Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000670g0060 Nicotiana tabacum HOM05D004834 ORTHO05D006247 3.5e-129 464.9 228 100.0
Nitab4.5_0000117g0020 Nicotiana tabacum HOM05D004834 ORTHO05D006247 3.0e-112 408.7 240 86.2
Sopen11g020840 Solanum pennellii HOM05D004834 ORTHO05D006247 3.1e-93 345.5 244 75.8
Solyc11g045370.1 Solanum lycopersicum HOM05D004834 ORTHO05D006247 4.5e-92 341.7 244 75.4
PGSC0003DMG403008663 Solanum tuberosum HOM05D004834 ORTHO05D006247 1.0e-91 340.5 244 75.4
Peaxi162Scf00210g00225 Petunia axillaris HOM05D004834 ORTHO05D006247 2.7e-81 305.8 238 70.6
Hma1.2p1_0304F.1_g119280 Hydrangea macrophylla HOM05D004834 ORTHO05D006247 7.4e-79 297.7 239 65.3
Dinv11906 Davidia involucrata HOM05D004834 ORTHO05D006247 9.7e-79 297.4 241 64.7
CSS0012663 Camellia sinensis var. sinensis HOM05D004834 ORTHO05D006247 2.8e-78 295.8 241 63.5
CSS0029343 Camellia sinensis var. sinensis HOM05D004834 ORTHO05D006247 1.2e-76 290.4 241 62.2
Gohir.D09G128200 Gossypium hirsutum HOM05D004834 ORTHO05D006247 1.5e-76 290.0 245 63.7
GSVIVG01022507001 Vitis vinifera HOM05D004834 ORTHO05D006247 2.6e-76 289.3 241 63.5
Prupe.7G088900 Prunus persica HOM05D004834 ORTHO05D006247 4.5e-76 288.5 238 65.5
COL.COLO4_29472 Corchorus olitorius HOM05D004834 ORTHO05D006247 1.7e-75 286.6 248 62.9
Prupe.7G088800 Prunus persica HOM05D004834 ORTHO05D006247 1.7e-75 286.6 237 65.4
Gohir.A09G131900 Gossypium hirsutum HOM05D004834 ORTHO05D006247 2.9e-75 285.8 245 63.3
Gorai.006G146800 Gossypium raimondii HOM05D004834 ORTHO05D006247 2.5e-74 282.7 243 63.4
Nn2g14430 Nelumbo nucifera HOM05D004834 ORTHO05D006247 4.2e-74 282.0 244 63.5
SalBow1G1939 Salvia bowleyana HOM05D004834 ORTHO05D006247 4.2e-74 282.0 246 61.8
Cpa.g.sc222.7 Carica papaya HOM05D004834 ORTHO05D006247 9.4e-74 280.8 257 58.4
DCAR_013465 Daucus carota HOM05D004834 ORTHO05D006247 2.1e-73 279.6 244 62.3
QL07p026110 Quercus lobata HOM05D004834 ORTHO05D006247 2.1e-73 279.6 246 61.8
Haze_20096 Corylus avellana HOM05D004834 ORTHO05D006247 2.7e-73 279.3 244 62.7
Lsat_1_v5_gn_2_102000 Lactuca sativa HOM05D004834 ORTHO05D006247 7.9e-73 277.7 247 61.1
SGA_v2.0_scaffold112G31558 Striga asiatica HOM05D004834 ORTHO05D006247 7.9e-73 277.7 244 61.1
Thecc.05G183400 Theobroma cacao HOM05D004834 ORTHO05D006247 7.9e-73 277.7 247 61.1
Rhsim03G0058100 Rhododendron simsii HOM05D004834 ORTHO05D006247 1.4e-72 276.9 262 58.8
Ciclev10011373m.g Citrus clementina HOM05D004834 ORTHO05D006247 1.8e-72 276.6 244 61.1
Migut.J00722 Erythranthe guttata HOM05D004834 ORTHO05D006247 1.8e-72 276.6 245 62.0
vmacro07522 Vaccinium macrocarpon HOM05D004834 ORTHO05D006247 1.8e-72 276.6 265 57.7
TAR636G2709 Trochodendron aralioides HOM05D004834 ORTHO05D006247 2.3e-72 276.2 242 61.6
