Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.1e-259 899.4 471 100.0
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 2.3e-223 778.9 439 93.6
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 3.0e-223 778.5 439 93.4
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 1.5e-222 776.2 439 93.4
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 1.5e-222 776.2 439 93.4
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 5.4e-217 757.7 438 92.0
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 8.1e-213 743.8 446 87.9
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 6.6e-207 724.2 435 86.0
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.9e-206 722.6 437 85.8
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 1.9e-206 722.6 436 86.0
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.9e-206 722.6 438 84.9
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 4.3e-206 721.5 439 89.1
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 7.3e-206 720.7 437 84.7
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.2e-205 719.9 438 85.4
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 2.1e-205 719.2 438 84.2
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 3.6e-205 718.4 436 84.6
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 3.6e-205 718.4 437 85.1
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 4.7e-205 718.0 435 85.7
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 8.1e-205 717.2 438 84.0
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.1e-204 716.8 436 84.9
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.1e-204 716.8 435 84.6
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.4e-204 716.5 437 84.7
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 1.4e-204 716.5 435 84.8
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.8e-204 716.1 435 84.4
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 1.8e-204 716.1 438 84.2
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 2.4e-204 715.7 436 84.6
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 2.4e-204 715.7 436 84.2
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 3.1e-204 715.3 436 85.3
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 3.1e-204 715.3 437 85.6
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 5.2e-204 714.5 435 84.8
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 5.2e-204 714.5 435 84.6
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 6.8e-204 714.1 435 84.8
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 8.9e-204 713.8 438 83.8
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.0e-203 712.6 444 83.6
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 2.6e-203 712.2 438 84.5
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 2.6e-203 712.2 438 84.7
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 2.6e-203 712.2 437 84.7
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 2.6e-203 712.2 436 83.7
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 3.4e-203 711.8 436 84.2
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 4.4e-203 711.4 435 84.4
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 9.9e-203 710.3 438 83.3
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 1.3e-202 709.9 437 84.2
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 2.2e-202 709.1 438 84.0
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 2.2e-202 709.1 436 83.3
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 3.8e-202 708.4 437 83.5
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 3.8e-202 708.4 437 83.8
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 3.8e-202 708.4 435 83.7
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 4.9e-202 708.0 436 83.3
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 4.9e-202 708.0 437 83.5
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 4.9e-202 708.0 436 84.2
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 4.9e-202 708.0 437 84.7
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 4.9e-202 708.0 437 84.4
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 6.4e-202 707.6 438 82.9
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 6.4e-202 707.6 447 81.4
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 8.4e-202 707.2 435 83.9
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 1.1e-201 706.8 437 83.5
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 1.1e-201 706.8 440 82.5
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 1.4e-201 706.4 436 83.5
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 1.4e-201 706.4 436 83.9
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 1.4e-201 706.4 437 83.3
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 2.4e-201 705.7 438 82.4
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 2.4e-201 705.7 436 82.8
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 3.2e-201 705.3 437 83.1
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 4.1e-201 704.9 437 83.5
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 7.1e-201 704.1 437 83.8
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 7.1e-201 704.1 436 83.7
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 9.2e-201 703.7 438 83.3
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 9.2e-201 703.7 436 83.7
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 1.6e-200 703.0 437 83.8
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 2.1e-200 702.6 437 83.3
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 2.7e-200 702.2 437 83.1
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 2.7e-200 702.2 436 83.9
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 3.5e-200 701.8 437 83.1
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 4.6e-200 701.4 437 83.1
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 4.6e-200 701.4 436 82.6
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 4.6e-200 701.4 438 83.1
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 7.8e-200 700.7 437 83.1
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 1.0e-199 700.3 437 83.1
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 1.0e-199 700.3 437 83.1
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 1.0e-199 700.3 437 83.1
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 1.0e-199 700.3 468 79.5
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 1.3e-199 699.9 437 82.6
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 1.3e-199 699.9 438 82.4
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 1.3e-199 699.9 437 82.8
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 1.7e-199 699.5 435 83.0
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 1.7e-199 699.5 436 82.3
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 1.7e-199 699.5 436 83.0
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 5.1e-199 698.0 437 82.8
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 5.1e-199 698.0 436 82.8
