e-39 166.8 114 63.2
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 2.3e-39 165.6 109 64.2
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 8.8e-39 163.7 115 63.5
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.3e-37 159.8 112 61.6
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 1.8e-36 156.0 116 57.8
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.2e-35 153.3 112 57.1
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 2.0e-35 152.5 108 60.2
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 3.5e-35 151.8 109 57.8
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 4.5e-35 151.4 111 60.4
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.1e-33 146.7 92 68.5
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 1.9e-33 146.0 113 53.1
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.8e-31 139.4 115 55.7
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 2.3e-31 139.0 111 54.1
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.3e-31 139.0 96 64.6
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.1e-30 136.7 90 64.4
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 1.5e-30 136.3 120 52.5
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.5e-30 136.3 113 54.0
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 1.5e-30 136.3 111 50.5
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 2.0e-30 136.0 114 57.0
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.0e-30 136.0 93 63.4
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 7.4e-30 134.0 89 67.4
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.8e-28 129.4 116 50.9
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 2.4e-28 129.0 107 51.4
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 3.5e-27 125.2 109 51.4
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 2.1e-24 115.9 114 44.7
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 2.7e-24 115.5 109 48.6
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.0e-23 113.6 109 50.5
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 4.0e-23 111.7 111 47.7
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.0e-23 111.7 74 63.5
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 8.8e-23 110.5 110 49.1
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.5e-22 107.5 68 67.6
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.3e-21 106.7 68 69.1
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 4.8e-21 104.8 111 42.3
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 6.3e-21 104.4 117 40.2
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.1e-20 103.6 107 45.8
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 3.1e-20 102.1 111 43.2
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 3.1e-20 102.1 111 43.2
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 9.1e-20 100.5 119 43.7
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 8.5e-18 94.0 111 39.6
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 1.7e-13 79.7 53 67.9
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 4.8e-13 78.2 91 39.6
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 2.4e-12 75.9 65 49.2
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 9.5e-09 63.9 42 64.3
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 1.4e-07 60.1 75 40.0
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 1.8e-07 59.7 87 39.1
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 1.5e-06 56.6 34 64.7


User provided reference genes

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