Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000409g0100 Nicotiana tabacum HOM05D001473 ORTHO05D003934 1.7e-39 165.6 89 100.0
Nitab4.5_0009204g0020 Nicotiana tabacum HOM05D001473 ORTHO05D003934 5.2e-28 127.5 98 77.6
Cc02_g08900 Coffea canephora HOM05D001473 ORTHO05D003934 1.7e-18 95.9 114 61.4
CAN.G1609.5 Capsicum annuum HOM05D001473 ORTHO05D003934 6.3e-18 94.0 112 58.9
Solyc04g009950.3 Solanum lycopersicum HOM05D001473 ORTHO05D003934 6.3e-18 94.0 112 58.9
Sopen04g005080 Solanum pennellii HOM05D001473 ORTHO05D003934 6.3e-18 94.0 112 58.9
ECA233G2045 Erigeron canadensis HOM05D001473 ORTHO05D003934 8.3e-18 93.6 113 61.1
HanXRQChr08g0225461 Helianthus annuus HOM05D001473 ORTHO05D003934 8.3e-18 93.6 113 61.1
PGSC0003DMG400011500 Solanum tuberosum HOM05D001473 ORTHO05D003934 8.3e-18 93.6 112 58.0
SGA_v2.0_scaffold1G00525 Striga asiatica HOM05D001473 ORTHO05D003934 8.3e-18 93.6 112 58.0
AUR62000484 Chenopodium quinoa HOM05D001473 ORTHO05D003934 1.8e-17 92.4 114 59.6
unitig_0.g2788 Utricularia gibba HOM05D001473 ORTHO05D003934 1.8e-17 92.4 111 55.9
unitig_747.g21794 Utricularia gibba HOM05D001473 ORTHO05D003934 1.8e-17 92.4 111 55.9
Hund07267 Selenicereus undatus HOM05D001473 ORTHO05D003934 2.4e-17 92.0 114 59.6
CANSAT54G0715 Cannabis sativa HOM05D001473 ORTHO05D003934 3.1e-17 91.7 111 57.7
Glyma.10G165900 Glycine max HOM05D001473 ORTHO05D003934 3.1e-17 91.7 111 57.7
Glyma.20G223300 Glycine max HOM05D001473 ORTHO05D003934 3.1e-17 91.7 111 57.7
Oeu012234.1 Olea europaea HOM05D001473 ORTHO05D003934 3.1e-17 91.7 111 54.1
AUR62006826 Chenopodium quinoa HOM05D001473 ORTHO05D003934 4.1e-17 91.3 114 58.8
Dinv05754 Davidia involucrata HOM05D001473 ORTHO05D003934 4.1e-17 91.3 110 56.4
Lsat_1_v5_gn_8_2880 Lactuca sativa HOM05D001473 ORTHO05D003934 4.1e-17 91.3 113 60.2
EL10Ac4g09571 Beta vulgaris HOM05D001473 ORTHO05D003934 5.4e-17 90.9 114 58.8
Migut.F01544 Erythranthe guttata HOM05D001473 ORTHO05D003934 5.4e-17 90.9 112 56.2
Peaxi162Scf00135g00313 Petunia axillaris HOM05D001473 ORTHO05D003934 5.4e-17 90.9 114 58.8
Actinidia40002 Actinidia chinensis HOM05D001473 ORTHO05D003934 7.0e-17 90.5 114 58.8
ATR0736G172 Amborella trichopoda HOM05D001473 ORTHO05D003934 7.0e-17 90.5 113 60.2
DCAR_023095 Daucus carota HOM05D001473 ORTHO05D003934 7.0e-17 90.5 111 56.8
Manes.08G139000 Manihot esculenta HOM05D001473 ORTHO05D003934 7.0e-17 90.5 113 59.3
RcHm_v2.0_Chr3g0449801 Rosa chinensis HOM05D001473 ORTHO05D003934 7.0e-17 90.5 111 57.7
Duzib177G0283 Durio zibethinus HOM05D001473 ORTHO05D003934 9.1e-17 90.1 113 59.3
Migut.B01119 Erythranthe guttata HOM05D001473 ORTHO05D003934 9.1e-17 90.1 112 56.2
