Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001298g0070 Nicotiana tabacum HOM05D003481 ORTHO05D004001 2.3e-193 678.7 335 100.0
Nitab4.5_0000378g0100 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.8e-105 386.7 202 96.5
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 2.3e-97 359.8 504 46.2
Solyc02g030110.2 Solanum lycopersicum HOM05D003481 ORTHO05D004001 6.8e-97 358.2 202 89.6
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 8.8e-97 357.8 505 45.9
Peaxi162Scf00267g00817 Petunia axillaris HOM05D003481 ORTHO05D004001 4.4e-88 328.9 448 46.7
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 2.0e-72 276.9 202 71.3
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.7e-71 273.9 210 68.1
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.1e-70 271.2 210 67.6
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 1.9e-70 270.4 202 69.3
Lj1A1155G48 Lonicera japonica HOM05D003481 ORTHO05D004001 3.0e-68 263.1 203 66.0
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 2.4e-65 253.4 202 65.8
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 1.2e-64 251.1 225 58.2
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 4.9e-63 245.7 220 56.8
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 4.1e-62 242.7 227 55.9
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 1.2e-61 241.1 202 62.4
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 2.7e-61 240.0 225 56.9
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 3.5e-61 239.6 234 55.6
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 7.8e-61 238.4 215 60.0
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 1.3e-60 237.7 202 61.9
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 3.0e-60 236.5 225 57.3
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 3.9e-60 236.1 221 58.4
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 1.5e-59 234.2 225 55.6
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 1.5e-59 234.2 236 54.7
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.9e-59 233.8 236 54.7
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 2.5e-59 233.4 216 59.7
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 2.5e-59 233.4 206 60.2
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 3.3e-59 233.0 225 55.6
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 4.3e-59 232.6 224 54.0
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 5.6e-59 232.3 234 54.3
Manes.03G069500 Manihot esculenta HOM05D003481 ORTHO05D004001 5.6e-59 232.3 222 56.3
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 5.6e-59 232.3 251 53.8
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 2.1e-58 230.3 224 55.8
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 2.1e-58 230.3 222 57.7
TAR624G0033 Trochodendron aralioides HOM05D003481 ORTHO05D004001 4.7e-58 229.2 225 54.7
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 6.2e-58 228.8 221 54.8
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 6.2e-58 228.8 214 56.5
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 8.1e-58 228.4 209 56.5
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 8.1e-58 228.4 209 57.4
Prupe.6G356900 Prunus persica HOM05D003481 ORTHO05D004001 1.1e-57 228.0 225 55.1
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 1.4e-57 227.6 220 56.4
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 1.8e-57 227.3 204 58.8
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 2.4e-57 226.9 226 54.0
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 2.4e-57 226.9 225 53.8
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 3.1e-57 226.5 224 54.5
Haze_05982 Corylus avellana HOM05D003481 ORTHO05D004001 5.2e-57 225.7 224 54.9
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 6.9e-57 225.3 220 55.5
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 9.0e-57 224.9 270 50.0
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 9.0e-57 224.9 225 55.1
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 1.2e-56 224.6 224 53.6
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 1.5e-56 224.2 224 55.4
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 1.5e-56 224.2 226 55.8
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 1.5e-56 224.2 203 57.6
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 2.0e-56 223.8 207 56.5
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 2.6e-56 223.4 266 49.6
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 2.6e-56 223.4 274 48.9
arahy.Tifrunner.gnm1.ann1.0SF8RD Arachis hypogaea HOM05D003481 ORTHO05D004001 3.4e-56 223.0 221 55.7
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 3.4e-56 223.0 219 55.3
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 4.4e-56 222.6 215 55.8
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 9.9e-56 221.5 222 53.6
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 9.9e-56 221.5 224 54.0
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 1.3e-55 221.1 206 60.2
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 1.7e-55 220.7 218 56.4
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 1.7e-55 220.7 318 45.3
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 1.7e-55 220.7 224 55.4
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 2.2e-55 220.3 219 55.3
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 2.2e-55 220.3 203 57.6
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 3.8e-55 219.5 202 57.4
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 4.9e-55 219.2 237 53.6
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 6.4e-55 218.8 219 53.9
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 8.4e-55 218.4 237 53.2
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 1.4e-54 217.6 224 53.1
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 1.9e-54 217.2 260 50.4
