Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000288g0160 Nicotiana tabacum HOM05D001522 ORTHO05D282607 4.5e-112 407.9 202 100.0
Nitab4.5_0001990g0020 Nicotiana tabacum HOM05D002374 ORTHO05D004738 5.3e-20 102.1 109 55.0
Nitab4.5_0000001g0190 Nicotiana tabacum HOM05D002374 ORTHO05D286681 6.5e-18 95.1 111 49.5
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 1.0e-10 71.2 43 79.1
Nitab4.5_0003840g0040 Nicotiana tabacum HOM05D001522 ORTHO05D282289 5.5e-09 65.5 74 52.7
Lsat_1_v5_gn_5_89101 Lactuca sativa HOM05D001522 ORTHO05D001547 2.1e-08 63.5 57 57.9
arahy.Tifrunner.gnm1.ann1.0D5YER Arachis hypogaea HOM05D001522 ORTHO05D001547 6.1e-08 62.0 49 61.2
arahy.Tifrunner.gnm1.ann1.K35IEP Arachis hypogaea HOM05D001522 ORTHO05D001547 6.1e-08 62.0 49 61.2
ClCG02G014330 Citrullus lanatus HOM05D001522 ORTHO05D001547 6.1e-08 62.0 42 71.4
ECA234G2552 Erigeron canadensis HOM05D001522 ORTHO05D001547 6.1e-08 62.0 57 56.1
HanXRQChr10g0307601 Helianthus annuus HOM05D001522 ORTHO05D001547 6.1e-08 62.0 57 56.1
Nitab4.5_0000001g0180 Nicotiana tabacum HOM05D001522 ORTHO05D283506 6.1e-08 62.0 70 48.6
Nitab4.5_0003788g0030 Nicotiana tabacum HOM05D001522 ORTHO05D282577 6.1e-08 62.0 52 59.6
Nitab4.5_0003165g0020 Nicotiana tabacum HOM05D001522 ORTHO05D001547 7.9e-08 61.6 43 72.1
Nitab4.5_0006335g0010 Nicotiana tabacum HOM05D001522 ORTHO05D001547 7.9e-08 61.6 43 72.1
Peaxi162Scf01313g00241 Petunia axillaris HOM05D001522 ORTHO05D001547 7.9e-08 61.6 43 72.1
Sopen07g002060 Solanum pennellii HOM05D001522 ORTHO05D001547 7.9e-08 61.6 43 72.1
PGSC0003DMG400011152 Solanum tuberosum HOM05D001522 ORTHO05D001547 7.9e-08 61.6 43 72.1
Cfa020790 Carpinus fangiana HOM05D001522 ORTHO05D001547 1.0e-07 61.2 49 63.3
Haze_19147 Corylus avellana HOM05D001522 ORTHO05D001547 1.0e-07 61.2 49 63.3
FvH4_1g00590 Fragaria vesca HOM05D001522 ORTHO05D001547 1.0e-07 61.2 49 63.3
FAN26G2584 Fragaria x ananassa HOM05D001522 ORTHO05D001547 1.0e-07 61.2 49 63.3
FAN28G2531 Fragaria x ananassa HOM05D001522 ORTHO05D001547 1.0e-07 61.2 49 63.3
MD02G1004800 Malus domestica HOM05D001522 ORTHO05D001547 1.0e-07 61.2 49 63.3
Oeu027615.1 Olea europaea HOM05D001522 ORTHO05D001547 1.0e-07 61.2 43 72.1
Prupe.7G266200 Prunus persica HOM05D001522 ORTHO05D001547 1.0e-07 61.2 49 63.3
QL02p094089 Quercus lobata HOM05D001522 ORTHO05D001547 1.0e-07 61.2 49 63.3
RcHm_v2.0_Chr2g0085221 Rosa chinensis HOM05D001522 ORTHO05D001547 1.0e-07 61.2 49 63.3
MELO3C004118.2 Cucumis melo HOM05D001522 ORTHO05D001547 1.3e-07 60.8 49 63.3
Phvul.009G194600 Phaseolus vulgaris HOM05D001522 ORTHO05D001547 1.3e-07 60.8 43 69.8
AUR62025360 Chenopodium quinoa HOM05D001522 ORTHO05D001547 1.8e-07 60.5 40 72.5
AUR62028361 Chenopodium quinoa HOM05D001522 ORTHO05D001547 1.8e-07 60.5 40 72.5
Eucgr.C02511 Eucalyptus grandis HOM05D001522 ORTHO05D001547 1.8e-07 60.5 49 59.2