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 5.1e-199 698.0 436 82.3
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 6.6e-199 697.6 437 82.6
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 6.6e-199 697.6 437 82.6
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 6.6e-199 697.6 453 80.1
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 6.6e-199 697.6 438 82.4
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 6.6e-199 697.6 455 81.1
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 8.7e-199 697.2 437 82.6
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 8.7e-199 697.2 436 82.6
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 8.7e-199 697.2 438 81.7
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 1.1e-198 696.8 436 81.9
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.5e-198 696.4 441 84.1
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 1.5e-198 696.4 439 82.2
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 1.9e-198 696.0 436 82.3
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 1.9e-198 696.0 436 81.9
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 1.9e-198 696.0 436 81.9
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 2.5e-198 695.7 488 76.2
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 2.5e-198 695.7 488 76.2
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 2.5e-198 695.7 436 81.4
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 2.5e-198 695.7 436 81.2
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 9.6e-198 693.7 438 82.2
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 3.6e-197 691.8 447 81.0
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 3.6e-197 691.8 436 81.4
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 4.7e-197 691.4 437 83.8
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 8.1e-197 690.6 436 81.9
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 1.4e-196 689.9 436 82.6
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 6.9e-196 687.6 436 81.0
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 2.6e-195 685.6 439 81.3
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 3.4e-195 685.3 465 78.9
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.4e-193 679.9 438 81.3
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 1.1e-190 670.2 441 78.5
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 4.8e-189 664.8 438 79.7
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 2.0e-187 659.4 405 84.4
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 3.4e-187 658.7 519 69.7
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.9e-185 652.9 488 73.2
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 2.7e-184 649.0 391 85.4
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.6e-181 639.8 433 78.3
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 2.0e-179 632.9 402 81.8
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 3.8e-178 628.6 380 85.0
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 4.9e-178 628.2 395 81.0
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 4.2e-177 625.2 390 82.1
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 2.1e-176 622.9 415 76.9
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 1.1e-172 610.5 423 74.2
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 8.4e-170 600.9 436 73.6
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 7.9e-168 594.3 433 71.1
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 2.4e-164 582.8 417 70.5
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 4.6e-160 568.5 351 82.9
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 3.0e-159 565.8 425 72.0
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 4.2e-153 545.4 326 86.8
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 1.3e-146 523.9 440 63.4
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 2.2e-146 523.1 413 64.6
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 3.9e-143 512.3 416 64.7
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 2.7e-136 489.6 475 60.0
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 2.2e-133 479.9 295 85.4
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 3.2e-129 466.1 301 78.7
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 1.1e-121 441.0 409 62.8
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 1.5e-121 440.7 277 82.7
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 8.6e-114 414.8 258 84.1
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 3.5e-107 392.9 231 83.5
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.5e-105 387.5 225 85.8
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 9.9e-94 348.2 222 81.5
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.1e-91 340.5 261 68.2
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 1.1e-79 301.6 305 57.7
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 4.9e-69 266.2 310 47.4
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 1.8e-66 257.7 224 62.1
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 2.6e-62 243.8 164 76.2
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 2.3e-58 230.7 187 61.0
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 6.1e-51 206.1 134 74.6
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 9.7e-49 198.7 177 65.0
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 5.0e-45 186.4 112 89.3
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 7.9e-43 179.1 119 71.4
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.8e-39 167.9 150 65.3
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 8.5e-37 159.1 189 44.4
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 1.1e-36 158.7 157 61.1
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 1.4e-36 158.3 108 75.0
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 1.4e-36 158.3 157 60.5
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 3.6e-27 127.1 82 74.4
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 3.9e-26 123.6 178 36.0
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 4.5e-22 110.2 149 47.0
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 5.9e-22 109.8 73 75.3
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 9.1e-15 85.9 100 51.0
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 4.5e-14 83.6 51 84.3
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 7.7e-14 82.8 48 93.8
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 2.1e-11 74.7 40 95.0
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 5.2e-10 70.1 113 38.9
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 1.2e-09 68.9 111 38.7
Haze_26311 Corylus avellana HOM05D002944 ORTHO05D003377 4.4e-09 67.0 386 26.9
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 2.2e-08 64.7 37 81.1
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 4.9e-08 63.5 63 50.8


User provided reference genes

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