Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001105g0140 Nicotiana tabacum HOM05D000580 ORTHO05D006815 8.6e-45 183.3 97 100.0
SGA_v2.0_scaffold479G52254 Striga asiatica HOM05D000580 ORTHO05D006815 1.6e-30 136.0 121 64.5
CAN.G219.32 Capsicum annuum HOM05D000580 ORTHO05D006815 4.3e-28 127.9 79 83.5
HanXRQChr05g0139711 Helianthus annuus HOM05D000580 ORTHO05D006815 4.8e-27 124.4 79 81.0
HanXRQChr05g0152611 Helianthus annuus HOM05D000580 ORTHO05D006815 4.8e-27 124.4 79 81.0
HanXRQChr08g0223961 Helianthus annuus HOM05D000580 ORTHO05D006815 4.8e-27 124.4 79 81.0
HanXRQChr10g0283641 Helianthus annuus HOM05D000580 ORTHO05D006815 4.8e-27 124.4 79 81.0
HanXRQChr10g0284331 Helianthus annuus HOM05D000580 ORTHO05D006815 4.8e-27 124.4 79 81.0
HanXRQChr10g0318111 Helianthus annuus HOM05D000580 ORTHO05D006815 4.8e-27 124.4 79 81.0
HanXRQChr11g0341921 Helianthus annuus HOM05D000580 ORTHO05D006815 4.8e-27 124.4 79 81.0
HanXRQChr14g0459311 Helianthus annuus HOM05D000580 ORTHO05D006815 4.8e-27 124.4 79 81.0
HanXRQCPg0580131 Helianthus annuus HOM05D000580 ORTHO05D006815 4.8e-27 124.4 79 81.0
HanXRQChr02g0038651 Helianthus annuus HOM05D000580 ORTHO05D006815 1.4e-26 122.9 79 81.0
Hund29679 Selenicereus undatus HOM05D000580 ORTHO05D006815 1.8e-26 122.5 96 71.9
HanXRQChr02g0052691 Helianthus annuus HOM05D000580 ORTHO05D006815 2.4e-26 122.1 79 79.7
Lalb_Chr10g0093221 Lupinus albus HOM05D000580 ORTHO05D006815 9.0e-26 120.2 74 85.1
Lalb_Chr25g0283341 Lupinus albus HOM05D000580 ORTHO05D006815 9.0e-26 120.2 74 85.1
PGR111G0073 Punica granatum HOM05D000580 ORTHO05D006815 9.0e-26 120.2 74 85.1
Gohir.1Z049866 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.2e-25 119.8 74 82.4
HanXRQChr04g0094321 Helianthus annuus HOM05D000580 ORTHO05D006815 1.2e-25 119.8 79 78.5
CSS0026029 Camellia sinensis var. sinensis HOM05D000580 ORTHO05D006815 2.0e-25 119.0 74 83.8
CAN.G131.5 Capsicum annuum HOM05D000580 ORTHO05D006815 2.0e-25 119.0 74 83.8
CAN.G1513.10 Capsicum annuum HOM05D000580 ORTHO05D006815 2.0e-25 119.0 74 83.8
Hma1.2p1_0218F.1_g092720 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 2.0e-25 119.0 79 77.2
Hma1.2p1_2223F.1_g317406 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 2.0e-25 119.0 79 77.2
CAN.G1595.6 Capsicum annuum HOM05D000580 ORTHO05D006815 2.6e-25 118.6 74 82.4
CAN.G129.14 Capsicum annuum HOM05D000580 ORTHO05D006815 5.8e-25 117.5 79 78.5
Gohir.A03G093700 Gossypium hirsutum HOM05D000580 ORTHO05D006815 7.6e-25 117.1 74 81.1
CAN.G1478.5 Capsicum annuum HOM05D000580 ORTHO05D006815 9.9e-25 116.7 90 72.2
Gohir.1Z078601 Gossypium hirsutum HOM05D000580 ORTHO05D006815 9.9e-25 116.7 74 81.1
Gohir.A09G043800 Gossypium hirsutum HOM05D000580 ORTHO05D006815 9.9e-25 116.7 74 81.1
Gohir.D01G102060 Gossypium hirsutum HOM05D000580 ORTHO05D006815 9.9e-25 116.7 74 81.1
Gorai.010G031500 Gossypium raimondii HOM05D000580 ORTHO05D006815 9.9e-25 116.7 74 81.1
Potri.011G074901 Populus trichocarpa HOM05D000580 ORTHO05D006815 9.9e-25 116.7 74 82.4
Potri.011G113742 Populus trichocarpa HOM05D000580 ORTHO05D006815 9.9e-25 116.7 74 82.4
Potri.019G028200 Populus trichocarpa HOM05D000580 ORTHO05D006815 9.9e-25 116.7 74 82.4
HanXRQChr11g0345231 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-24 116.3 79 77.2
