Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000244g0320 Nicotiana tabacum HOM05D000306 ORTHO05D005993 0.0e+00 1716.0 860 100.0
Sopen07g002910 Solanum pennellii HOM05D000306 ORTHO05D005993 0.0e+00 1429.8 879 82.7
Solyc07g006810.3 Solanum lycopersicum HOM05D000306 ORTHO05D005993 0.0e+00 1425.2 882 82.4
CAN.G584.9 Capsicum annuum HOM05D000306 ORTHO05D005993 0.0e+00 1361.7 974 74.1
Peaxi162Scf00050g00628 Petunia axillaris HOM05D000306 ORTHO05D005993 0.0e+00 1245.0 781 81.8
Rhsim01G0006800 Rhododendron simsii HOM05D000306 ORTHO05D005993 0.0e+00 1144.4 875 67.5
Dinv41268 Davidia involucrata HOM05D000306 ORTHO05D005993 0.0e+00 1143.6 876 66.4
Actinidia04131 Actinidia chinensis HOM05D000306 ORTHO05D005993 0.0e+00 1140.6 849 68.6
MSTRG.19696 Avicennia marina HOM05D000306 ORTHO05D005993 0.0e+00 1127.5 864 65.2
Cfa013519 Carpinus fangiana HOM05D000306 ORTHO05D005993 0.0e+00 1092.4 857 65.6
GSVIVG01029151001 Vitis vinifera HOM05D000306 ORTHO05D005993 0.0e+00 1090.5 849 64.5
Migut.J01457 Erythranthe guttata HOM05D000306 ORTHO05D005993 0.0e+00 1084.3 871 63.1
QL02p097337 Quercus lobata HOM05D000306 ORTHO05D005993 0.0e+00 1083.2 858 64.3
CiPaw.07G190100 Carya illinoinensis HOM05D000306 ORTHO05D005993 0.0e+00 1077.4 844 64.7
Sc14g0001190 Simmondsia chinensis HOM05D000306 ORTHO05D005993 1.3e-309 1066.2 851 62.3
TAR625G0692 Trochodendron aralioides HOM05D000306 ORTHO05D005993 4.2e-308 1061.2 879 62.9
Prupe.1G089300 Prunus persica HOM05D000306 ORTHO05D005993 2.7e-307 1058.5 850 62.9
Manes.06G023800 Manihot esculenta HOM05D000306 ORTHO05D005993 1.7e-306 1055.8 865 62.7
Aqoxy7G03117 Aquilegia oxysepala HOM05D000306 ORTHO05D005993 3.9e-306 1054.7 855 62.0
SGA_v2.0_scaffold69G23277 Striga asiatica HOM05D000306 ORTHO05D005993 3.9e-306 1054.7 893 61.4
FvH4_4g09130 Fragaria vesca HOM05D000306 ORTHO05D005993 6.6e-306 1053.9 849 62.2
RcHm_v2.0_Chr4g0403051 Rosa chinensis HOM05D000306 ORTHO05D005993 1.9e-305 1052.4 858 61.7
Cpa.g.sc95.64 Carica papaya HOM05D000306 ORTHO05D005993 2.5e-305 1052.0 858 61.9
Lj9A687T82 Lonicera japonica HOM05D000306 ORTHO05D005993 7.4e-305 1050.4 823 66.2
MD13G1267300 Malus domestica HOM05D000306 ORTHO05D005993 1.3e-304 1049.7 855 61.8
FAN17G3079 Fragaria x ananassa HOM05D000306 ORTHO05D005993 6.9e-303 1043.9 858 61.0
FAN22G2400 Fragaria x ananassa HOM05D000306 ORTHO05D005993 1.5e-302 1042.7 858 61.1
DCAR_009913 Daucus carota HOM05D000306 ORTHO05D005993 5.8e-302 1040.8 839 63.2
Potri.006G170400 Populus trichocarpa HOM05D000306 ORTHO05D005993 5.8e-302 1040.8 843 62.5
PSO782G0277 Papaver somniferum HOM05D000306 ORTHO05D005993 2.2e-301 1038.9 851 62.0