VMungo1215G3256 Vigna mungo HOM05D001522 ORTHO05D001547 1.8e-07 60.5 57 52.6
Migut.J01387 Erythranthe guttata HOM05D001522 ORTHO05D001547 2.3e-07 60.1 43 69.8
Lalb_Chr07g0179971 Lupinus albus HOM05D001522 ORTHO05D001547 2.3e-07 60.1 57 52.6
CsaV3_2G007670 Cucumis sativus L. HOM05D001522 ORTHO05D001547 3.0e-07 59.7 49 63.3
Thhalv10000030m.g Eutrema salsugineum HOM05D001522 ORTHO05D001547 3.0e-07 59.7 57 52.6
Glyma.17G071600 Glycine max HOM05D001522 ORTHO05D001547 3.0e-07 59.7 57 52.6
Hma1.2p1_0028F.1_g017740 Hydrangea macrophylla HOM05D001522 ORTHO05D001547 3.0e-07 59.7 49 63.3
Sabra18G0088800 Salix brachista HOM05D001522 ORTHO05D001547 3.0e-07 59.7 43 69.8
Sed0026316 Sechium edule HOM05D001522 ORTHO05D001547 3.0e-07 59.7 49 61.2
TWI32G0958 Tripterygium wilfordii HOM05D001522 ORTHO05D001547 3.0e-07 59.7 49 61.2
EL10Ac8g18917 Beta vulgaris HOM05D001522 ORTHO05D001547 3.9e-07 59.3 40 70.0
CAN.G1610.3 Capsicum annuum HOM05D001522 ORTHO05D001547 3.9e-07 59.3 43 69.8
MSTRG.19661 Avicennia marina HOM05D001522 ORTHO05D001547 5.1e-07 58.9 43 67.4
CiPaw.15G165000 Carya illinoinensis HOM05D001522 ORTHO05D001547 5.1e-07 58.9 49 59.2
Cc06_g14540 Coffea canephora HOM05D001522 ORTHO05D001547 5.1e-07 58.9 59 49.2
Lj9A721G58 Lonicera japonica HOM05D001522 ORTHO05D001547 5.1e-07 58.9 49 61.2
VMungo1309G1331 Vigna mungo HOM05D001522 ORTHO05D001547 5.1e-07 58.9 43 67.4
Cpa.g.sc46.194 Carica papaya HOM05D001522 ORTHO05D001547 6.7e-07 58.5 57 52.6
Sabra06G0138000 Salix brachista HOM05D001522 ORTHO05D001547 6.7e-07 58.5 43 69.8
Sc18g0003090 Simmondsia chinensis HOM05D001522 ORTHO05D001547 6.7e-07 58.5 40 67.5
BraA09t41048Z Brassica rapa HOM05D001522 ORTHO05D001547 8.7e-07 58.2 57 50.9
CANSAT11G0939 Cannabis sativa HOM05D001522 ORTHO05D001547 8.7e-07 58.2 57 52.6
Dinv42825 Davidia involucrata HOM05D001522 ORTHO05D001547 8.7e-07 58.2 57 54.4
Dinv43275 Davidia involucrata HOM05D001522 ORTHO05D001547 8.7e-07 58.2 57 54.4
Lalb_Chr08g0234211 Lupinus albus HOM05D001522 ORTHO05D001547 8.7e-07 58.2 43 67.4
Nn8g40030 Nelumbo nucifera HOM05D001522 ORTHO05D001547 8.7e-07 58.2 57 52.6
Aa31LG7G12650 Aethionema arabicum HOM05D001522 ORTHO05D001547 1.1e-06 57.8 57 50.9
DCAR_017922 Daucus carota HOM05D001522 ORTHO05D001547 1.1e-06 57.8 57 54.4
THA.LOC104803907 Tarenaya hassleriana HOM05D001522 ORTHO05D001547 1.1e-06 57.8 57 50.9
TAR625G1181 Trochodendron aralioides HOM05D001522 ORTHO05D001547 1.1e-06 57.8 43 67.4
Gohir.A05G008300 Gossypium hirsutum HOM05D001522 ORTHO05D001547 1.5e-06 57.4 43 67.4
Lj6g0023603 Lotus japonicus HOM05D001522 ORTHO05D001547 1.5e-06 57.4 43 65.1
Manes.14G112700 Manihot esculenta HOM05D001522 ORTHO05D001547 1.5e-06 57.4 40 70.0
Potri.006G181100 Populus trichocarpa HOM05D001522 ORTHO05D001547 1.5e-06 57.4 43 67.4