Nn049s41914 Nelumbo nucifera HOM05D000580 ORTHO05D006815 1.7e-24 115.9 74 82.4
CiPaw.10G124800 Carya illinoinensis HOM05D000580 ORTHO05D006815 2.9e-24 115.2 74 82.4
Gohir.A12G178620 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.9e-24 114.4 74 79.7
Gohir.A12G178630 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.9e-24 114.4 74 79.7
Gohir.A12G178665 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.9e-24 114.4 74 79.7
BNapus_Darmor_BZH_scaffold_253p00300 Brassica napus HOM05D000580 ORTHO05D006815 6.4e-24 114.0 74 81.1
BNapus_Darmor_BZH_scaffold_57p00040 Brassica napus HOM05D000580 ORTHO05D006815 6.4e-24 114.0 74 81.1
C06p23100 Brassica napus HOM05D000580 ORTHO05D006815 6.4e-24 114.0 74 81.1
BolSC29t60604H Brassica oleracea HOM05D000580 ORTHO05D006815 6.4e-24 114.0 74 81.1
BolSC35t60664H Brassica oleracea HOM05D000580 ORTHO05D006815 6.4e-24 114.0 74 81.1
BolSC35t60735H Brassica oleracea HOM05D000580 ORTHO05D006815 6.4e-24 114.0 74 81.1
BolSC46t61015H Brassica oleracea HOM05D000580 ORTHO05D006815 6.4e-24 114.0 74 81.1
BolSC47t61080H Brassica oleracea HOM05D000580 ORTHO05D006815 6.4e-24 114.0 74 81.1
BolSC49t61168H Brassica oleracea HOM05D000580 ORTHO05D006815 6.4e-24 114.0 74 81.1
BraA06t25380Z Brassica rapa HOM05D000580 ORTHO05D006815 6.4e-24 114.0 74 81.1
BraSC138t45558Z Brassica rapa HOM05D000580 ORTHO05D006815 6.4e-24 114.0 74 81.1
BraSC58t46498Z Brassica rapa HOM05D000580 ORTHO05D006815 6.4e-24 114.0 74 81.1
BraSC59t46576Z Brassica rapa HOM05D000580 ORTHO05D006815 6.4e-24 114.0 74 81.1
Carub.0006s2561 Capsella rubella HOM05D000580 ORTHO05D006815 6.4e-24 114.0 74 81.1
LjContig00319g0006223 Lotus japonicus HOM05D000580 ORTHO05D006815 6.4e-24 114.0 74 78.4
LjContig00319g0024255 Lotus japonicus HOM05D000580 ORTHO05D006815 6.4e-24 114.0 74 78.4
Gohir.A09G103100 Gossypium hirsutum HOM05D000580 ORTHO05D006815 8.4e-24 113.6 74 79.7
Sed0004233 Sechium edule HOM05D000580 ORTHO05D006815 8.4e-24 113.6 74 79.7
Sed0008111 Sechium edule HOM05D000580 ORTHO05D006815 8.4e-24 113.6 74 79.7
Sed0015899 Sechium edule HOM05D000580 ORTHO05D006815 8.4e-24 113.6 74 79.7
Eucgr.F03245 Eucalyptus grandis HOM05D000580 ORTHO05D006815 1.1e-23 113.2 74 81.1
Lsat_1_v5_gn_5_67060 Lactuca sativa HOM05D000580 ORTHO05D006815 1.4e-23 112.8 74 79.7
PSO548G0006 Papaver somniferum HOM05D000580 ORTHO05D006815 1.4e-23 112.8 74 81.1
AL2G20610 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 1.9e-23 112.5 74 79.7
AL2G21660 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 1.9e-23 112.5 74 79.7
ATCG00710 Arabidopsis thaliana HOM05D000580 ORTHO05D006815 1.9e-23 112.5 74 79.7
CARHR282200 Cardamine hirsuta HOM05D000580 ORTHO05D006815 1.9e-23 112.5 74 79.7
Gohir.A12G228900 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.9e-23 112.5 74 79.7
CAN.G29.17 Capsicum annuum HOM05D000580 ORTHO05D006815 2.4e-23 112.1 79 75.9
Gohir.A02G100500 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.4e-23 112.1 74 78.4
Gohir.D04G149675 Gossypium hirsutum HOM05D000580 ORTHO05D006815 5.5e-23 110.9 70 80.0
Duzib026G0003 Durio zibethinus HOM05D000580 ORTHO05D001362 9.3e-23 110.2 78 71.8
Duzib124G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 9.3e-23 110.2 78 71.8
Duzib237G0002 Durio zibethinus HOM05D000580 ORTHO05D001362 9.3e-23 110.2 78 71.8