CiPaw.09G024600 Carya illinoinensis HOM05D004834 ORTHO05D006247 3.9e-72 275.4 241 60.6
arahy.Tifrunner.gnm1.ann1.5D1JVS Arachis hypogaea HOM05D004834 ORTHO05D006247 1.1e-71 273.9 242 61.2
Phvul.001G199000 Phaseolus vulgaris HOM05D004834 ORTHO05D006247 1.5e-71 273.5 235 62.1
CANSAT64G0017 Cannabis sativa HOM05D004834 ORTHO05D006247 4.3e-71 271.9 246 61.8
ECA238G0502 Erigeron canadensis HOM05D004834 ORTHO05D006247 4.3e-71 271.9 247 58.7
Manes.09G041400 Manihot esculenta HOM05D004834 ORTHO05D006247 5.7e-71 271.6 236 59.7
TWI53G0913 Tripterygium wilfordii HOM05D004834 ORTHO05D006247 7.4e-71 271.2 241 62.2
Atru.chr8.1261 Acer truncatum HOM05D004834 ORTHO05D006247 9.7e-71 270.8 241 61.0
arahy.Tifrunner.gnm1.ann1.5D1K5R Arachis hypogaea HOM05D004834 ORTHO05D006247 1.3e-70 270.4 242 61.2
Eucgr.A02536 Eucalyptus grandis HOM05D004834 ORTHO05D006247 1.3e-70 270.4 249 59.0
HanXRQChr14g0453201 Helianthus annuus HOM05D004834 ORTHO05D006247 1.3e-70 270.4 241 60.2
Lj1g0003379 Lotus japonicus HOM05D004834 ORTHO05D006247 2.2e-70 269.6 239 59.8
Aqoxy1G00576 Aquilegia oxysepala HOM05D004834 ORTHO05D006247 6.3e-70 268.1 248 61.3
Glyma.03G205500 Glycine max HOM05D004834 ORTHO05D006247 6.3e-70 268.1 236 60.2
Lalb_Chr20g0111191 Lupinus albus HOM05D004834 ORTHO05D006247 6.3e-70 268.1 234 60.7
VMungo1383G2386 Vigna mungo HOM05D004834 ORTHO05D006247 8.2e-70 267.7 235 61.3
CANSAT64G2176 Cannabis sativa HOM05D004834 ORTHO05D006247 1.4e-69 266.9 244 60.2
MD12G1046700 Malus domestica HOM05D004834 ORTHO05D006247 1.4e-69 266.9 237 60.8
MD12G1046600 Malus domestica HOM05D004834 ORTHO05D006247 2.4e-69 266.2 180 71.7
RcHm_v2.0_Chr3g0477531 Rosa chinensis HOM05D004834 ORTHO05D006247 5.3e-69 265.0 236 60.6
PSO384G0426 Papaver somniferum HOM05D004834 ORTHO05D006247 6.9e-69 264.6 249 58.6
PGSC0003DMG401008663 Solanum tuberosum HOM05D004834 ORTHO05D006247 1.2e-68 263.8 206 71.8
MSTRG.19322 Avicennia marina HOM05D004834 ORTHO05D006247 2.0e-68 263.1 246 56.9
PSO339G5030 Papaver somniferum HOM05D004834 ORTHO05D006247 7.7e-68 261.2 249 57.8
MBI11_g39498_MAGBIO Magnolia biondii HOM05D004834 ORTHO05D006247 1.7e-67 260.0 238 60.9
Psat3g026160 Pisum sativum HOM05D004834 ORTHO05D006247 2.2e-67 259.6 193 65.8
ATR0697G015 Amborella trichopoda HOM05D004834 ORTHO05D006247 2.9e-67 259.2 238 58.0
Cc06_g07030 Coffea canephora HOM05D004834 ORTHO05D006247 2.9e-67 259.2 245 58.0
TAR633G1355 Trochodendron aralioides HOM05D004834 ORTHO05D006247 5.0e-67 258.5 241 57.7
Aa31sc167G60 Aethionema arabicum HOM05D004834 ORTHO05D006247 6.5e-67 258.1 243 58.0
Ca_09087_v3 Cicer arietinum L. HOM05D004834 ORTHO05D006247 8.5e-67 257.7 242 56.6
TPR.G14400 Trifolium pratense HOM05D004834 ORTHO05D006247 8.5e-67 257.7 234 58.5