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 2.4e-54 216.9 219 54.8
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 2.4e-54 216.9 219 53.4
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 3.2e-54 216.5 214 55.6
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 4.2e-54 216.1 228 52.6
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 5.4e-54 215.7 224 52.7
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 5.4e-54 215.7 214 55.1
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 1.2e-53 214.5 200 57.5
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 2.1e-53 213.8 234 53.0
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 4.6e-53 212.6 221 55.2
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 1.0e-52 211.5 219 52.1
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 8.7e-52 208.4 202 54.5
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 1.5e-51 207.6 211 53.1
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 3.3e-51 206.5 214 52.3
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 3.3e-51 206.5 214 52.3
CSS0035493 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 3.3e-51 206.5 151 66.2
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 9.6e-51 204.9 211 53.1
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 9.6e-51 204.9 261 48.3
SHI31589 Sapria himalayana HOM05D003481 ORTHO05D004001 1.3e-50 204.5 207 53.6
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 1.6e-50 204.1 227 52.4
SEGI_29135 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 6.2e-50 202.2 212 51.9
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 1.4e-49 201.1 221 50.7
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 1.8e-49 200.7 222 51.8
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 1.8e-49 200.7 214 51.9
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 1.8e-49 200.7 128 71.9
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.8e-49 200.7 230 53.0
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.8e-49 200.7 228 51.8
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 2.4e-49 200.3 217 51.6
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 2.4e-49 200.3 222 52.3
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 2.4e-49 200.3 222 52.3
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 3.1e-49 199.9 228 51.8
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 6.9e-49 198.7 222 52.3
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 6.9e-49 198.7 222 51.8
ATR1132G011 Amborella trichopoda HOM05D003481 ORTHO05D004001 1.2e-48 198.0 221 50.2
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 1.2e-48 198.0 222 49.5
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 4.5e-48 196.1 216 49.1
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 5.8e-48 195.7 215 51.6
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 7.6e-48 195.3 217 51.2
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 1.3e-47 194.5 211 50.7
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 2.2e-47 193.7 215 50.7
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 8.4e-47 191.8 223 49.8
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 8.4e-47 191.8 206 51.0
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 7.1e-46 188.7 197 51.8
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 5.1e-44 182.6 209 49.8
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 5.1e-44 182.6 208 47.1
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 1.8e-41 174.1 182 51.6
AagrBONN_evm.TU.Sc2ySwM_117.2303 Anthoceros agrestis HOM05D003481 ORTHO05D004001 2.7e-37 160.2 141 58.2
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 2.7e-37 160.2 202 47.5
MBI19_g43313_MAGBIO Magnolia biondii HOM05D003481 ORTHO05D004001 5.1e-36 156.0 222 44.1
CBR_g66144 Chara braunii HOM05D003481 ORTHO05D004001 6.5e-31 139.0 87 72.4
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 8.4e-31 138.7 225 40.0
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 9.7e-27 125.2 157 45.9
Aqoxy3G00998 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 6.9e-25 119.0 125 52.8
Sabra16G0299600 Salix brachista HOM05D003481 ORTHO05D004001 1.2e-24 118.2 168 44.6
Lsat_1_v5_gn_3_92020 Lactuca sativa HOM05D002302 ORTHO05D002728 5.3e-17 92.8 157 39.5
Oeu001605.1 Olea europaea HOM05D003481 ORTHO05D004001 1.2e-16 91.7 132 43.2
Manes.03G070216 Manihot esculenta HOM05D003481 ORTHO05D004001 1.5e-16 91.3 71 66.2
RcHm_v2.0_Chr7g0240301 Rosa chinensis HOM05D003481 ORTHO05D004001 2.6e-16 90.5 239 30.1
arahy.Tifrunner.gnm1.ann1.SFPI36 Arachis hypogaea HOM05D003481 ORTHO05D004001 2.9e-15 87.0 51 76.5
Lj1A1155T51 Lonicera japonica HOM05D003481 ORTHO05D004001 5.0e-15 86.3 47 85.1
Actinidia33646 Actinidia chinensis HOM05D003481 ORTHO05D004001 6.5e-15 85.9 55 74.5
Actinidia29309 Actinidia chinensis HOM05D003481 ORTHO05D004001 7.2e-14 82.4 49 75.5
arahy.Tifrunner.gnm1.ann1.R9RUHP Arachis hypogaea HOM05D003481 ORTHO05D004001 1.6e-13 81.3 48 81.2
PRCOL_00001035 Prasinoderma coloniale HOM05D003481 ORTHO05D004001 2.1e-13 80.9 133 36.1
Os04g0212200 Oryza sativa ssp. japonica HOM05D003481 ORTHO05D004001 1.8e-12 77.8 47 74.5
CBR_g56099 Chara braunii HOM05D003481 ORTHO05D004001 7.4e-11 72.4 56 60.7
Cre02.g087551 Chlamydomonas reinhardtii HOM05D003481 ORTHO05D004001 8.2e-10 68.9 110 30.0
Sabra16G0301200 Salix brachista HOM05D003481 ORTHO05D004001 1.1e-09 68.6 141 36.2
Nitab4.5_0003773g0070 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.8e-09 67.8 37 86.5
SHI31592 Sapria himalayana HOM05D003481 ORTHO05D004001 5.3e-09 66.2 47 70.2
arahy.Tifrunner.gnm1.ann1.16LSI5 Arachis hypogaea HOM05D003481 ORTHO05D004001 1.4e-06 58.2 118 33.9
Lsat_1_v5_gn_0_25080 Lactuca sativa HOM05D003481 ORTHO05D004001 9.4e-06 55.5 183 30.1


User provided reference genes

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