Duzib252G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 9.3e-23 110.2 78 71.8
Duzib256G0004 Durio zibethinus HOM05D000580 ORTHO05D001362 9.3e-23 110.2 78 71.8
DCAR_032514 Daucus carota HOM05D000580 ORTHO05D006815 1.2e-22 109.8 74 77.0
Eucgr.B01572 Eucalyptus grandis HOM05D000580 ORTHO05D006815 1.2e-22 109.8 69 84.1
CAN.G2018.9 Capsicum annuum HOM05D000580 ORTHO05D006815 1.6e-22 109.4 74 79.7
C06p22890 Brassica napus HOM05D000580 ORTHO05D006815 2.1e-22 109.0 74 78.4
BolC2t08916H Brassica oleracea HOM05D000580 ORTHO05D006815 2.7e-22 108.6 70 80.0
Gohir.A01G128325 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.7e-22 108.6 74 77.0
Migut.H01967 Erythranthe guttata HOM05D000580 ORTHO05D006815 3.5e-22 108.2 66 83.3
Gorai.005G164900 Gossypium raimondii HOM05D000580 ORTHO05D006815 4.6e-22 107.8 74 77.0
Gohir.A13G110000 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.0e-22 107.5 74 75.7
RcHm_v2.0_CPg0501961 Rosa chinensis HOM05D000580 ORTHO05D006815 6.0e-22 107.5 75 80.0
Gohir.D09G103600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.3e-21 106.3 74 74.3
CARHR292710 Cardamine hirsuta HOM05D000580 ORTHO05D006815 1.8e-21 105.9 74 75.7
Medtr2g062930 Medicago truncatula HOM05D000580 ORTHO05D006815 2.3e-21 105.5 66 80.3
Gohir.A05G286600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.0e-21 105.1 74 77.0
Gohir.A05G326916 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.9e-21 104.8 74 75.7
Lalb_Chr23g0274371 Lupinus albus HOM05D000580 ORTHO05D006815 5.1e-21 104.4 75 74.7
Glyma.03G065000 Glycine max HOM05D000580 ORTHO05D006815 6.7e-21 104.0 74 74.3
Gohir.A05G301450 Gossypium hirsutum HOM05D000580 ORTHO05D006815 8.7e-21 103.6 74 74.3
Potri.002G174001 Populus trichocarpa HOM05D000580 ORTHO05D006815 8.7e-21 103.6 72 76.4
RcHm_v2.0_Chr6g0260481 Rosa chinensis HOM05D000580 ORTHO05D006815 8.7e-21 103.6 75 77.3
Gohir.D02G147200 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.1e-20 103.2 74 73.0
Nitab4.5_0004376g0090 Nicotiana tabacum HOM05D000580 ORTHO05D006815 1.1e-20 103.2 59 83.1
RcHm_v2.0_Chr4g0390611 Rosa chinensis HOM05D000580 ORTHO05D006815 1.1e-20 103.2 75 77.3
Gohir.A09G103075 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.5e-20 102.8 69 78.3
Gorai.008G286600 Gossypium raimondii HOM05D000580 ORTHO05D006815 1.5e-20 102.8 74 73.0
CAN.G648.1 Capsicum annuum HOM05D000580 ORTHO05D006815 2.5e-20 102.1 79 69.6
Hma1.2p1_0149F.1_g066500 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 4.3e-20 101.3 74 71.6
Hund08570 Selenicereus undatus HOM05D000580 ORTHO05D006815 7.4e-20 100.5 72 73.6
Gohir.D02G096801 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.6e-19 99.4 67 74.6
Gorai.005G110300 Gossypium raimondii HOM05D000580 ORTHO05D006815 2.8e-19 98.6 67 74.6
Nitab4.5_0010531g0030 Nicotiana tabacum HOM05D000580 ORTHO05D006815 3.7e-19 98.2 74 73.0
Prupe.7G021700 Prunus persica HOM05D000580 ORTHO05D006815 6.2e-19 97.4 75 73.3
Sed0008946 Sechium edule HOM05D000580 ORTHO05D006815 3.1e-18 95.1 74 73.0
EL10Ac1g01194 Beta vulgaris HOM05D000580 ORTHO05D001362 6.9e-18 94.0 63 77.8
C07p15330 Brassica napus HOM05D000580 ORTHO05D006815 6.9e-18 94.0 65 72.3
Psat6g181560 Pisum sativum HOM05D000580 ORTHO05D001785 6.9e-18 94.0 98 55.1