Gohir.A13G167900 Gossypium hirsutum HOM05D001473 ORTHO05D003934 9.1e-17 90.1 113 59.3
Gohir.D11G258300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 9.1e-17 90.1 113 59.3
Gohir.D13G173300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 9.1e-17 90.1 113 59.3
Gorai.007G276500 Gossypium raimondii HOM05D001473 ORTHO05D003934 9.1e-17 90.1 113 59.3
Gorai.013G187200 Gossypium raimondii HOM05D001473 ORTHO05D003934 9.1e-17 90.1 113 59.3
Lj5A229T67 Lonicera japonica HOM05D001473 ORTHO05D003934 9.1e-17 90.1 114 58.8
arahy.Tifrunner.gnm1.ann1.33TMW6 Arachis hypogaea HOM05D001473 ORTHO05D003934 1.2e-16 89.7 113 57.5
Ca_09455_v3 Cicer arietinum L. HOM05D001473 ORTHO05D003934 1.2e-16 89.7 113 58.4
COL.COLO4_15470 Corchorus olitorius HOM05D001473 ORTHO05D003934 1.2e-16 89.7 113 58.4
MD04G1229500 Malus domestica HOM05D001473 ORTHO05D003934 1.2e-16 89.7 113 58.4
MD12G1246400 Malus domestica HOM05D001473 ORTHO05D003934 1.2e-16 89.7 113 58.4
Phvul.004G090900 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 1.2e-16 89.7 113 58.4
Prupe.6G349400 Prunus persica HOM05D001473 ORTHO05D003934 1.2e-16 89.7 111 56.8
VMungo0464G0145 Vigna mungo HOM05D001473 ORTHO05D003934 1.2e-16 89.7 113 58.4
CSS0044349 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 1.6e-16 89.4 112 55.4
CiPaw.04G081100 Carya illinoinensis HOM05D001473 ORTHO05D003934 1.6e-16 89.4 111 56.8
AUR62023607 Chenopodium quinoa HOM05D001473 ORTHO05D003934 1.6e-16 89.4 114 57.9
Ciclev10018691m.g Citrus clementina HOM05D001473 ORTHO05D003934 1.6e-16 89.4 111 56.8
TAR362G0879 Trochodendron aralioides HOM05D001473 ORTHO05D003934 1.6e-16 89.4 112 55.4
CDE04G2649 Ceratophyllum demersum HOM05D001473 ORTHO05D003934 2.0e-16 89.0 110 56.4
Duzib128G0032 Durio zibethinus HOM05D001473 ORTHO05D003934 2.0e-16 89.0 113 58.4
SEGI_20641 Sequoiadendron giganteum HOM05D001473 ORTHO05D003934 2.0e-16 89.0 111 57.7
Aqoxy2G03659 Aquilegia oxysepala HOM05D001473 ORTHO05D003934 2.7e-16 88.6 111 56.8
CDE07G0773 Ceratophyllum demersum HOM05D001473 ORTHO05D003934 2.7e-16 88.6 110 52.7
Eucgr.B01570 Eucalyptus grandis HOM05D001473 ORTHO05D003934 2.7e-16 88.6 112 58.0
FvH4_6g01950 Fragaria vesca HOM05D001473 ORTHO05D003934 2.7e-16 88.6 111 56.8
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.7e-16 88.6 111 56.8
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.7e-16 88.6 111 56.8
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.7e-16 88.6 111 56.8
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.7e-16 88.6 111 56.8
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.7e-16 88.6 111 56.8
FAN14G3813 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.7e-16 88.6 111 56.8
Lj1g0012496 Lotus japonicus HOM05D001473 ORTHO05D003934 2.7e-16 88.6 113 57.5
