Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001339g0110 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.0e-54 216.5 110 100.0
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 2.4e-27 125.6 92 72.8
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 2.4e-27 125.6 92 72.8
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 5.4e-27 124.4 97 68.0
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 5.4e-27 124.4 97 68.0
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 5.4e-27 124.4 97 68.0
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 7.1e-27 124.0 92 71.7
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 1.2e-26 123.2 97 67.0
Solyc00g500153.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.2e-26 123.2 85 75.3
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.2e-26 123.2 85 75.3
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 2.7e-26 122.1 97 66.0
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 3.5e-26 121.7 92 70.7
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 4.6e-26 121.3 92 69.6
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.3e-25 119.8 92 68.5
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.3e-25 119.8 92 68.5
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 1.3e-25 119.8 92 68.5
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 1.3e-25 119.8 92 68.5
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 1.3e-25 119.8 92 68.5
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 1.3e-25 119.8 92 68.5
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 1.3e-25 119.8 92 68.5
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 1.3e-25 119.8 92 68.5
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 1.3e-25 119.8 92 68.5
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 1.3e-25 119.8 92 68.5
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 1.3e-25 119.8 92 68.5
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 1.3e-25 119.8 92 68.5
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 1.3e-25 119.8 92 68.5
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 1.7e-25 119.4 97 66.0
HanXRQChr00c0593g0576401 Helianthus annuus HOM05D002578 ORTHO05D005154 1.7e-25 119.4 97 66.0
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 1.7e-25 119.4 97 66.0
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 1.7e-25 119.4 97 66.0
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 1.7e-25 119.4 97 66.0
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 1.7e-25 119.4 97 66.0
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 1.7e-25 119.4 97 66.0
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 1.7e-25 119.4 97 66.0
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 5.1e-25 117.9 92 68.5
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 6.6e-25 117.5 97 64.9
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 8.6e-25 117.1 95 64.2
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 8.6e-25 117.1 93 68.8
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 8.6e-25 117.1 91 69.2
QL93p1043_0025 Quercus lobata HOM05D002578 ORTHO05D005154 1.1e-24 116.7 92 67.4
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 1.5e-24 116.3 92 66.3
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 1.5e-24 116.3 97 63.9
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 1.9e-24 115.9 101 63.4
Ah.10g027320 Amaranthus hybridus HOM05D002578 ORTHO05D005154 2.5e-24 115.5 100 64.0
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 2.5e-24 115.5 92 67.4
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.5e-24 115.5 92 66.3
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.5e-24 115.5 92 66.3
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.5e-24 115.5 92 66.3
Gohir.D01G102164 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.5e-24 115.5 92 66.3
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.5e-24 115.5 92 66.3
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 2.5e-24 115.5 92 66.3
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 3.3e-24 115.2 93 67.7
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 4.3e-24 114.8 92 66.3
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 4.3e-24 114.8 92 66.3
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 4.3e-24 114.8 92 66.3
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 4.3e-24 114.8 92 66.3
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 4.3e-24 114.8 92 66.3
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 5.6e-24 114.4 97 62.9
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 9.5e-24 113.6 92 66.3
Gohir.A02G112702 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.2e-23 113.2 92 65.2
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 2.8e-23 112.1 97 61.9
HanXRQChr11g0321131 Helianthus annuus HOM05D002578 ORTHO05D005154 2.8e-23 112.1 108 60.2
MELO3C004853.2 Cucumis melo HOM05D002578 ORTHO05D005154 6.2e-23 110.9 92 65.2
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 6.2e-23 110.9 92 65.2
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 6.2e-23 110.9 92 65.2
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 6.2e-23 110.9 92 65.2
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 8.1e-23 110.5 92 64.1
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 8.1e-23 110.5 92 64.1
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 3.1e-22 108.6 92 64.1
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 3.1e-22 108.6 92 63.0
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 3.4e-21 105.1 92 59.8
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 3.4e-21 105.1 92 60.9