AL4G14220 Arabidopsis lyrata HOM05D001522 ORTHO05D001547 1.9e-06 57.0 57 49.1
AT2G24120 Arabidopsis thaliana HOM05D001522 ORTHO05D001547 1.9e-06 57.0 57 49.1
BcaC02g08496 Brassica carinata HOM05D001522 ORTHO05D001547 1.9e-06 57.0 57 49.1
BcaC07g40958 Brassica carinata HOM05D001522 ORTHO05D001547 1.9e-06 57.0 57 49.1
A04p18420 Brassica napus HOM05D001522 ORTHO05D001547 1.9e-06 57.0 57 49.1
C04p53700 Brassica napus HOM05D001522 ORTHO05D001547 1.9e-06 57.0 57 49.1
C08p39520 Brassica napus HOM05D001522 ORTHO05D001547 1.9e-06 57.0 57 49.1
BolC4t26925H Brassica oleracea HOM05D001522 ORTHO05D001547 1.9e-06 57.0 57 49.1
BolC8t51525H Brassica oleracea HOM05D001522 ORTHO05D001547 1.9e-06 57.0 57 49.1
BraA04t17454Z Brassica rapa HOM05D001522 ORTHO05D001547 1.9e-06 57.0 57 49.1
Carub.0004s0330 Capsella rubella HOM05D001522 ORTHO05D001547 1.9e-06 57.0 57 49.1
CARHR118200 Cardamine hirsuta HOM05D001522 ORTHO05D001547 1.9e-06 57.0 57 49.1
Glyma.04G155600 Glycine max HOM05D001522 ORTHO05D001547 1.9e-06 57.0 43 67.4
Gohir.D05G009100 Gossypium hirsutum HOM05D001522 ORTHO05D001547 1.9e-06 57.0 43 67.4
Gorai.009G009300 Gossypium raimondii HOM05D001522 ORTHO05D001547 1.9e-06 57.0 43 67.4
MBI15_g27200_MAGBIO Magnolia biondii HOM05D001522 ORTHO05D001547 1.9e-06 57.0 43 69.8
Potri.018G103300 Populus trichocarpa HOM05D001522 ORTHO05D001547 1.9e-06 57.0 43 67.4
SalBow1G2274 Salvia bowleyana HOM05D001522 ORTHO05D001547 1.9e-06 57.0 57 45.6
Sp4g03070 Schrenkiella parvula HOM05D001522 ORTHO05D001547 1.9e-06 57.0 57 49.1
unitig_37.g12750 Utricularia gibba HOM05D001522 ORTHO05D001547 1.9e-06 57.0 40 70.0
GSVIVG01023660001 Vitis vinifera HOM05D001522 ORTHO05D001547 1.9e-06 57.0 49 59.2
Ciclev10007333m.g Citrus clementina HOM05D001522 ORTHO05D001547 2.5e-06 56.6 57 52.6
Solyc07g005930.4 Solanum lycopersicum HOM05D001522 ORTHO05D001547 2.5e-06 56.6 37 73.0
Atru.chr7.4 Acer truncatum HOM05D001522 ORTHO05D001547 3.3e-06 56.2 49 59.2
PSO017G4257 Papaver somniferum HOM05D001522 ORTHO05D001547 3.3e-06 56.2 40 70.0
PSO170G0324 Papaver somniferum HOM05D001522 ORTHO05D001547 4.3e-06 55.8 40 70.0
PGR102G0971 Punica granatum HOM05D001522 ORTHO05D001547 5.7e-06 55.5 49 53.1
Aqoxy7G02391 Aquilegia oxysepala HOM05D001522 ORTHO05D001547 7.4e-06 55.1 43 65.1
Duzib168G2155 Durio zibethinus HOM05D001522 ORTHO05D001547 7.4e-06 55.1 43 62.8
Glyma.02G206401 Glycine max HOM05D001522 ORTHO05D001547 7.4e-06 55.1 57 50.9
Glyma.06G217400 Glycine max HOM05D001522 ORTHO05D001547 7.4e-06 55.1 43 62.8
Nitab4.5_0007773g0020 Nicotiana tabacum HOM05D001739 ORTHO05D004575 7.4e-06 55.1 65 44.6
Thecc.09G153200 Theobroma cacao HOM05D001522 ORTHO05D001547 9.7e-06 54.7 43 62.8
vmacro13057 Vaccinium macrocarpon HOM05D001522 ORTHO05D001547 9.7e-06 54.7 49 53.1


User provided reference genes

Program Settings