Medtr7g107050 Medicago truncatula HOM05D004834 ORTHO05D006247 1.1e-66 257.3 192 65.6
Potri.016G064800 Populus trichocarpa HOM05D004834 ORTHO05D006247 1.1e-66 257.3 243 58.0
Actinidia03850 Actinidia chinensis HOM05D004834 ORTHO05D006247 1.9e-66 256.5 135 86.7
AUR62038413 Chenopodium quinoa HOM05D004834 ORTHO05D006247 3.2e-66 255.8 242 57.0
Sabra16G0066600 Salix brachista HOM05D004834 ORTHO05D006247 7.2e-66 254.6 242 58.3
THA.LOC104799266 Tarenaya hassleriana HOM05D004834 ORTHO05D006247 2.7e-65 252.7 246 56.1
Rhsim03G0058000 Rhododendron simsii HOM05D004834 ORTHO05D006247 3.6e-65 252.3 242 59.1
MELO3C009581.2 Cucumis melo HOM05D004834 ORTHO05D006247 6.1e-65 251.5 251 56.2
EL10Ac5g11795 Beta vulgaris HOM05D004834 ORTHO05D006247 7.9e-65 251.1 237 55.3
vmacro07523 Vaccinium macrocarpon HOM05D004834 ORTHO05D006247 1.4e-64 250.4 136 83.1
Ah.02g115150 Amaranthus hybridus HOM05D004834 ORTHO05D006247 5.1e-64 248.4 136 83.1
Sc01g0005240 Simmondsia chinensis HOM05D004834 ORTHO05D006247 6.7e-64 248.1 235 53.6
unitig_26.g9147 Utricularia gibba HOM05D004834 ORTHO05D006247 6.7e-64 248.1 248 54.4
FvH4_6g21120 Fragaria vesca HOM05D004834 ORTHO05D006247 8.8e-64 247.7 234 59.0
Sed0002421 Sechium edule HOM05D004834 ORTHO05D006247 1.5e-63 246.9 239 55.6
BraA10t45020Z Brassica rapa HOM05D004834 ORTHO05D006247 2.0e-63 246.5 243 55.1
Carub.0006s0546 Capsella rubella HOM05D004834 ORTHO05D006247 2.0e-63 246.5 190 64.2
CARHR206620 Cardamine hirsuta HOM05D004834 ORTHO05D006247 2.0e-63 246.5 245 55.9
C09p70190 Brassica napus HOM05D004834 ORTHO05D006247 5.7e-63 245.0 241 56.0
A10p29810 Brassica napus HOM05D004834 ORTHO05D006247 7.4e-63 244.6 242 55.0
AL6G16670 Arabidopsis lyrata HOM05D004834 ORTHO05D006247 9.7e-63 244.2 136 80.9
AT5G06580 Arabidopsis thaliana HOM05D004834 ORTHO05D006247 9.7e-63 244.2 190 62.6
FAN02G4310 Fragaria x ananassa HOM05D004834 ORTHO05D006247 1.7e-62 243.4 177 67.8
Thhalv10013121m.g Eutrema salsugineum HOM05D004834 ORTHO05D006247 2.2e-62 243.0 244 54.9
FAN05G2138 Fragaria x ananassa HOM05D004834 ORTHO05D006247 3.7e-62 242.3 136 80.1
FAN05G4019 Fragaria x ananassa HOM05D004834 ORTHO05D006247 3.7e-62 242.3 136 80.1
FAN14G4987 Fragaria x ananassa HOM05D004834 ORTHO05D006247 3.7e-62 242.3 136 80.1
Sp6g36280 Schrenkiella parvula HOM05D004834 ORTHO05D006247 4.8e-62 241.9 241 53.9
BolC9t59763H Brassica oleracea HOM05D004834 ORTHO05D006247 8.2e-62 241.1 244 55.3
Oeu035654.3 Olea europaea HOM05D004834 ORTHO05D006247 2.4e-61 239.6 136 77.2
AUR62036303 Chenopodium quinoa HOM05D004834 ORTHO05D006247 3.1e-61 239.2 275 50.2
HPP92_012150 Vanilla planifolia HOM05D004834 ORTHO05D006247 3.1e-61 239.2 245 55.9
CAN.G409.3 Capsicum annuum HOM05D004834 ORTHO05D006247 4.1e-61 238.8 117 94.0
