Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 9.4e-148 527.3 373 100.0
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 2.4e-143 512.7 371 98.1
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 8.6e-125 451.1 372 85.8
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 1.6e-123 446.8 378 86.5
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 1.2e-118 430.6 342 89.8
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 3.3e-116 422.5 379 84.4
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 3.3e-116 422.5 369 82.7
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 8.0e-107 391.3 371 81.1
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 1.5e-97 360.5 362 78.7
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 3.4e-97 359.4 374 75.9
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 5.8e-97 358.6 362 78.2
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 1.3e-96 357.5 390 63.3
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 6.4e-96 355.1 374 74.1
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 8.3e-96 354.8 375 60.8
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 1.1e-95 354.4 374 75.9
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 1.9e-95 353.6 375 76.3
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 5.4e-95 352.1 373 73.2
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 7.1e-95 351.7 375 76.3
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 7.1e-95 351.7 375 76.0
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 1.2e-94 350.9 374 75.9
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 2.1e-94 350.1 375 60.8
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 3.5e-94 349.4 346 78.0
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 3.5e-94 349.4 375 68.5
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 4.6e-94 349.0 362 77.9
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 7.8e-94 348.2 376 75.0
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 2.3e-93 346.7 377 73.7
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 5.1e-93 345.5 343 76.1
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.9e-92 343.6 378 73.5
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.9e-92 343.6 378 73.5
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 2.5e-92 343.2 374 73.3
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 7.3e-92 341.7 377 76.1
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 9.5e-92 341.3 376 66.2
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 9.5e-92 341.3 371 74.1
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 2.8e-91 339.7 372 75.5
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 1.4e-90 337.4 373 74.8
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 1.8e-90 337.0 375 72.8
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 4.0e-90 335.9 373 74.8
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 6.8e-90 335.1 378 72.2
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 8.9e-90 334.7 373 76.7
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 1.2e-89 334.3 362 76.0
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 3.4e-89 332.8 374 72.2
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 3.4e-89 332.8 375 72.0
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 7.6e-89 331.6 374 62.6
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 7.6e-89 331.6 375 72.0
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 7.6e-89 331.6 373 73.7
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 2.9e-88 329.7 376 71.8
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 4.9e-88 328.9 373 75.9
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 4.9e-88 328.9 375 71.7
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 2.4e-87 326.6 379 73.9
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 3.2e-87 326.2 379 72.6
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 4.1e-87 325.9 374 73.8
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 5.4e-87 325.5 382 72.5
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 2.1e-86 323.6 383 71.0
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 2.1e-86 323.6 376 73.4
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 2.3e-85 320.1 368 74.5
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 2.5e-84 316.6 377 72.4
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 4.3e-84 315.8 373 71.3
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 5.6e-84 315.5 373 71.3
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 1.6e-83 313.9 363 71.9
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 3.6e-83 312.8 358 72.6
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 5.2e-82 308.9 340 75.0
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 3.4e-81 306.2 396 67.2
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 5.8e-81 305.4 375 70.9
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 1.3e-80 304.3 385 68.8
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 4.9e-80 302.4 374 71.4
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 1.3e-77 294.3 374 69.3
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 3.0e-77 293.1 335 76.7
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 3.0e-77 293.1 388 68.0
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 1.1e-76 291.2 167 89.2
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 7.3e-76 288.5 348 76.1
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 6.2e-75 285.4 360 68.9
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 8.1e-75 285.0 375 70.1
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 9.0e-74 281.6 383 67.6
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 5.8e-73 278.9 389 65.0
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 9.9e-73 278.1 360 68.3
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 3.8e-72 276.2 368 67.1
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 1.1e-71 274.6 371 66.0
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 1.9e-71 273.9 383 64.2
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 1.9e-71 273.9 383 64.2
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 1.9e-71 273.9 383 64.2
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 3.2e-71 273.1 365 67.1
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 4.2e-71 272.7 375 66.9
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 4.2e-71 272.7 383 64.2
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 5.4e-71 272.3 494 38.7
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 1.2e-70 271.2 366 67.2
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 1.2e-70 271.2 366 69.4
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 6.0e-70 268.9 366 66.4
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 7.9e-70 268.5 365 67.4
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 1.1e-68 264.6 370 67.0
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.5e-68 264.2 327 61.8
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 2.5e-68 263.5 376 65.4
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 2.5e-68 263.5 369 46.3
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 9.6e-68 261.5 331 70.4
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.3e-67 261.2 375 64.5
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 1.8e-66 257.3 373 64.6
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 2.4e-66 256.9 370 62.7
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 4.0e-66 256.1 382 62.8
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 6.9e-66 255.4 384 64.1
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 9.0e-66 255.0 184 81.0
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 1.2e-65 254.6 278 78.4
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 1.5e-65 254.2 334 70.4
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 1.1e-63 248.1 387 53.2
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 9.3e-63 245.0 321 71.0
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 1.2e-62 244.6 384 51.8
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 3.5e-62 243.0 302 73.5
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 9.0e-58 228.4 303 73.3
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 1.5e-57 227.6 372 63.7
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 5.8e-57 225.7 370 61.9
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 1.9e-55 220.7 271 72.7
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 4.3e-52 209.5 325 66.8
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 1.2e-49 201.4 182 64.3
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 6.5e-48 195.7 305 65.2
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 1.2e-46 191.4 356 59.8
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 1.6e-46 191.0 357 59.9
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 9.7e-44 181.8 182 58.8
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 1.7e-43 181.0 132 86.4
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 1.8e-42 177.6 356 57.6
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 3.4e-41 173.3 132 78.8
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 2.2e-40 170.6 310 61.6
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 2.2e-40 170.6 377 52.3
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 1.4e-39 167.9 356 54.2
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 9.4e-39 165.2 132 75.8
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 2.7e-38 163.7 165 61.2
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 5.3e-34 149.4 297 58.9
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 1.5e-33 147.9 301 58.1
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 6.3e-27 125.9 132 62.1
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 7.0e-26 122.5 115 66.1
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 2.9e-24 117.1 356 49.7
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 3.6e-22 110.2 95 62.1
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 8.0e-22 109.0 243 60.1
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 1.4e-21 108.2 293 53.2
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 2.0e-20 104.4 391 46.0
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 6.3e-19 99.4 226 55.3
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 2.7e-14 84.0 101 54.5
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 2.3e-13 80.9 55 83.6
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 1.2e-12 78.6 55 81.8
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 1.3e-11 75.1 84 70.2


User provided reference genes

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