HanXRQChr03g0068921 Helianthus annuus HOM05D000306 ORTHO05D005993 2.9e-301 1038.5 847 61.0
PSO063G2401 Papaver somniferum HOM05D000306 ORTHO05D005993 3.8e-301 1038.1 851 62.2
MELO3C017490.2 Cucumis melo HOM05D000306 ORTHO05D005993 1.9e-300 1035.8 862 61.7
Ciclev10007423m.g Citrus clementina HOM05D000306 ORTHO05D005993 2.1e-299 1032.3 868 60.4
CsaV3_1G031330 Cucumis sativus L. HOM05D000306 ORTHO05D005993 3.5e-299 1031.6 862 61.6
Gorai.013G246300 Gossypium raimondii HOM05D000306 ORTHO05D005993 7.9e-299 1030.4 847 62.8
Duzib150G0339 Durio zibethinus HOM05D000306 ORTHO05D005993 5.1e-298 1027.7 852 62.2
Gohir.A13G211900 Gossypium hirsutum HOM05D000306 ORTHO05D005993 8.7e-298 1026.9 848 62.6
CANSAT11G2131 Cannabis sativa HOM05D000306 ORTHO05D005993 1.1e-297 1026.5 865 61.4
Sed0027913 Sechium edule HOM05D000306 ORTHO05D005993 3.3e-297 1025.0 840 62.6
Lalb_Chr07g0180301 Lupinus albus HOM05D000306 ORTHO05D005993 2.1e-296 1022.3 854 61.2
BcaB08g36111 Brassica carinata HOM05D000306 ORTHO05D005993 4.8e-296 1021.1 881 59.1
Medtr4g128620 Medicago truncatula HOM05D000306 ORTHO05D005993 4.8e-296 1021.1 859 60.9
BolC3t13934H Brassica oleracea HOM05D000306 ORTHO05D005993 1.8e-295 1019.2 860 59.8
ClCG06G013170 Citrullus lanatus HOM05D000306 ORTHO05D005993 6.9e-295 1017.3 871 60.5
TWI34G1047 Tripterygium wilfordii HOM05D000306 ORTHO05D005993 2.6e-294 1015.4 855 61.3
MBI14_g17347_MAGBIO Magnolia biondii HOM05D000306 ORTHO05D005993 4.5e-294 1014.6 829 63.1
A03p12730 Brassica napus HOM05D000306 ORTHO05D005993 5.8e-294 1014.2 875 59.0
AL8G33620 Arabidopsis lyrata HOM05D000306 ORTHO05D005993 1.0e-293 1013.4 882 59.1
Thecc.09G168600 Theobroma cacao HOM05D000306 ORTHO05D005993 1.0e-293 1013.4 862 61.4
ECA240G1428 Erigeron canadensis HOM05D000306 ORTHO05D005993 1.3e-293 1013.1 853 60.5
Glyma.13G094700 Glycine max HOM05D000306 ORTHO05D005993 1.7e-293 1012.7 852 60.9
unitig_749.g14164 Utricularia gibba HOM05D000306 ORTHO05D005993 2.2e-293 1012.3 899 58.6
Lj4g0011507 Lotus japonicus HOM05D000306 ORTHO05D005993 4.9e-293 1011.1 855 60.5
Nn8g40500 Nelumbo nucifera HOM05D000306 ORTHO05D005993 1.1e-292 1010.0 861 60.2
PGR142G2544 Punica granatum HOM05D000306 ORTHO05D005993 1.9e-292 1009.2 847 60.7
Thhalv10012677m.g Eutrema salsugineum HOM05D000306 ORTHO05D005993 2.5e-292 1008.8 886 59.1
BcaC01g06481 Brassica carinata HOM05D000306 ORTHO05D005993 7.1e-292 1007.3 880 58.5
C03p14920 Brassica napus HOM05D000306 ORTHO05D005993 7.1e-292 1007.3 880 58.4
BcaC04g19951 Brassica carinata HOM05D000306 ORTHO05D005993 2.7e-291 1005.4 885 58.5