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 1.3e-59 233.8 136 77.9
vmacro07525 Vaccinium macrocarpon HOM05D004834 ORTHO05D006247 3.2e-58 229.2 158 69.0
Os07g0163000 Oryza sativa ssp. japonica HOM05D004834 ORTHO05D006247 6.1e-57 224.9 135 71.9
Cfa020095 Carpinus fangiana HOM05D004834 ORTHO05D006247 1.8e-56 223.4 115 87.0
CsaV3_3G038380 Cucumis sativus L. HOM05D004834 ORTHO05D006247 5.2e-56 221.9 117 85.5
Oeu063072.1 Olea europaea HOM05D004834 ORTHO05D006247 8.8e-56 221.1 117 83.8
Hund10783 Selenicereus undatus HOM05D004834 ORTHO05D006247 7.0e-53 211.5 130 76.2
AagrBONN_evm.TU.Sc2ySwM_228.4653 Anthoceros agrestis HOM05D004834 ORTHO05D006247 2.1e-49 199.9 206 49.5
Mapoly0056s0055 Marchantia polymorpha HOM05D004834 ORTHO05D006247 1.6e-44 183.7 157 57.3
Pp3c24_4090 Physcomitrium patens HOM05D004834 ORTHO05D006247 1.3e-43 180.6 144 55.6
CBR_g48275 Chara braunii HOM05D004834 ORTHO05D006247 1.0e-40 171.0 135 58.5
Pp3c20_18170 Physcomitrium patens HOM05D004834 ORTHO05D006247 2.0e-39 166.8 167 49.1
QL07p026067 Quercus lobata HOM05D004834 ORTHO05D006247 2.6e-39 166.4 85 85.9
Gorai.005G132900 Gossypium raimondii HOM05D004834 ORTHO05D006247 1.8e-32 143.7 175 46.9
Dinv25086 Davidia involucrata HOM05D004834 ORTHO05D006247 5.9e-28 128.6 153 49.7
Thhalv10014980m.g Eutrema salsugineum HOM05D004834 ORTHO05D006247 5.0e-27 125.6 108 58.3
Cre10.g434900 Chlamydomonas reinhardtii HOM05D004834 ORTHO05D006247 5.2e-24 115.5 113 49.6
Cfa024396 Carpinus fangiana HOM05D001072 ORTHO05D006247 1.5e-23 114.0 122 44.3
QL07p026057 Quercus lobata HOM05D004834 ORTHO05D006247 1.5e-23 114.0 170 43.5
Cfa026190 Carpinus fangiana HOM05D004834 ORTHO05D006247 9.2e-21 104.8 93 47.3
Duzib093G1706 Durio zibethinus HOM05D004834 ORTHO05D006247 1.6e-17 94.0 219 35.2
Glyma.19G202951 Glycine max HOM05D004834 ORTHO05D006247 8.9e-16 88.2 49 73.5
MCO11G780 Micromonas commoda HOM05D004834 ORTHO05D006247 2.2e-14 83.6 99 44.4
Gohir.D02G080666 Gossypium hirsutum HOM05D004834 ORTHO05D006247 2.9e-14 83.2 40 90.0
Gohir.D05G379301 Gossypium hirsutum HOM05D004834 ORTHO05D006247 2.9e-14 83.2 40 90.0
Gohir.D10G063250 Gossypium hirsutum HOM05D004834 ORTHO05D006247 2.9e-14 83.2 40 90.0
Gorai.012G042400 Gossypium raimondii HOM05D004834 ORTHO05D006247 2.9e-14 83.2 40 90.0
Gohir.A11G062601 Gossypium hirsutum HOM05D004834 ORTHO05D006247 6.4e-14 82.0 40 90.0
PRCOL_00003029 Prasinoderma coloniale HOM05D004834 ORTHO05D006247 3.9e-11 72.8 93 37.6
Hund16459 Selenicereus undatus HOM05D005272 ORTHO05D006890 1.8e-08 63.9 135 28.1
PGSC0003DMG402008663 Solanum tuberosum HOM05D004834 ORTHO05D006247 3.1e-08 63.2 29 93.1
CARHR244730 Cardamine hirsuta HOM05D005272 ORTHO05D006890 5.2e-08 62.4 112 30.4
AUR62007628 Chenopodium quinoa HOM05D005272 ORTHO05D006890 6.8e-08 62.0 135 29.6