HanXRQChr01g0020261 Helianthus annuus HOM05D000580 ORTHO05D001785 1.5e-17 92.8 56 78.6
HanXRQChr07g0193501 Helianthus annuus HOM05D000580 ORTHO05D006815 1.5e-17 92.8 57 77.2
HanXRQChr10g0299321 Helianthus annuus HOM05D000580 ORTHO05D001785 1.5e-17 92.8 56 78.6
HanXRQChr11g0326921 Helianthus annuus HOM05D000580 ORTHO05D001785 1.5e-17 92.8 56 78.6
Glyma.17G186400 Glycine max HOM05D000580 ORTHO05D006815 2.6e-17 92.0 58 77.6
Hund10713 Selenicereus undatus HOM05D000580 ORTHO05D001362 4.5e-17 91.3 78 65.4
Gohir.A10G070250 Gossypium hirsutum HOM05D000580 ORTHO05D006815 5.8e-17 90.9 55 80.0
Peaxi162Scf00299g10016 Petunia axillaris HOM05D000580 ORTHO05D006815 5.8e-17 90.9 61 77.0
HanXRQChr02g0052541 Helianthus annuus HOM05D000580 ORTHO05D001785 7.6e-17 90.5 56 76.8
Solyc00g500026.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 7.6e-17 90.5 51 86.3
Solyc00g500072.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 7.6e-17 90.5 51 86.3
Medtr4g051375 Medicago truncatula HOM05D000580 ORTHO05D006815 1.1e-15 86.7 51 80.4
Lsat_1_v5_gn_5_50340 Lactuca sativa HOM05D000580 ORTHO05D006815 1.4e-15 86.3 56 76.8
Peaxi162Scf00527g00037 Petunia axillaris HOM05D000580 ORTHO05D006815 1.4e-15 86.3 51 84.3
Psat0s7142g0160 Pisum sativum HOM05D000580 ORTHO05D001785 1.4e-15 86.3 77 62.3
SabraPtG0004100 Salix brachista HOM05D000580 ORTHO05D001785 5.5e-15 84.3 64 67.2
SabraMtG0010300 Salix brachista HOM05D000580 ORTHO05D006815 7.1e-15 84.0 63 68.3
Psat0s1446g0280 Pisum sativum HOM05D000580 ORTHO05D001785 1.6e-14 82.8 51 76.5
Psat7g045200 Pisum sativum HOM05D000580 ORTHO05D006815 1.6e-14 82.8 61 67.2
Ah.10g027190 Amaranthus hybridus HOM05D000580 ORTHO05D001785 1.3e-13 79.7 51 76.5
Ah.10g027480 Amaranthus hybridus HOM05D000580 ORTHO05D001785 1.3e-13 79.7 51 76.5
Ah.10g028960 Amaranthus hybridus HOM05D000580 ORTHO05D001785 3.9e-13 78.2 51 74.5
MELO3C033895.2 Cucumis melo HOM05D000580 ORTHO05D006815 8.7e-13 77.0 74 59.5
Ah.10g027360 Amaranthus hybridus HOM05D000580 ORTHO05D006815 1.9e-12 75.9 54 72.2
Sp5g12490 Schrenkiella parvula HOM05D000580 ORTHO05D006815 4.3e-12 74.7 45 77.8
Sc07g0006580 Simmondsia chinensis HOM05D000580 ORTHO05D006815 4.3e-12 74.7 53 67.9
Solyc11g006675.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 4.3e-12 74.7 62 61.3
Glyma.05G092100 Glycine max HOM05D000580 ORTHO05D006815 7.4e-12 73.9 42 81.0
SMO086G0029 Selaginella moellendorffii HOM05D000580 ORTHO05D006815 7.4e-12 73.9 76 52.6
Lalb_Chr01g0009811 Lupinus albus HOM05D000580 ORTHO05D006815 9.7e-12 73.6 41 85.4
LjContig00318g0018353 Lotus japonicus HOM05D000580 ORTHO05D001785 6.3e-11 70.9 43 74.4
MD04G1032200 Malus domestica HOM05D000580 ORTHO05D006815 9.0e-10 67.0 60 55.0
BolSC29t60484H Brassica oleracea HOM05D000580 ORTHO05D006815 4.5e-09 64.7 40 75.0
Migut.L00683 Erythranthe guttata HOM05D000580 ORTHO05D006815 5.0e-08 61.2 46 60.9
ClCG02G007580 Citrullus lanatus HOM05D000580 ORTHO05D006815 2.5e-07 58.9 36 77.8
BolSC46t61022H Brassica oleracea HOM05D000580 ORTHO05D006815 4.2e-07 58.2 37 73.0
QL93p1043_0018 Quercus lobata HOM05D000580 ORTHO05D001785 4.2e-07 58.2 35 80.0
RcHm_v2.0_Chr2g0140191 Rosa chinensis HOM05D000580 ORTHO05D006815 2.7e-06 55.5 43 65.1


User provided reference genes

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