Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 2541.5 1267 100.0
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 2229.9 1382 84.1
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 2156.7 1273 85.0
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 2133.2 1273 83.7
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 2125.1 1273 83.3
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 2114.3 1274 82.9
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1717.6 1268 67.4
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1695.6 1274 66.2
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1695.6 1262 66.2
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1694.5 1261 66.1
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1687.5 1273 66.4
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1684.8 1276 65.0
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1657.1 1275 65.2
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1655.2 1270 64.6
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1636.3 1264 64.0
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1635.5 1261 63.8
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1621.7 1280 63.6
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1620.5 1268 64.2
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1610.1 1242 63.9
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1610.1 1265 63.2
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1608.2 1263 62.8
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1606.7 1262 62.3
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1604.3 1302 61.4
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1597.8 1254 63.2
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1597.0 1264 62.7
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1595.1 1263 62.9
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1594.7 1265 62.3
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1592.8 1270 62.8
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1592.0 1263 62.0
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1589.3 1263 61.9
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1588.9 1262 62.3
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1585.9 1249 62.4
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1585.5 1279 61.7
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1585.5 1271 61.8
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1584.3 1268 62.2
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1584.3 1268 62.2
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1583.9 1268 62.3
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1573.1 1268 61.6
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1572.0 1263 61.3
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1563.9 1268 61.7
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1556.2 1264 61.5
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1554.7 1259 61.5
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1553.9 1264 61.2
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1548.9 1263 61.0
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1542.7 1272 60.5
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1541.2 1231 61.8
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1538.5 1267 60.4
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1532.7 1263 60.6
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1531.5 1263 60.1
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1526.5 1266 59.6
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1525.4 1278 59.5
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1524.6 1265 59.1
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1524.2 1263 60.3
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1522.7 1289 59.0
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1521.9 1268 60.3
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1521.5 1267 59.7
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1519.2 1278 60.1
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1518.4 1266 59.0
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1517.7 1314 58.1
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1517.3 1267 59.4
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1516.9 1267 60.1
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1510.7 1265 59.9
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1505.0 1280 58.7
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1504.2 1341 58.3
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1501.1 1272 59.2
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1498.8 1263 59.1
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1496.9 1255 58.3
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1493.0 1269 59.0
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1489.9 1272 58.5
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1484.9 1272 57.9
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1482.2 1272 57.6
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1481.1 1379 55.5
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1478.0 1269 57.6
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1473.8 1328 56.5
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1473.4 1272 57.3
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1473.0 1274 57.3
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1472.2 1266 58.8
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1470.7 1266 57.2
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1468.8 1202 60.5
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1468.0 1264 58.3
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1464.9 1266 58.5
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1460.7 1273 57.0
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1456.0 1272 56.6
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1451.8 1273 56.8
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1449.1 1283 56.4
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1442.9 1297 55.8
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1438.7 1262 56.9
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1425.2 1311 55.5
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1422.5 1251 57.6
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1399.8 1086 63.5
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1394.8 1273 55.3
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1392.5 1083 63.6
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1389.0 1259 54.6
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1381.7 972 69.5
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1352.4 1268 53.9
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1342.8 1270 55.8
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1328.5 1276 52.1
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1289.6 1059 61.0
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1177.9 1261 51.1
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1161.7 1298 47.6
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1154.4 1278 47.0
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1151.3 1273 47.1
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1146.3 1270 49.2
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1097.8 1285 47.3
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1085.5 1261 44.3
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 5.0e-302 1041.6 856 62.4
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 2.8e-300 1035.8 905 57.3
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 1.4e-280 970.3 715 66.4
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 2.4e-267 926.4 711 63.3
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 1.7e-265 920.2 895 53.1
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 4.9e-249 865.5 1124 41.5
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 1.1e-237 827.8 1103 41.4
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 1.0e-217 761.5 1251 38.7
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 1.5e-216 757.7 752 53.5
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 1.5e-205 721.1 659 55.7
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 2.0e-197 694.1 565 61.9
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 8.0e-191 672.2 626 56.4
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 5.0e-177 626.3 565 57.0
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 6.2e-151 539.7 400 66.2
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 3.0e-145 520.8 412 63.3
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 8.4e-132 476.1 592 45.6
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 5.9e-125 453.4 712 38.1
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 2.9e-84 318.2 373 45.0
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 5.9e-77 293.9 331 46.8
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 1.4e-70 272.7 280 51.4
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 1.2e-66 259.6 304 46.7
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 8.0e-66 256.9 179 71.5
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 8.6e-60 236.9 308 43.8
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 6.4e-55 220.7 202 58.4
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 8.7e-44 183.7 140 66.4
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 6.2e-42 177.6 228 43.9
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 3.0e-28 132.1 135 51.9
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 8.7e-28 130.6 156 50.6
Nitab4.5_0001526g0010 Nicotiana tabacum HOM05D000261 ORTHO05D000566 1.3e-23 116.7 59 91.5
Nitab4.5_0010223g0010 Nicotiana tabacum HOM05D004254 ORTHO05D005184 1.1e-19 103.6 61 80.3
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 9.6e-19 100.5 94 60.6
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 4.8e-18 98.2 131 47.3
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 5.3e-17 94.7 75 57.3
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 1.7e-15 89.7 70 62.9
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 4.6e-13 81.6 65 64.6
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 5.7e-11 74.7 102 41.2
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 1.8e-09 69.7 128 30.5
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 4.5e-08 65.1 107 33.6
Actinidia06365 Actinidia chinensis HOM05D005254 ORTHO05D055108 2.9e-07 62.4 49 57.1
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 3.8e-07 62.0 58 55.2
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 1.1e-06 60.5 45 57.8


User provided reference genes

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