RcHm_v2.0_Chr2g0100131 Rosa chinensis HOM05D005272 ORTHO05D006890 6.8e-08 62.0 127 29.9
Aa31LG6G13200 Aethionema arabicum HOM05D005272 ORTHO05D006890 8.9e-08 61.6 127 29.1
COL.COLO4_00765 Corchorus olitorius HOM05D004834 ORTHO05D160040 8.9e-08 61.6 119 33.6
FAN23G1388 Fragaria x ananassa HOM05D005272 ORTHO05D006890 1.2e-07 61.2 127 28.3
THA.LOC104807474 Tarenaya hassleriana HOM05D005272 ORTHO05D006890 1.2e-07 61.2 112 31.2
Ah.03g141530 Amaranthus hybridus HOM05D005272 ORTHO05D006890 2.6e-07 60.1 135 29.6
TWI60G1562 Tripterygium wilfordii HOM05D005272 ORTHO05D006890 2.6e-07 60.1 127 29.1
FAN28G0729 Fragaria x ananassa HOM05D005272 ORTHO05D006890 3.4e-07 59.7 127 28.3
MELO3C016408.2 Cucumis melo HOM05D005272 ORTHO05D006890 4.4e-07 59.3 127 28.3
CsaV3_4G005410 Cucumis sativus L. HOM05D005272 ORTHO05D006890 4.4e-07 59.3 127 28.3
MD15G1251700 Malus domestica HOM05D005272 ORTHO05D006890 4.4e-07 59.3 127 29.1
Sed0020582 Sechium edule HOM05D005272 ORTHO05D006890 4.4e-07 59.3 127 27.6
EL10As8g23880 Beta vulgaris HOM05D005272 ORTHO05D006890 5.8e-07 58.9 136 30.9
C07p61680 Brassica napus HOM05D005272 ORTHO05D006890 5.8e-07 58.9 132 27.3
AUR62004113 Chenopodium quinoa HOM05D005272 ORTHO05D006890 5.8e-07 58.9 218 27.1
FAN26G2090 Fragaria x ananassa HOM05D005272 ORTHO05D006890 5.8e-07 58.9 119 30.3
Sabra07G0015700 Salix brachista HOM05D005272 ORTHO05D006890 5.8e-07 58.9 119 31.1
FvH4_1g12310 Fragaria vesca HOM05D005272 ORTHO05D006890 7.6e-07 58.5 127 27.6
Sc03g0003260 Simmondsia chinensis HOM05D005272 ORTHO05D006890 7.6e-07 58.5 127 26.8
A03p64220 Brassica napus HOM05D005272 ORTHO05D006890 9.9e-07 58.2 112 29.5
BraA03t15492Z Brassica rapa HOM05D005272 ORTHO05D006890 9.9e-07 58.2 112 29.5
ClCG07G008770 Citrullus lanatus HOM05D005272 ORTHO05D006890 1.3e-06 57.8 90 34.4
Potri.007G018600 Populus trichocarpa HOM05D005272 ORTHO05D006890 1.3e-06 57.8 119 31.1
Thhalv10024815m.g Eutrema salsugineum HOM05D005272 ORTHO05D006890 1.7e-06 57.4 112 29.5
Sp7g34060 Schrenkiella parvula HOM05D005272 ORTHO05D006890 1.7e-06 57.4 112 30.4
CDE07G0649 Ceratophyllum demersum HOM05D005272 ORTHO05D006890 2.2e-06 57.0 90 33.3
Haze_03835 Corylus avellana HOM05D005272 ORTHO05D006890 2.9e-06 56.6 127 26.8
HPP92_017497 Vanilla planifolia HOM05D005272 ORTHO05D006890 2.9e-06 56.6 117 25.6
HPP92_017514 Vanilla planifolia HOM05D005272 ORTHO05D006890 2.9e-06 56.6 117 25.6
TAR381G0099 Trochodendron aralioides HOM05D005272 ORTHO05D006890 3.7e-06 56.2 127 28.3
Carub.0007s0391 Capsella rubella HOM05D005272 ORTHO05D006890 4.9e-06 55.8 127 27.6
AL7G14690 Arabidopsis lyrata HOM05D005272 ORTHO05D006890 6.4e-06 55.5 112 28.6


User provided reference genes

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