Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 3.9e-204 714.5 352 100.0
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 4.0e-164 581.6 345 83.5
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 4.5e-160 568.2 344 82.8
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 7.7e-160 567.4 331 84.6
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 2.4e-153 545.8 332 82.2
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 9.8e-131 470.7 291 75.9
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 2.2e-130 469.5 247 90.3
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 2.1e-125 453.0 328 67.4
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 4.7e-125 451.8 328 66.5
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 6.2e-125 451.4 339 65.8
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.4e-124 450.3 328 66.2
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 4.0e-124 448.7 318 67.0
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 5.2e-124 448.4 283 74.6
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 8.9e-124 447.6 297 70.7
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 1.5e-123 446.8 326 67.8
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 2.6e-123 446.0 308 69.5
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 5.8e-123 444.9 286 72.4
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 4.9e-122 441.8 316 69.0
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 4.9e-122 441.8 308 68.5
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 4.9e-122 441.8 286 71.0
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 4.9e-122 441.8 289 71.6
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 4.9e-122 441.8 333 65.2
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 6.4e-122 441.4 308 68.8
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 1.1e-121 440.7 288 71.2
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.6e-120 436.8 290 71.7
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 2.7e-120 436.0 341 63.0
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 6.0e-120 434.9 283 70.3
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 7.8e-120 434.5 341 64.5
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.1e-118 430.6 321 64.5
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 2.5e-118 429.5 332 64.2
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 4.3e-118 428.7 302 67.5
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 4.3e-118 428.7 298 67.4
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 5.6e-118 428.3 324 64.2
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 5.6e-118 428.3 360 59.7
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 1.6e-117 426.8 298 67.4
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 6.2e-117 424.9 291 68.7
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 8.1e-117 424.5 304 67.8
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 5.2e-116 421.8 285 68.8
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 4.4e-115 418.7 284 69.7
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 6.4e-114 414.8 303 68.0
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.9e-113 413.3 255 74.5
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 7.1e-113 411.4 333 62.5
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 7.1e-113 411.4 331 62.8
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 1.2e-112 410.6 291 66.3
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.7e-111 406.8 286 66.4
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 2.3e-111 406.4 280 68.2
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 3.9e-111 405.6 335 59.1
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 5.1e-111 405.2 283 66.4
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 5.1e-111 405.2 280 67.5
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 5.1e-111 405.2 280 67.5
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 3.3e-110 402.5 318 62.9
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 4.3e-110 402.1 280 67.5
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 1.6e-109 400.2 284 65.5
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 3.6e-109 399.1 293 63.8
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 3.6e-109 399.1 247 75.3
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 1.8e-108 396.7 279 67.0
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 6.9e-108 394.8 250 72.8
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 3.4e-107 392.5 283 64.3
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 7.6e-107 391.3 248 75.0
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 7.6e-107 391.3 282 64.2
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 1.3e-106 390.6 334 59.6
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 3.2e-105 386.0 294 60.2
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 1.6e-104 383.6 302 63.6
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 2.7e-104 382.9 255 69.0
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 3.5e-104 382.5 294 60.9
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 1.3e-103 380.6 294 60.9
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 3.0e-103 379.4 262 66.4
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 6.6e-103 378.3 294 60.2
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 8.7e-103 377.9 320 57.5
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 1.1e-102 377.5 283 61.5
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.9e-102 376.7 341 55.1
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 4.3e-102 375.6 302 59.3
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 5.6e-102 375.2 283 61.8
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 5.6e-102 375.2 292 60.3
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 9.6e-102 374.4 331 57.7
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 1.3e-101 374.0 217 78.3
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 2.1e-101 373.2 348 54.0
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 4.8e-101 372.1 319 56.7
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 6.2e-101 371.7 333 55.3
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 8.1e-101 371.3 294 58.5
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 1.2e-99 367.5 280 61.4
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 7.6e-99 364.8 246 68.7
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 1.9e-97 360.1 246 67.1
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 7.9e-96 354.8 218 84.4
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 1.8e-92 343.6 264 60.6
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 9.0e-92 341.3 269 59.9
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.5e-91 340.5 283 58.0
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.7e-90 337.0 326 53.1
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 1.4e-89 334.0 229 69.4
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.9e-89 333.6 283 56.5
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 8.7e-87 324.7 319 51.7
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 8.7e-87 324.7 295 55.6
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.4e-84 317.4 196 74.0
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 1.8e-84 317.0 213 69.5
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.5e-83 313.9 157 94.9
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 8.4e-82 308.1 278 50.4
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 5.5e-81 305.4 187 75.4
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 7.2e-81 305.1 283 54.1
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 7.2e-81 305.1 291 53.6
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 3.9e-79 299.3 279 49.8
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 7.4e-78 295.0 286 51.4
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 6.3e-77 292.0 559 34.3
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 2.0e-75 287.0 265 51.3
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 7.7e-75 285.0 289 47.1
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.9e-74 283.1 189 67.2
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.0e-71 274.6 297 48.1
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 3.3e-70 269.6 161 75.8
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 1.8e-63 247.3 153 72.5
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 2.0e-59 233.8 166 66.9
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 1.9e-57 227.3 240 50.4
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.5e-57 226.9 240 52.1
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 4.2e-57 226.1 171 63.7
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.6e-56 224.2 239 51.0
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 5.2e-55 219.2 174 62.1
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.8e-47 194.1 232 48.3
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 8.3e-45 185.3 195 51.8
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 5.4e-44 182.6 215 39.1
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 9.1e-44 181.8 127 64.6
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 3.6e-40 169.9 148 57.4
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 3.6e-40 169.9 111 71.2
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 4.1e-36 156.4 127 60.6
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 2.7e-35 153.7 301 33.2
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 1.7e-34 151.0 128 57.0
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 2.1e-32 144.1 100 68.0
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 3.0e-31 140.2 100 67.0
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.6e-27 127.9 73 75.3
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 1.0e-26 125.2 100 62.0
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.3e-21 108.2 76 64.5
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.3e-21 108.2 67 71.6
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 2.7e-19 100.5 155 41.3
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 3.3e-17 93.6 111 53.2
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.1e-15 87.0 85 54.1
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 1.3e-10 71.6 76 52.6


User provided reference genes

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