PSO017G2945 Papaver somniferum HOM05D001473 ORTHO05D003934 2.7e-16 88.6 111 55.9
PSO063G2917 Papaver somniferum HOM05D001473 ORTHO05D003934 2.7e-16 88.6 111 55.9
Potri.013G046300 Populus trichocarpa HOM05D001473 ORTHO05D003934 2.7e-16 88.6 112 54.5
SalBow1G0011 Salvia bowleyana HOM05D001473 ORTHO05D003934 2.7e-16 88.6 111 52.3
TWI31G0266 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 2.7e-16 88.6 112 58.0
TWI79G0745 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 2.7e-16 88.6 112 58.0
Atru.chr2.968 Acer truncatum HOM05D001473 ORTHO05D003934 3.5e-16 88.2 114 57.9
Manes.09G148400 Manihot esculenta HOM05D001473 ORTHO05D003934 3.5e-16 88.2 113 57.5
Thecc.05G271600 Theobroma cacao HOM05D001473 ORTHO05D003934 3.5e-16 88.2 111 56.8
Duzib106G1036 Durio zibethinus HOM05D001473 ORTHO05D003934 4.5e-16 87.8 111 55.9
Potri.019G018400 Populus trichocarpa HOM05D001473 ORTHO05D003934 4.5e-16 87.8 112 57.1
SEGI_38835 Sequoiadendron giganteum HOM05D001473 ORTHO05D003934 4.5e-16 87.8 111 56.8
Sc08g0009190 Simmondsia chinensis HOM05D001473 ORTHO05D003934 4.5e-16 87.8 114 57.0
arahy.Tifrunner.gnm1.ann1.HJHY8E Arachis hypogaea HOM05D001473 ORTHO05D003934 5.9e-16 87.4 110 52.7
arahy.Tifrunner.gnm1.ann1.R6YD0H Arachis hypogaea HOM05D001473 ORTHO05D003934 5.9e-16 87.4 110 52.7
Cfa002922 Carpinus fangiana HOM05D001473 ORTHO05D003934 5.9e-16 87.4 113 57.5
ClCG06G009620 Citrullus lanatus HOM05D001473 ORTHO05D003934 5.9e-16 87.4 113 57.5
Haze_25281 Corylus avellana HOM05D001473 ORTHO05D003934 5.9e-16 87.4 113 57.5
Lalb_Chr18g0044021 Lupinus albus HOM05D001473 ORTHO05D003934 5.9e-16 87.4 113 56.6
Psat3g006920 Pisum sativum HOM05D001473 ORTHO05D003934 5.9e-16 87.4 113 56.6
arahy.Tifrunner.gnm1.ann1.8L6PVU Arachis hypogaea HOM05D001473 ORTHO05D003934 7.7e-16 87.0 113 56.6
MELO3C017522.2 Cucumis melo HOM05D001473 ORTHO05D003934 7.7e-16 87.0 113 56.6
CsaV3_1G045350 Cucumis sativus L. HOM05D001473 ORTHO05D003934 7.7e-16 87.0 113 56.6
CsaV3_UNG002030 Cucumis sativus L. HOM05D001473 ORTHO05D003934 7.7e-16 87.0 113 56.6
Sabra19G0028000 Salix brachista HOM05D001473 ORTHO05D003934 7.7e-16 87.0 112 52.7
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 7.7e-16 87.0 112 52.7
PGR031G3359 Punica granatum HOM05D001473 ORTHO05D003934 1.0e-15 86.7 110 53.6
Rhsim05G0175000 Rhododendron simsii HOM05D001473 ORTHO05D003934 1.0e-15 86.7 112 54.5
vmacro19999 Vaccinium macrocarpon HOM05D001473 ORTHO05D003934 1.0e-15 86.7 112 54.5
CSS0041231 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 1.3e-15 86.3 114 56.1
Cpa.g.sc306.1 Carica papaya HOM05D001473 ORTHO05D003934 1.3e-15 86.3 112 58.0
