Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 5.4e-128 461.1 243 100.0
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.8e-115 419.5 243 92.6
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 6.6e-110 401.0 243 86.8
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 7.3e-109 397.5 242 86.8
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.1e-107 393.7 243 86.4
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 1.8e-107 392.9 243 86.0
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.4e-107 392.5 243 86.4
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 6.4e-105 384.4 243 82.3
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 1.2e-103 380.2 243 83.5
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 4.6e-103 378.3 243 82.3
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 7.8e-103 377.5 243 81.9
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.0e-102 375.6 243 80.7
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.8e-100 369.0 242 81.4
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 8.1e-100 367.5 242 79.8
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 1.5e-98 363.2 238 80.3
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 3.8e-97 358.6 243 79.0
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 3.8e-97 358.6 244 75.4
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.4e-96 356.7 243 78.2
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 1.4e-96 356.7 205 89.3
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 1.9e-96 356.3 243 79.0
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.9e-96 356.3 243 78.2
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 2.4e-96 355.9 206 87.9
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 7.1e-96 354.4 243 76.5
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 9.3e-96 354.0 245 76.3
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 4.6e-95 351.7 243 76.5
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 4.6e-95 351.7 243 76.1
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 7.8e-95 350.9 242 77.7
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 1.3e-94 350.1 247 74.9
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 3.0e-94 349.0 244 76.6
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 3.9e-94 348.6 243 75.7
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 3.9e-94 348.6 240 75.4
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 3.9e-94 348.6 243 76.1
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 6.6e-94 347.8 243 75.7
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 2.5e-93 345.9 242 74.4
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 3.3e-93 345.5 229 80.8
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 4.3e-93 345.1 242 76.9
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 5.6e-93 344.7 243 74.1
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 5.6e-93 344.7 243 74.1
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 7.3e-93 344.4 243 75.7
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.6e-92 343.2 243 75.7
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 2.1e-92 342.8 242 74.0
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 2.8e-92 342.4 243 74.1
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 2.8e-92 342.4 242 77.3
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 3.6e-92 342.0 243 75.3
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 4.8e-92 341.7 244 74.2
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 8.1e-92 340.9 244 74.6
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 8.1e-92 340.9 244 74.2
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 1.1e-91 340.5 209 82.3
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.8e-91 339.7 243 74.5
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 1.8e-91 339.7 243 76.1
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 1.8e-91 339.7 206 84.5
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.1e-91 339.0 244 74.2
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 6.9e-91 337.8 242 74.0
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 9.0e-91 337.4 242 73.1
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 9.0e-91 337.4 242 73.1
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.5e-90 336.7 244 73.8
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 2.0e-90 336.3 243 74.1
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 4.5e-90 335.1 243 74.1
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 4.5e-90 335.1 206 83.5
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 4.5e-90 335.1 243 74.1
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 5.8e-90 334.7 253 72.3
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.3e-89 333.6 229 78.6
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 1.7e-89 333.2 234 73.9
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 2.2e-89 332.8 240 72.5
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 2.2e-89 332.8 242 72.7
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 2.9e-89 332.4 199 85.4
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 2.9e-89 332.4 241 73.4
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 4.9e-89 331.6 243 72.4
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 6.4e-89 331.3 243 74.5
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 8.4e-89 330.9 207 81.2
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.4e-88 330.1 243 73.7
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 1.9e-88 329.7 242 71.5
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 1.9e-88 329.7 243 72.0
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 2.4e-88 329.3 242 72.3
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.2e-88 328.9 242 71.5
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 5.4e-88 328.2 242 72.3
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 1.2e-87 327.0 243 71.6
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 4.6e-87 325.1 243 72.8
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 6.0e-87 324.7 242 71.5
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 6.0e-87 324.7 242 71.5
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 6.0e-87 324.7 206 82.5
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 7.9e-87 324.3 243 71.6
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 7.9e-87 324.3 242 71.5
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 7.9e-87 324.3 243 73.3
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 2.3e-86 322.8 242 72.3
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 5.1e-86 321.6 243 71.2
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 6.7e-86 321.2 205 81.5
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.9e-85 319.7 242 69.8
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 1.9e-85 319.7 199 81.9
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 5.6e-85 318.2 244 69.3
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 5.6e-85 318.2 244 70.1
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 1.6e-84 316.6 243 71.6
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.6e-84 316.6 193 84.5
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 2.1e-84 316.2 242 69.8
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 4.8e-84 315.1 244 70.5
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 6.2e-84 314.7 244 70.1
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 1.8e-83 313.2 246 69.1
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 2.4e-83 312.8 196 82.7
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 2.4e-83 312.8 209 78.0
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 4.0e-83 312.0 243 67.1
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 9.0e-83 310.8 243 67.5
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 1.5e-82 310.1 211 80.6
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 3.4e-82 308.9 245 67.8
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 3.4e-82 308.9 229 71.2
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 7.6e-82 307.8 228 70.2
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 9.9e-82 307.4 245 67.8
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.3e-81 307.0 244 66.8
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 2.9e-81 305.8 244 67.2
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.4e-80 303.5 225 69.8
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 2.5e-80 302.8 243 65.0
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 3.2e-80 302.4 205 74.6
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 9.3e-80 300.8 245 66.1
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 1.2e-79 300.4 245 66.1
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 1.2e-79 300.4 245 66.9
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 3.9e-78 295.4 205 75.6
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 3.7e-76 288.9 216 69.4
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 3.7e-76 288.9 216 69.4
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 1.8e-75 286.6 216 69.0
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 1.8e-75 286.6 216 69.0
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 3.1e-75 285.8 183 78.7
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 9.0e-75 284.3 228 67.5
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 1.2e-74 283.9 241 64.3
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 1.9e-72 276.6 197 71.6
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 7.1e-72 274.6 178 76.4
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 1.0e-65 254.2 232 59.1
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 1.5e-61 240.4 216 63.4
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 6.3e-60 235.0 157 76.4
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 6.3e-60 235.0 245 56.7
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 6.9e-59 231.5 191 64.9
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 5.5e-56 221.9 171 71.9
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 2.1e-47 193.4 133 72.9
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 3.6e-47 192.6 243 51.4
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 2.8e-44 183.0 111 78.4
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 5.9e-42 175.3 176 54.0
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 4.0e-38 162.5 173 52.0
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 7.0e-35 151.8 105 70.5
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 5.5e-32 142.1 130 63.1
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 6.8e-30 135.2 188 42.6
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.2e-29 134.4 91 81.3
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 4.5e-26 122.5 86 67.4
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 5.7e-21 105.5 91 67.0
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 8.6e-17 91.7 183 31.1
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 1.4e-14 84.3 54 75.9
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 5.8e-13 79.0 218 29.8
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 9.2e-11 71.6 80 56.2
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 1.7e-09 67.4 83 49.4
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 4.3e-08 62.8 63 58.7
FAN23G2223 Fragaria x ananassa HOM05D001255 ORTHO05D006136 2.1e-07 60.5 55 61.8


User provided reference genes

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