Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 2.4e-195 685.3 336 100.0
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 4.1e-187 657.9 336 95.2
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 4.6e-170 601.3 336 87.2
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 6.0e-170 600.9 336 87.5
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 7.9e-170 600.5 336 86.0
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 1.1e-166 590.1 336 84.8
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 1.4e-139 500.0 336 72.9
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 3.2e-139 498.8 334 71.9
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 3.2e-139 498.8 336 71.7
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 4.7e-138 495.0 333 73.3
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 2.3e-137 492.7 335 70.1
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 3.9e-137 491.9 333 70.9
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 4.4e-136 488.4 336 71.4
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 1.1e-134 483.8 331 71.6
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 2.4e-134 482.6 335 72.2
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 2.6e-133 479.2 333 71.2
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 2.2e-132 476.1 332 71.1
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 6.5e-132 474.6 330 69.7
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 8.5e-132 474.2 333 70.0
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 1.4e-131 473.4 332 70.8
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 5.5e-131 471.5 332 68.7
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 9.4e-131 470.7 336 67.9
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 9.4e-131 470.7 332 68.7
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 1.2e-130 470.3 332 69.9
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 2.1e-130 469.5 330 70.9
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 1.4e-129 466.8 337 69.7
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 1.4e-129 466.8 332 69.0
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 1.8e-129 466.5 338 70.7
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 3.0e-129 465.7 336 69.3
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 5.2e-129 464.9 335 69.6
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 5.2e-129 464.9 332 68.4
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 6.7e-129 464.5 332 68.4
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 6.7e-129 464.5 332 69.9
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 8.8e-129 464.2 336 69.3
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 1.5e-128 463.4 332 68.7
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 3.3e-128 462.2 335 69.0
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 1.3e-127 460.3 336 68.5
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 1.7e-127 459.9 338 68.6
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 1.7e-127 459.9 329 68.1
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 2.2e-127 459.5 337 68.8
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 6.3e-127 458.0 337 65.9
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 9.1e-126 454.1 333 67.6
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 1.2e-125 453.8 360 63.9
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 2.6e-125 452.6 332 67.8
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 3.5e-125 452.2 331 68.3
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 2.9e-124 449.1 337 66.2
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 3.8e-124 448.7 333 67.3
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 8.5e-124 447.6 333 66.1
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 1.9e-123 446.4 333 67.6
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 2.5e-123 446.0 333 65.5
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 2.5e-123 446.0 337 66.8
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 4.2e-123 445.3 332 65.7
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 5.5e-123 444.9 344 66.3
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 5.5e-123 444.9 331 67.7
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 7.2e-123 444.5 331 68.0
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 9.4e-123 444.1 338 65.7
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 9.4e-123 444.1 338 65.7
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 9.4e-123 444.1 330 67.9
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 2.7e-122 442.6 335 64.8
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 3.6e-122 442.2 332 65.4
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 2.3e-121 439.5 380 60.8
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 4.0e-121 438.7 331 67.1
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 5.7e-120 434.9 332 65.4
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 5.7e-120 434.9 342 64.3
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 7.5e-120 434.5 347 63.1
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 1.3e-119 433.7 324 70.1
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 4.5e-117 425.2 331 63.7
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 1.3e-111 407.1 330 62.7
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 2.2e-111 406.4 331 63.7
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 1.2e-109 400.6 330 62.1
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 1.2e-109 400.6 292 68.8
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 2.0e-109 399.8 336 60.4
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 2.7e-109 399.4 330 61.5
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 5.9e-109 398.3 332 61.4
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 1.0e-108 397.5 332 61.4
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 1.3e-108 397.1 330 61.5
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 2.3e-108 396.4 330 61.5
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 2.3e-108 396.4 330 61.5
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 1.1e-107 394.0 337 58.5
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 1.9e-107 393.3 332 60.2
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 4.7e-106 388.7 340 57.9
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 1.0e-105 387.5 334 59.6
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 2.3e-105 386.3 333 60.1
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 3.7e-103 379.0 328 58.2
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 3.7e-103 379.0 336 57.7
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 6.3e-103 378.3 330 57.0
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 4.1e-102 375.6 340 57.6
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 2.0e-101 373.2 336 58.0
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 2.7e-101 372.9 353 55.8
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 3.9e-100 369.0 328 57.9
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 1.6e-98 363.6 336 56.8
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 1.6e-98 363.6 243 73.3
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 1.4e-97 360.5 339 56.0
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 5.2e-97 358.6 307 61.2
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 2.1e-90 336.7 311 58.8
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 3.2e-86 322.8 246 67.9
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 5.8e-80 302.0 276 55.4
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 7.5e-80 301.6 357 46.5
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 3.5e-77 292.7 340 48.5
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 7.6e-72 275.0 348 44.5
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 5.1e-68 262.3 180 71.7
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 5.4e-62 242.3 464 34.5
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 6.0e-61 238.8 311 44.4
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 6.2e-58 228.8 341 38.4
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 5.3e-57 225.7 336 39.6
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 1.5e-56 224.2 196 59.7
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 4.5e-56 222.6 163 69.3
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 2.2e-55 220.3 147 72.1
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 3.1e-41 173.3 177 54.8
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.6e-37 161.0 166 50.6
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 2.1e-37 160.6 147 54.4
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 2.2e-34 150.6 150 53.3
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 2.8e-34 150.2 162 50.6
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 8.2e-34 148.7 150 50.7
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 8.8e-28 128.6 81 72.8
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 1.7e-23 114.4 74 68.9
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 1.6e-21 107.8 63 73.0
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 9.7e-19 98.6 132 42.4
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 4.2e-14 83.2 57 66.7
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 1.2e-13 81.6 131 42.7
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 6.1e-13 79.3 58 62.1
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 1.1e-11 75.1 75 46.7
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 8.2e-10 68.9 44 81.8
Dinv43551 Davidia involucrata HOM05D006268 ORTHO05D180404 9.1e-09 65.5 80 45.0
C09p50070 Brassica napus HOM05D006268 ORTHO05D008118 1.0e-07 62.0 81 44.4
SGA_v2.0_scaffold7G03663 Striga asiatica HOM05D000015 ORTHO05D000984 9.4e-06 55.5 33 75.8


User provided reference genes

Program Settings