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 1.7e-15 85.9 113 56.6
Lalb_Chr15g0076051 Lupinus albus HOM05D001473 ORTHO05D003934 1.7e-15 85.9 113 54.9
Peaxi162Scf00304g00074 Petunia axillaris HOM05D001473 ORTHO05D003934 1.7e-15 85.9 114 54.4
Phvul.L001860 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 1.7e-15 85.9 112 56.2
TPR.G6939 Trifolium pratense HOM05D001473 ORTHO05D003934 1.7e-15 85.9 111 54.1
SHI00615 Sapria himalayana HOM05D001473 ORTHO05D003934 2.3e-15 85.5 113 56.6
AL1G20320 Arabidopsis lyrata HOM05D001473 ORTHO05D003934 2.9e-15 85.1 110 54.5
AT1G09770 Arabidopsis thaliana HOM05D001473 ORTHO05D003934 2.9e-15 85.1 110 54.5
Carub.0001s0911 Capsella rubella HOM05D001473 ORTHO05D003934 2.9e-15 85.1 110 54.5
CARHR009740 Cardamine hirsuta HOM05D001473 ORTHO05D003934 2.9e-15 85.1 110 54.5
Dinv18449 Davidia involucrata HOM05D001473 ORTHO05D003934 2.9e-15 85.1 112 53.6
Thhalv10006800m.g Eutrema salsugineum HOM05D001473 ORTHO05D003934 2.9e-15 85.1 110 54.5
Medtr7g115550 Medicago truncatula HOM05D001473 ORTHO05D003934 2.9e-15 85.1 111 53.2
Os04g0348300 Oryza sativa ssp. japonica HOM05D001473 ORTHO05D003934 2.9e-15 85.1 111 55.9
Sp1g08360 Schrenkiella parvula HOM05D001473 ORTHO05D003934 2.9e-15 85.1 110 54.5
Lj5g0018401 Lotus japonicus HOM05D001473 ORTHO05D003934 3.8e-15 84.7 113 54.9
QL03p030821 Quercus lobata HOM05D001473 ORTHO05D003934 3.8e-15 84.7 110 50.9
CSS0046947 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 5.0e-15 84.3 114 55.3
Sed0003092 Sechium edule HOM05D001473 ORTHO05D003934 6.6e-15 84.0 110 53.6
CSS0020922 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 8.6e-15 83.6 114 54.4
Medtr5g010470 Medicago truncatula HOM05D001473 ORTHO05D003934 8.6e-15 83.6 112 55.4
THA.LOC104823763 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 8.6e-15 83.6 111 53.2
HPP92_023254 Vanilla planifolia HOM05D001473 ORTHO05D003934 8.6e-15 83.6 112 52.7
HPP92_023313 Vanilla planifolia HOM05D001473 ORTHO05D003934 8.6e-15 83.6 112 52.7
Sc03g0006090 Simmondsia chinensis HOM05D001473 ORTHO05D003934 1.1e-14 83.2 113 54.9
Aa31LG1G5220 Aethionema arabicum HOM05D001473 ORTHO05D003934 1.5e-14 82.8 110 53.6
A06p06440 Brassica napus HOM05D001473 ORTHO05D003934 1.5e-14 82.8 110 52.7
C05p07840 Brassica napus HOM05D001473 ORTHO05D003934 1.5e-14 82.8 110 52.7
BolC5t29535H Brassica oleracea HOM05D001473 ORTHO05D003934 1.5e-14 82.8 110 52.7
BraA06t23855Z Brassica rapa HOM05D001473 ORTHO05D003934 1.5e-14 82.8 110 52.7
Mapoly0014s0195 Marchantia polymorpha HOM05D001473 ORTHO05D003934 1.5e-14 82.8 110 51.8
Zm00001eb142770 Zea mays HOM05D001473 ORTHO05D003934 1.5e-14 82.8 110 54.5
C08p13180 Brassica napus HOM05D001473 ORTHO05D003934 1.9e-14 82.4 110 52.7