VMungo1215G0493 Vigna mungo HOM05D000306 ORTHO05D005993 4.6e-291 1004.6 858 60.4
Ca_21207_v3 Cicer arietinum L. HOM05D000306 ORTHO05D005993 6.0e-291 1004.2 857 60.6
BraA10t43578Z Brassica rapa HOM05D000306 ORTHO05D005993 1.3e-290 1003.0 861 59.0
BraA03t10584Z Brassica rapa HOM05D000306 ORTHO05D005993 1.8e-290 1002.7 843 60.4
AT5G57590 Arabidopsis thaliana HOM05D000306 ORTHO05D005993 3.9e-290 1001.5 845 60.5
A10p15010 Brassica napus HOM05D000306 ORTHO05D005993 3.9e-290 1001.5 861 59.1
Sabra06G0131200 Salix brachista HOM05D000306 ORTHO05D005993 8.7e-290 1000.3 843 60.9
Carub.0008s1810 Capsella rubella HOM05D000306 ORTHO05D005993 7.4e-289 997.3 879 58.7
Hma1.2p1_1022F.1_g248760 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 1.3e-288 996.5 741 67.9
Psat4g011120 Pisum sativum HOM05D000306 ORTHO05D005993 3.7e-288 995.0 857 59.5
Aa31LG3G13440 Aethionema arabicum HOM05D000306 ORTHO05D005993 4.8e-288 994.6 910 57.5
Phvul.003G147900 Phaseolus vulgaris HOM05D000306 ORTHO05D005993 8.2e-288 993.8 857 59.7
BolC9t57799H Brassica oleracea HOM05D000306 ORTHO05D005993 3.1e-287 991.9 885 57.7
arahy.Tifrunner.gnm1.ann1.MG2J04 Arachis hypogaea HOM05D000306 ORTHO05D005993 3.8e-285 984.9 873 59.3
ATR0580G146 Amborella trichopoda HOM05D000306 ORTHO05D005993 1.6e-283 979.5 854 60.0
Hund09018 Selenicereus undatus HOM05D000306 ORTHO05D005993 7.4e-281 970.7 834 61.0
AUR62040000 Chenopodium quinoa HOM05D000306 ORTHO05D005993 1.0e-277 960.3 849 58.2
AUR62040306 Chenopodium quinoa HOM05D000306 ORTHO05D005993 1.0e-277 960.3 822 59.5
arahy.Tifrunner.gnm1.ann1.6YA4AW Arachis hypogaea HOM05D000306 ORTHO05D005993 1.6e-275 953.0 865 58.3
Nitab4.5_0000937g0040 Nicotiana tabacum HOM05D000306 ORTHO05D005993 1.6e-275 953.0 517 91.7
Lsat_1_v5_gn_7_54301 Lactuca sativa HOM05D000306 ORTHO05D005993 3.6e-275 951.8 739 64.7
vmacro13109 Vaccinium macrocarpon HOM05D000306 ORTHO05D005993 5.7e-273 944.5 863 60.3
Atru.chr7.720 Acer truncatum HOM05D000306 ORTHO05D005993 5.9e-270 934.5 700 66.1
TPR.G5323 Trifolium pratense HOM05D000306 ORTHO05D005993 5.0e-269 931.4 719 63.7
CDE02G3177 Ceratophyllum demersum HOM05D000306 ORTHO05D005993 6.5e-269 931.0 816 58.7
C09p49460 Brassica napus HOM05D000306 ORTHO05D005993 1.2e-267 926.8 841 57.0
SHI02942 Sapria himalayana HOM05D000306 ORTHO05D005993 1.5e-265 919.8 847 55.7
Os08g0245400 Oryza sativa ssp. japonica HOM05D000306 ORTHO05D005993 6.3e-256 887.9 846 56.3
Zm00001eb412500 Zea mays HOM05D000306 ORTHO05D005993 1.5e-252 876.7 845 55.3
HPP92_013429 Vanilla planifolia HOM05D000306 ORTHO05D005993 1.3e-240 837.0 781 55.7
Mapoly0061s0099 Marchantia polymorpha HOM05D000306 ORTHO05D005993 4.9e-240 835.1 876 51.3
