Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 7.1e-130 467.6 300 100.0
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 8.7e-104 380.9 291 79.4
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 9.1e-93 344.4 331 76.1
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.8e-41 173.3 137 72.3
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 5.2e-32 142.5 116 64.7
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 5.2e-32 142.5 177 50.8
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.5e-31 141.0 177 50.3
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 3.4e-31 139.8 99 70.7
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 3.8e-30 136.3 118 61.0
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 3.8e-30 136.3 178 48.9
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 3.8e-30 136.3 177 49.7
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 3.8e-30 136.3 135 55.6
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 4.9e-30 136.0 112 62.5
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 6.4e-30 135.6 178 47.8
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 1.1e-29 134.8 118 60.2
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 5.4e-29 132.5 176 47.7
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 1.6e-28 131.0 126 55.6
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 1.6e-28 131.0 151 49.7
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 6.0e-28 129.0 162 46.9
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 6.0e-28 129.0 147 51.7
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 7.8e-28 128.6 119 52.9
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.7e-27 127.5 154 48.1
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 5.1e-27 125.9 145 48.3
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 5.1e-27 125.9 224 41.1
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 1.1e-26 124.8 169 43.8
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 2.5e-26 123.6 172 43.6
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 3.3e-26 123.2 173 43.9
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 4.3e-26 122.9 166 43.4
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 4.3e-26 122.9 166 44.6
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 4.3e-26 122.9 225 39.6
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 5.6e-26 122.5 152 46.7
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 5.6e-26 122.5 175 42.3
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 5.6e-26 122.5 174 43.7
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 5.6e-26 122.5 165 44.2
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 9.6e-26 121.7 152 45.4
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 9.6e-26 121.7 162 44.4
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.2e-25 121.3 152 46.7
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 2.1e-25 120.6 168 42.9
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.1e-25 120.6 166 44.0
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 2.1e-25 120.6 153 46.4
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 2.8e-25 120.2 174 42.5
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 4.7e-25 119.4 174 42.0
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 4.7e-25 119.4 212 40.1
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 4.7e-25 119.4 173 41.0
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 6.2e-25 119.0 183 41.5
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 6.2e-25 119.0 163 44.8
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 6.2e-25 119.0 132 49.2
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 1.4e-24 117.9 173 42.8
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.8e-24 117.5 150 46.7
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 2.4e-24 117.1 174 41.4
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 2.4e-24 117.1 109 55.0
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 2.4e-24 117.1 174 42.0
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 2.4e-24 117.1 222 38.3
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 3.1e-24 116.7 144 47.2
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 3.1e-24 116.7 225 38.7
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 3.1e-24 116.7 224 37.9
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.1e-24 116.7 175 41.1
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 3.1e-24 116.7 175 41.1
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 4.0e-24 116.3 178 41.6
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 4.0e-24 116.3 171 42.1
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 5.2e-24 115.9 171 41.5
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 5.2e-24 115.9 216 39.8
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 5.2e-24 115.9 179 41.9
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 6.9e-24 115.5 196 39.3
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 6.9e-24 115.5 171 41.5
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 1.2e-23 114.8 174 39.7
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 1.5e-23 114.4 166 41.6
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 2.0e-23 114.0 144 44.4
Nitab4.5_0005030g0010 Nicotiana tabacum HOM05D000234 ORTHO05D000335 2.0e-23 114.0 184 63.6
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 2.6e-23 113.6 164 41.5
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 2.6e-23 113.6 165 41.2
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 2.6e-23 113.6 169 41.4
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 3.4e-23 113.2 231 37.7
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 4.4e-23 112.8 173 39.3
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 4.4e-23 112.8 171 39.2
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 5.8e-23 112.5 228 36.4
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 5.8e-23 112.5 226 37.2
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 5.8e-23 112.5 224 36.2
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 7.6e-23 112.1 155 43.9
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 7.6e-23 112.1 173 39.3
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 7.6e-23 112.1 205 40.0
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 1.3e-22 111.3 174 37.9
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 1.7e-22 110.9 172 40.7
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.2e-22 110.5 126 50.8
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 2.2e-22 110.5 175 39.4
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 2.9e-22 110.2 216 38.4
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 4.9e-22 109.4 98 58.2
Nitab4.5_0002574g0060 Nicotiana tabacum HOM05D000234 ORTHO05D000335 1.4e-21 107.8 201 60.7
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 4.2e-21 106.3 168 40.5
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 7.1e-21 105.5 230 33.0
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 9.3e-21 105.1 113 50.4
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 9.3e-21 105.1 101 55.4
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 1.2e-20 104.8 166 39.2
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 3.5e-20 103.2 114 51.8
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 4.6e-20 102.8 113 49.6
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 6.0e-20 102.4 121 52.1
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 6.0e-20 102.4 147 43.5
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 6.0e-20 102.4 222 35.6
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 7.8e-20 102.1 223 35.0
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 7.8e-20 102.1 109 51.4
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 1.3e-19 101.3 171 37.4
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 1.7e-19 100.9 85 62.4
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 1.7e-19 100.9 229 36.2
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 3.0e-19 100.1 133 45.9
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.0e-19 100.1 224 35.3
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 3.0e-19 100.1 224 35.3
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 3.9e-19 99.8 147 42.9
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 5.1e-19 99.4 138 42.0
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 1.5e-18 97.8 161 37.9
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 1.9e-18 97.4 148 41.9
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 1.9e-18 97.4 225 34.2
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 2.5e-18 97.1 62 74.2
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.5e-18 97.1 227 34.4
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 4.3e-18 96.3 165 38.8
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 4.3e-18 96.3 147 40.8
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 9.6e-18 95.1 70 67.1
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 9.6e-18 95.1 70 67.1
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.3e-17 94.7 140 41.4
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.6e-17 93.2 62 69.4
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 4.8e-17 92.8 166 36.7
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 6.2e-17 92.4 226 31.4
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 1.1e-16 91.7 114 44.7
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.1e-16 91.7 159 37.1
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 5.3e-16 89.4 59 78.0
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 5.3e-16 89.4 103 47.6
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 9.0e-16 88.6 62 62.9
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 7.9e-12 75.5 100 39.0
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 7.9e-12 75.5 100 39.0
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 3.0e-11 73.6 62 51.6
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 4.3e-10 69.7 133 34.6
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 2.8e-09 67.0 58 55.2
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 2.8e-09 67.0 103 37.9
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 8.1e-09 65.5 39 74.4
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.4e-08 64.7 40 80.0
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 3.1e-08 63.5 39 71.8
PGSC0003DMG400021213 Solanum tuberosum HOM05D000234 ORTHO05D000335 1.5e-07 61.2 88 50.0
FAN07G1695 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.0e-07 60.8 46 65.2
Psat1g156000 Pisum sativum HOM05D001353 ORTHO05D005187 9.9e-07 58.5 46 65.2
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 2.9e-06 57.0 41 65.9
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 4.9e-06 56.2 103 36.9
SHI11059 Sapria himalayana HOM05D001353 ORTHO05D005187 6.4e-06 55.8 35 71.4
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 6.4e-06 55.8 40 72.5


User provided reference genes

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