Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 0.0e+00 1399.4 712 100.0
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 0.0e+00 1302.3 734 92.2
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 0.0e+00 1263.8 709 91.5
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 0.0e+00 1253.8 709 90.4
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 0.0e+00 1233.4 709 89.8
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 0.0e+00 1232.6 709 89.8
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 0.0e+00 1191.4 709 87.2
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 6.3e-310 1067.0 708 78.0
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 1.5e-308 1062.4 708 77.1
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 2.4e-301 1038.5 708 75.3
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 9.1e-301 1036.6 708 75.3
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 2.0e-300 1035.4 711 75.9
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 3.5e-300 1034.6 707 75.8
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 5.9e-300 1033.9 712 74.4
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 1.0e-299 1033.1 709 75.7
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 2.5e-298 1028.5 694 76.8
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 8.0e-297 1023.5 711 74.4
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 3.0e-296 1021.5 709 74.2
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 5.2e-296 1020.8 711 74.7
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 6.7e-296 1020.4 713 74.6
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 7.5e-295 1016.9 709 73.6
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.7e-294 1015.8 711 74.4
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 2.8e-294 1015.0 698 75.6
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 2.8e-294 1015.0 711 73.1
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 4.8e-294 1014.2 714 73.8
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 3.1e-293 1011.5 709 74.3
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 3.1e-293 1011.5 719 73.4
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 5.3e-293 1010.7 706 74.2
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 5.3e-293 1010.7 751 70.8
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 7.0e-293 1010.4 709 73.2
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 1.2e-292 1009.6 713 74.2
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 1.6e-292 1009.2 712 74.0
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 2.0e-292 1008.8 710 74.4
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 2.7e-292 1008.4 711 74.1
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 4.5e-292 1007.7 718 74.4
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 1.3e-291 1006.1 707 74.7
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 3.2e-290 1001.5 716 72.5
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 5.5e-290 1000.7 700 74.6
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 9.4e-290 1000.0 708 73.9
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 2.7e-289 998.4 709 71.2
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 4.7e-289 997.7 713 72.2
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 6.1e-289 997.3 714 72.4
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 1.8e-288 995.7 712 73.5
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 5.2e-288 994.2 716 72.3
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 5.2e-288 994.2 707 72.8
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 8.8e-288 993.4 708 72.7
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 1.7e-286 989.2 713 71.5
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 1.7e-286 989.2 707 71.7
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 2.2e-286 988.8 714 71.1
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 3.7e-286 988.0 714 72.0
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 6.3e-286 987.3 710 71.8
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 2.0e-284 982.2 715 72.6
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 4.5e-284 981.1 708 73.0
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 7.7e-284 980.3 670 74.8
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 1.3e-283 979.5 718 71.9
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 3.8e-283 978.0 711 71.4
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 5.0e-283 977.6 711 71.7
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 6.5e-283 977.2 721 70.7
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 6.5e-283 977.2 714 70.7
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 1.9e-282 975.7 721 71.4
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 1.9e-282 975.7 750 69.2
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 1.9e-282 975.7 710 71.8
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 2.5e-282 975.3 730 69.6
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 4.7e-281 971.1 710 70.7
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 1.4e-280 969.5 715 71.5
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 3.0e-280 968.4 722 71.2
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 4.0e-280 968.0 694 72.2
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 8.8e-280 966.8 747 69.2
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 4.4e-279 964.5 710 71.3
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 5.7e-279 964.1 715 71.0
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 2.8e-278 961.8 716 71.2
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 3.1e-277 958.4 716 70.5
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 1.6e-276 956.1 714 71.4
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 2.7e-276 955.3 710 69.6
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 5.9e-276 954.1 722 69.5
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 3.8e-275 951.4 712 70.8
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 7.3e-274 947.2 712 70.5
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 1.6e-273 946.0 713 70.3
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 1.8e-272 942.6 713 70.0
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 5.2e-272 941.0 709 69.1
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 3.4e-271 938.3 713 69.8
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 2.9e-270 935.3 716 69.1
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 2.9e-270 935.3 659 74.1
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 1.8e-269 932.6 712 68.1
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 3.2e-269 931.8 714 70.2
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.2e-268 929.9 715 69.5
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 7.5e-263 910.6 661 71.4
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 1.3e-262 909.8 665 71.7
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 1.7e-262 909.4 649 73.5
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 4.7e-257 891.3 713 67.0
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 9.9e-247 857.1 793 58.6
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 4.9e-246 854.7 715 65.5
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 2.8e-241 839.0 720 61.4
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 7.6e-231 804.3 538 76.2
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 2.2e-230 802.7 711 60.1
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.3e-219 766.9 712 60.1
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 1.8e-219 766.5 503 78.9
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 5.9e-199 698.4 563 64.8
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 2.2e-198 696.4 515 70.5
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 3.2e-197 692.6 518 71.0
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.4e-184 649.8 515 68.3
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 1.2e-175 620.9 620 55.0
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 8.6e-166 588.2 641 54.0
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 9.5e-149 531.6 410 67.8
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 1.2e-148 531.2 407 67.8
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 4.4e-146 522.7 384 70.6
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 8.9e-139 498.4 391 67.3
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.6e-127 461.1 368 64.1
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 2.8e-124 450.3 385 61.0
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 2.4e-123 447.2 346 65.3
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 6.9e-123 445.7 384 59.4
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 9.0e-123 445.3 372 63.4
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 3.8e-121 439.9 372 62.9
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 2.6e-114 417.2 503 50.9
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 8.2e-100 369.0 224 83.0
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 1.0e-89 335.5 261 70.5
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 1.8e-86 324.7 235 71.5
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 4.8e-68 263.5 159 82.4
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 1.6e-63 248.4 168 72.0
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 4.1e-59 233.8 139 84.9
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 9.1e-59 232.6 231 59.3
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 8.0e-55 219.5 327 41.6
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 5.0e-49 200.3 142 71.8
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 6.6e-49 199.9 148 70.9
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 6.1e-47 193.4 117 82.9
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.3e-46 191.4 131 74.0
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 4.4e-45 187.2 310 42.9
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 1.2e-42 179.1 107 83.2
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 1.6e-42 178.7 97 87.6
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 2.8e-39 167.9 118 75.4
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 3.5e-34 151.0 135 62.2
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 3.1e-30 137.9 292 34.2
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 3.4e-29 134.4 159 49.1
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 7.5e-29 133.3 93 72.0
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 3.2e-27 127.9 148 49.3
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 3.2e-27 127.9 94 69.1
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 9.9e-21 106.3 132 45.5
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 4.1e-19 100.9 115 52.2
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 1.6e-18 99.0 70 71.4
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 4.6e-18 97.4 58 75.9
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 5.1e-17 94.0 58 72.4
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 6.6e-17 93.6 98 53.1
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 4.3e-16 90.9 53 86.8
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 4.7e-15 87.4 79 57.0
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 1.4e-14 85.9 52 82.7
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 2.6e-13 81.6 52 78.8
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 8.4e-12 76.6 125 37.6
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 1.9e-11 75.5 73 58.9
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 4.2e-11 74.3 44 79.5
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 6.6e-09 67.0 36 94.4
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 3.1e-06 58.2 29 100.0
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 3.1e-06 58.2 29 100.0
MELO3C028166.2 Cucumis melo HOM05D004674 ORTHO05D029175 9.0e-06 56.6 29 96.6


User provided reference genes

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