Sp6g19290 Schrenkiella parvula HOM05D000306 ORTHO05D005993 1.2e-238 830.5 857 51.8
Pp3c17_24020 Physcomitrium patens HOM05D000306 ORTHO05D005993 2.1e-235 819.7 880 48.6
SMO146G0375 Selaginella moellendorffii HOM05D000306 ORTHO05D005993 1.0e-234 817.4 857 50.1
Cc06_g13480 Coffea canephora HOM05D000306 ORTHO05D005993 1.5e-220 770.4 651 60.4
Ah.09g229770 Amaranthus hybridus HOM05D000306 ORTHO05D005993 6.8e-218 761.5 847 49.2
Eucgr.C00186 Eucalyptus grandis HOM05D000306 ORTHO05D005993 6.6e-213 745.0 578 64.5
Gohir.D13G216000 Gossypium hirsutum HOM05D000306 ORTHO05D005993 1.2e-206 724.2 562 64.8
Haze_22119 Corylus avellana HOM05D000306 ORTHO05D005993 2.1e-203 713.4 630 61.7
CBR_g30689 Chara braunii HOM05D000306 ORTHO05D005993 7.3e-196 688.3 907 43.4
Hma1.2p1_1423F.1_g282650 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 2.2e-192 676.8 541 66.4
Hma1.2p1_1022F.1_g248750 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 1.2e-182 644.4 522 66.1
BcaC05g28220 Brassica carinata HOM05D000306 ORTHO05D005993 2.7e-182 643.3 514 62.1
C05p43000 Brassica napus HOM05D000306 ORTHO05D005993 6.2e-179 632.1 537 60.1
BcaC08g43477 Brassica carinata HOM05D000306 ORTHO05D005993 1.2e-177 627.9 526 59.9
C06p08630 Brassica napus HOM05D000306 ORTHO05D005993 1.2e-177 627.9 526 59.9
BolC1t03728H Brassica oleracea HOM05D000306 ORTHO05D005993 1.4e-175 620.9 549 57.6
C01p37640 Brassica napus HOM05D000306 ORTHO05D005993 2.5e-175 620.2 533 58.5
EL10Ac8g18271 Beta vulgaris HOM05D000306 ORTHO05D005993 8.7e-173 611.7 667 51.0
MCO16G292 Micromonas commoda HOM05D000306 ORTHO05D005993 2.9e-168 596.7 905 40.1
SalBow6G4076 Salvia bowleyana HOM05D000306 ORTHO05D005993 3.1e-162 576.6 453 64.7
C09p62180 Brassica napus HOM05D000306 ORTHO05D005993 2.6e-161 573.5 514 58.0
SEGI_35821 Sequoiadendron giganteum HOM05D000306 ORTHO05D005993 3.8e-144 516.5 476 54.8
Cre06.g277200 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D005993 5.2e-125 453.0 1032 32.8
CARHR271360 Cardamine hirsuta HOM05D000306 ORTHO05D005993 1.1e-122 445.3 412 56.6
Cfa024735 Carpinus fangiana HOM05D000306 ORTHO05D005993 1.6e-110 404.8 904 32.1
BraA02t08063Z Brassica rapa HOM05D000306 ORTHO05D005993 1.1e-98 365.5 379 52.2
Cc06_g13470 Coffea canephora HOM05D000306 ORTHO05D005993 2.7e-97 360.9 218 77.1
BcaB01g04449 Brassica carinata HOM05D000306 ORTHO05D005993 1.3e-91 342.0 354 50.6
Haze_22118 Corylus avellana HOM05D000306 ORTHO05D005993 2.4e-90 337.8 244 67.2
Hma1.2p1_0863F.1_g230000 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 1.0e-80 305.8 309 57.6