Lj2P1237T124 Lonicera japonica HOM05D002578 ORTHO05D005154 7.6e-21 104.0 97 58.8
Lj2P1239T79 Lonicera japonica HOM05D002578 ORTHO05D005154 7.6e-21 104.0 97 58.8
Lju5009P0T57 Lonicera japonica HOM05D002578 ORTHO05D005154 7.6e-21 104.0 97 58.8
Eucgr.E01404 Eucalyptus grandis HOM05D002578 ORTHO05D005154 9.9e-21 103.6 92 58.7
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 9.9e-21 103.6 92 60.9
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.7e-20 102.8 80 68.8
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.2e-20 102.4 93 59.1
Lsat_1_v5_gn_5_168120 Lactuca sativa HOM05D002578 ORTHO05D005154 4.9e-20 101.3 96 59.4
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 8.4e-20 100.5 92 60.9
Medtr8g038470 Medicago truncatula HOM05D002578 ORTHO05D005154 1.4e-19 99.8 111 51.4
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 3.2e-19 98.6 105 53.3
Lalb_Chr23g0274261 Lupinus albus HOM05D002578 ORTHO05D005154 2.7e-18 95.5 88 58.0
arahy.Tifrunner.gnm1.ann1.EHS3F0 Arachis hypogaea HOM05D002578 ORTHO05D005154 4.6e-18 94.7 81 56.8
Hund30213 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.7e-17 92.8 85 60.0
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 3.0e-17 92.0 76 65.8
AL2G21750 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 5.1e-17 91.3 53 83.0
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 6.6e-17 90.9 79 59.5
Psat3g190920 Pisum sativum HOM05D002578 ORTHO05D005154 1.1e-16 90.1 90 53.3
Psat4g046880 Pisum sativum HOM05D002578 ORTHO05D005154 1.1e-16 90.1 90 53.3
AL5G19940 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.5e-16 89.7 67 67.2
Eucgr.C03015 Eucalyptus grandis HOM05D002578 ORTHO05D005154 2.5e-16 89.0 78 61.5
Psat5g168200 Pisum sativum HOM05D002578 ORTHO05D005154 4.3e-16 88.2 90 52.2
Nn4g25225 Nelumbo nucifera HOM05D002578 ORTHO05D005154 7.3e-16 87.4 52 84.6
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 9.6e-16 87.0 78 60.3
Gorai.012G056700 Gossypium raimondii HOM05D002578 ORTHO05D005154 1.2e-15 86.7 72 59.7
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 1.6e-15 86.3 92 51.1
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 1.6e-15 86.3 92 51.1
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 8.1e-15 84.0 92 50.0
Potri.017G072340 Populus trichocarpa HOM05D002578 ORTHO05D005154 1.1e-14 83.6 53 75.5
Gohir.D04G051050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 3.1e-14 82.0 55 67.3
Hund07448 Selenicereus undatus HOM05D002578 ORTHO05D005154 4.0e-14 81.6 75 57.3
arahy.Tifrunner.gnm1.ann1.R0YUWC Arachis hypogaea HOM05D002578 ORTHO05D005154 6.9e-14 80.9 58 69.0
Eucgr.F03422 Eucalyptus grandis HOM05D002578 ORTHO05D005154 3.4e-13 78.6 94 46.8
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 1.3e-12 76.6 63 63.5
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 2.2e-12 75.9 88 48.9
Lalb_Chr13g0292561 Lupinus albus HOM05D002578 ORTHO05D005154 8.4e-12 73.9 92 48.9
Zm00001eb434870 Zea mays HOM05D002578 ORTHO05D005154 7.1e-11 70.9 67 53.7
Zm00001eb435640 Zea mays HOM05D002578 ORTHO05D005154 7.1e-11 70.9 67 53.7
Zm00001eb437960 Zea mays HOM05D002578 ORTHO05D005154 7.1e-11 70.9 67 53.7
Zm00001eb439940 Zea mays HOM05D002578 ORTHO05D005154 7.1e-11 70.9 67 53.7
Zm00001eb439960 Zea mays HOM05D002578 ORTHO05D005154 7.1e-11 70.9 67 53.7
Zm00001eb440780 Zea mays HOM05D002578 ORTHO05D005154 7.1e-11 70.9 67 53.7
Eucgr.L01887 Eucalyptus grandis HOM05D002578 ORTHO05D005154 2.7e-10 68.9 46 73.9
CiPaw.10G131300 Carya illinoinensis HOM05D002578 ORTHO05D005154 1.0e-09 67.0 79 43.0
Cpa.g.sc301.3 Carica papaya HOM05D002578 ORTHO05D005820 1.3e-09 66.6 55 67.3
Ciclev10006396m.g Citrus clementina HOM05D002578 ORTHO05D005154 1.7e-09 66.2 40 75.0
Oeu062830.1 Olea europaea HOM05D002578 ORTHO05D005154 1.7e-09 66.2 40 77.5
Ah.10g029000 Amaranthus hybridus HOM05D002578 ORTHO05D002698 3.9e-09 65.1 41 78.0
SEGI_06953 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 5.1e-09 64.7 88 44.3
SEGI_07135 Sequoiadendron giganteum HOM05D000890 ORTHO05D000697 5.1e-09 64.7 88 44.3
SEGI_26563 Sequoiadendron giganteum HOM05D000540 ORTHO05D002320 5.1e-09 64.7 88 44.3
SEGI_30011 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 5.1e-09 64.7 88 44.3
SEGI_35211 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 5.1e-09 64.7 88 44.3
SEGI_36364 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 5.1e-09 64.7 88 44.3
SEGI_41075 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 5.1e-09 64.7 88 44.3
SEGI_32412 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 1.5e-08 63.2 88 43.2
SEGI_06984 Sequoiadendron giganteum HOM05D002578 ORTHO05D005154 7.3e-08 60.8 98 41.8
SEGI_12372 Sequoiadendron giganteum HOM05D000445 ORTHO05D005154 7.3e-08 60.8 88 43.2
TWI14G1004 Tripterygium wilfordii HOM05D002578 ORTHO05D005154 7.3e-08 60.8 59 59.3
SMO086G0021 Selaginella moellendorffii HOM05D002578 ORTHO05D005154 6.2e-07 57.8 80 41.2
Mapoly0015s0207 Marchantia polymorpha HOM05D002578 ORTHO05D005154 8.1e-07 57.4 62 48.4
CsaV3_4G010600 Cucumis sativus L. HOM05D002578 ORTHO05D005154 1.4e-06 56.6 53 60.4
SEGI_09039 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 2.4e-06 55.8 63 47.6
SEGI_31371 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 2.4e-06 55.8 63 47.6
SEGI_36078 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.4e-06 55.8 63 47.6
Sc25g0002540 Simmondsia chinensis HOM05D002578 ORTHO05D001488 2.4e-06 55.8 35 68.6
HanXRQChr14g0432301 Helianthus annuus HOM05D002578 ORTHO05D005154 4.0e-06 55.1 38 65.8
SEGI_13221 Sequoiadendron giganteum HOM05D000540 ORTHO05D004018 5.3e-06 54.7 79 41.8


User provided reference genes

Program Settings