BolC8t48947H Brassica oleracea HOM05D001473 ORTHO05D003934 1.9e-14 82.4 110 52.7
AagrBONN_evm.TU.Sc2ySwM_368.3249 Anthoceros agrestis HOM05D001473 ORTHO05D003934 3.3e-14 81.6 110 50.0
Pp3c3_17580 Physcomitrium patens HOM05D001473 ORTHO05D003934 3.3e-14 81.6 113 55.8
BraA08t35347Z Brassica rapa HOM05D001473 ORTHO05D003934 4.2e-14 81.3 110 52.7
RcHm_v2.0_Chr5g0032281 Rosa chinensis HOM05D001473 ORTHO05D003934 4.2e-14 81.3 117 53.0
GSVIVG01023527001 Vitis vinifera HOM05D001473 ORTHO05D003934 4.2e-14 81.3 92 58.7
A08p34350 Brassica napus HOM05D001473 ORTHO05D003934 5.5e-14 80.9 110 52.7
THA.LOC104805779 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 5.5e-14 80.9 110 53.6
Cre03.g197350 Chlamydomonas reinhardtii HOM05D001473 ORTHO05D003934 1.2e-13 79.7 113 52.2
SMO196G0202 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 1.2e-13 79.7 110 53.6
SMO234G0053 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 1.2e-13 79.7 110 53.6
SMO196G0272 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 8.0e-13 77.0 110 51.8
DCAR_029377 Daucus carota HOM05D001473 ORTHO05D003934 1.0e-12 76.6 111 46.8
CBR_g39826 Chara braunii HOM05D001473 ORTHO05D003934 1.4e-12 76.3 113 51.3
Thhalv10001097m.g Eutrema salsugineum HOM05D001473 ORTHO05D003934 1.8e-12 75.9 112 52.7
Lsat_1_v5_gn_8_72320 Lactuca sativa HOM05D001473 ORTHO05D003934 3.4e-11 71.6 113 48.7
Gohir.A11G247950 Gossypium hirsutum HOM05D001473 ORTHO05D003934 4.4e-11 71.2 80 63.8
MCO01G097 Micromonas commoda HOM05D001473 ORTHO05D003934 7.5e-11 70.5 80 60.0
PRCOL_00004307 Prasinoderma coloniale HOM05D001473 ORTHO05D003934 7.5e-11 70.5 116 44.8
BcaC04g22223 Brassica carinata HOM05D001473 ORTHO05D003934 4.1e-09 64.7 89 50.6
C09p21880 Brassica napus HOM05D001473 ORTHO05D003934 4.1e-09 64.7 89 50.6
BolC9t55093H Brassica oleracea HOM05D001473 ORTHO05D003934 4.1e-09 64.7 89 50.6
A09p17580 Brassica napus HOM05D001473 ORTHO05D003934 5.4e-09 64.3 89 51.7
BraA09t37388Z Brassica rapa HOM05D001473 ORTHO05D003934 5.4e-09 64.3 89 51.7
BolC1t01331H Brassica oleracea HOM05D001473 ORTHO05D003934 7.0e-09 63.9 89 51.7
Cfa025479 Carpinus fangiana HOM05D001473 ORTHO05D003934 3.5e-08 61.6 54 68.5
Lsat_1_v5_gn_5_135881 Lactuca sativa HOM05D001473 ORTHO05D003934 3.5e-08 61.6 110 44.5
Haze_26225 Corylus avellana HOM05D001473 ORTHO05D003934 1.3e-07 59.7 71 59.2
Lsat_1_v5_gn_5_132420 Lactuca sativa HOM05D001473 ORTHO05D003934 4.3e-06 54.7 45 68.9
BcaB07g31211 Brassica carinata HOM05D001473 ORTHO05D003934 9.5e-06 53.5 89 47.2
BcaB08g37389 Brassica carinata HOM05D001473 ORTHO05D003934 9.5e-06 53.5 56 60.7


User provided reference genes

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