CSS0003956 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 3.0e-72 277.7 204 69.1
Hma1.2p1_1423F.1_g282660 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 2.5e-58 231.5 318 43.1
Cfa016931 Carpinus fangiana HOM05D000306 ORTHO05D005993 1.9e-55 221.9 225 54.2
CSS0007035 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 6.1e-49 200.3 248 48.0
BcaC03g16218 Brassica carinata HOM05D000306 ORTHO05D005993 4.3e-47 194.1 130 73.1
QL02p097286 Quercus lobata HOM05D000306 ORTHO05D005993 2.4e-37 161.8 164 52.4
CSS0029448 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 1.5e-36 159.1 91 80.2
Peaxi162Scf00610g00360 Petunia axillaris HOM05D000306 ORTHO05D005993 6.5e-35 153.7 79 93.7
BcaC05g25358 Brassica carinata HOM05D000306 ORTHO05D005993 1.1e-34 152.9 111 66.7
SEGI_37083 Sequoiadendron giganteum HOM05D000306 ORTHO05D005993 4.7e-33 147.5 129 57.4
SEGI_33461 Sequoiadendron giganteum HOM05D000306 ORTHO05D005993 4.1e-29 134.4 75 81.3
MELO3C034648.2 Cucumis melo HOM05D000306 ORTHO05D005993 1.7e-27 129.0 91 67.0
BolC5t33030H Brassica oleracea HOM05D000306 ORTHO05D005993 1.2e-25 122.9 84 67.9
MELO3C032402.2 Cucumis melo HOM05D000306 ORTHO05D005993 1.6e-25 122.5 83 68.7
CSS0049760 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 3.6e-25 121.3 97 67.0
MELO3C020066.2 Cucumis melo HOM05D000306 ORTHO05D005993 4.7e-25 120.9 91 63.7
MELO3C033059.2 Cucumis melo HOM05D000306 ORTHO05D005993 6.1e-25 120.6 91 62.6
MELO3C033088.2 Cucumis melo HOM05D000306 ORTHO05D005993 6.1e-25 120.6 91 63.7
BolC2t10024H Brassica oleracea HOM05D000306 ORTHO05D005993 1.4e-24 119.4 84 69.0
arahy.Tifrunner.gnm1.ann1.F592RX Arachis hypogaea HOM05D000306 ORTHO05D007065 2.4e-21 108.6 97 57.7
arahy.Tifrunner.gnm1.ann1.JGW43E Arachis hypogaea HOM05D000306 ORTHO05D005993 2.4e-21 108.6 215 34.9
MELO3C031202.2 Cucumis melo HOM05D000306 ORTHO05D005993 1.6e-20 105.9 95 55.8
Oeu009845.1 Olea europaea HOM05D000306 ORTHO05D005993 6.5e-19 100.5 62 77.4
arahy.Tifrunner.gnm1.ann1.HK2K9G Arachis hypogaea HOM05D006158 ORTHO05D007065 6.1e-17 94.0 61 72.1
arahy.Tifrunner.gnm1.ann1.S0LUWR Arachis hypogaea HOM05D000306 ORTHO05D007065 2.3e-16 92.0 56 73.2
CSS0002850 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 1.7e-14 85.9 46 84.8
CSS0028890 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 1.7e-14 85.9 46 84.8
GSVIVG01015821001 Vitis vinifera HOM05D003092 ORTHO05D003977 9.1e-13 80.1 454 21.6
PGSC0003DMG400025228 Solanum tuberosum HOM05D003092 ORTHO05D003977 3.5e-12 78.2 316 23.7
Solyc08g014610.4 Solanum lycopersicum HOM05D003092 ORTHO05D003977 1.0e-11 76.6 316 23.7
Sopen08g005600 Solanum pennellii HOM05D003092 ORTHO05D003977 1.3e-11 76.3 316 23.4
HanXRQChr14g0446441 Helianthus annuus HOM05D003092 ORTHO05D003977 2.3e-11 75.5 315 23.5
TPR.G21260 Trifolium pratense HOM05D003092 ORTHO05D003977 1.1e-10 73.2 359 23.7
CSS0028993 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 2.1e-09 68.9 54 63.0
PGSC0003DMG400024281 Solanum tuberosum HOM05D003092 ORTHO05D003977 8.0e-09 67.0 123 30.1
Solyc12g006470.2 Solanum lycopersicum HOM05D003092 ORTHO05D003977 1.0e-08 66.6 118 28.8
Sopen12g002410 Solanum pennellii HOM05D003092 ORTHO05D003977 1.0e-08 66.6 118 28.8
arahy.Tifrunner.gnm1.ann1.EEM62Q Arachis hypogaea HOM05D002203 ORTHO05D007065 1.4e-08 66.2 38 81.6
Haze_26696 Corylus avellana HOM05D000826 ORTHO05D006448 1.8e-08 65.9 217 26.3
TPR.G16133 Trifolium pratense HOM05D003092 ORTHO05D003977 1.8e-08 65.9 363 22.0
Pp3s30_720 Physcomitrium patens HOM05D000826 ORTHO05D004603 3.0e-08 65.1 415 22.7
Sed0026801 Sechium edule HOM05D000826 ORTHO05D006448 8.9e-08 63.5 205 25.9
arahy.Tifrunner.gnm1.ann1.RYD0NS Arachis hypogaea HOM05D000129 ORTHO05D017460 2.0e-07 62.4 39 74.4
PRCOL_00000335 Prasinoderma coloniale HOM05D003092 ORTHO05D003977 2.0e-07 62.4 118 28.8
arahy.Tifrunner.gnm1.ann1.46R2K9 Arachis hypogaea HOM05D000306 ORTHO05D083075 5.7e-07 60.8 44 63.6
arahy.Tifrunner.gnm1.ann1.9D3V7N Arachis hypogaea HOM05D000129 ORTHO05D017460 5.7e-07 60.8 41 68.3
DCAR_007881 Daucus carota HOM05D000826 ORTHO05D006448 7.5e-07 60.5 211 24.2
Os03g0643300 Oryza sativa ssp. japonica HOM05D000826 ORTHO05D006448 7.5e-07 60.5 235 23.8
Mapoly0003s0017 Marchantia polymorpha HOM05D000826 ORTHO05D006448 9.8e-07 60.1 241 24.1
Sed0003877 Sechium edule HOM05D000826 ORTHO05D006448 1.3e-06 59.7 239 23.0
SEGI_29053 Sequoiadendron giganteum HOM05D000826 ORTHO05D006448 1.3e-06 59.7 207 24.6
MELO3C016238.2 Cucumis melo HOM05D003092 ORTHO05D003977 1.7e-06 59.3 225 21.8
CsaV3_4G007380 Cucumis sativus L. HOM05D003092 ORTHO05D003977 2.2e-06 58.9 225 21.8
CANSAT35G1538 Cannabis sativa HOM05D000826 ORTHO05D006448 2.8e-06 58.5 206 23.8
Pp3s30_700 Physcomitrium patens HOM05D000198 ORTHO05D018991 2.8e-06 58.5 109 32.1
Zm00001eb050460 Zea mays HOM05D000826 ORTHO05D006448 2.8e-06 58.5 211 26.1
SMO119G0079 Selaginella moellendorffii HOM05D000826 ORTHO05D006448 4.9e-06 57.8 207 26.1
CsaV3_1G004640 Cucumis sativus L. HOM05D000826 ORTHO05D006448 6.3e-06 57.4 229 22.3
Actinidia39586 Actinidia chinensis HOM05D000826 ORTHO05D006448 8.3e-06 57.0 211 24.6
MELO3C002752.2 Cucumis melo HOM05D000826 ORTHO05D006448 8.3e-06 57.0 205 22.9


User provided reference genes

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