Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000185g0170 Nicotiana tabacum HOM05D002840 ORTHO05D003088 4.4e-86 321.2 159 100.0
Nitab4.5_0006594g0060 Nicotiana tabacum HOM05D002840 ORTHO05D003088 1.8e-55 219.5 124 90.3
Solyc08g007180.3 Solanum lycopersicum HOM05D002840 ORTHO05D003088 6.6e-42 174.5 124 74.2
Sopen08g003130 Solanum pennellii HOM05D002840 ORTHO05D003088 1.6e-40 169.9 124 72.6
Peaxi162Scf00102g00088 Petunia axillaris HOM05D002840 ORTHO05D003088 5.2e-39 164.9 123 70.7
Nitab4.5_0000500g0220 Nicotiana tabacum HOM05D002840 ORTHO05D003088 4.4e-38 161.8 134 66.4
PGSC0003DMG400020492 Solanum tuberosum HOM05D002840 ORTHO05D003088 5.8e-38 161.4 126 69.0
PGSC0003DMG400026245 Solanum tuberosum HOM05D002840 ORTHO05D003088 1.3e-34 150.2 137 59.9
Nitab4.5_0009451g0010 Nicotiana tabacum HOM05D002840 ORTHO05D003088 3.9e-34 148.7 137 62.0
Solyc08g077880.3 Solanum lycopersicum HOM05D002840 ORTHO05D003088 6.6e-34 147.9 137 58.4
Sopen08g026390 Solanum pennellii HOM05D002840 ORTHO05D003088 4.3e-33 145.2 137 56.2
vmacro14123 Vaccinium macrocarpon HOM05D002840 ORTHO05D003088 2.2e-21 106.3 131 50.4
Actinidia10865 Actinidia chinensis HOM05D002840 ORTHO05D003088 2.9e-21 105.9 129 49.6
Rhsim07G0119300 Rhododendron simsii HOM05D002840 ORTHO05D003088 7.1e-20 101.3 124 48.4
Actinidia31493 Actinidia chinensis HOM05D002840 ORTHO05D003088 1.6e-19 100.1 132 47.7
Oeu017207.1 Olea europaea HOM05D002840 ORTHO05D003088 1.7e-18 96.7 130 48.5
DCAR_005585 Daucus carota HOM05D002840 ORTHO05D003088 6.6e-18 94.7 136 46.3
Lj8A276T43 Lonicera japonica HOM05D002840 ORTHO05D003088 4.3e-17 92.0 131 49.6
Hund11318 Selenicereus undatus HOM05D002840 ORTHO05D003088 4.3e-17 92.0 148 45.3
Sabra03G0054100 Salix brachista HOM05D002840 ORTHO05D003088 1.3e-16 90.5 130 43.8
MD04G1055800 Malus domestica HOM05D002840 ORTHO05D003088 2.1e-16 89.7 131 48.1
Gorai.004G192200 Gossypium raimondii HOM05D002840 ORTHO05D003088 3.6e-16 89.0 126 42.9
TAR375G0892 Trochodendron aralioides HOM05D002840 ORTHO05D003088 3.6e-16 89.0 133 47.4
FAN04G2804 Fragaria x ananassa HOM05D002840 ORTHO05D003088 4.8e-16 88.6 131 47.3
Gohir.A08G163300 Gossypium hirsutum HOM05D002840 ORTHO05D003088 6.2e-16 88.2 126 42.9
Gohir.D08G183100 Gossypium hirsutum HOM05D002840 ORTHO05D003088 6.2e-16 88.2 126 42.9
Cfa012324 Carpinus fangiana HOM05D002840 ORTHO05D003088 8.1e-16 87.8 136 45.6
Haze_08372 Corylus avellana HOM05D002840 ORTHO05D003088 8.1e-16 87.8 136 45.6
Eucgr.E00355 Eucalyptus grandis HOM05D002840 ORTHO05D003088 8.1e-16 87.8 135 46.7
Manes.01G088500 Manihot esculenta HOM05D002840 ORTHO05D003088 1.1e-15 87.4 127 44.1
Potri.003G083500 Populus trichocarpa HOM05D002840 ORTHO05D003088 1.4e-15 87.0 136 42.6
MD06G1047300 Malus domestica HOM05D002840 ORTHO05D003088 3.1e-15 85.9 131 45.0
GSVIVG01003693001 Vitis vinifera HOM05D002840 ORTHO05D003088 4.0e-15 85.5 123 46.3
CiPaw.11G072900 Carya illinoinensis HOM05D002840 ORTHO05D003088 6.9e-15 84.7 139 43.9
CSS0038832 Camellia sinensis var. sinensis HOM05D002840 ORTHO05D003088 9.0e-15 84.3 132 40.2
Ciclev10021868m.g Citrus clementina HOM05D002840 ORTHO05D003088 9.0e-15 84.3 125 43.2
COL.COLO4_07199 Corchorus olitorius HOM05D002840 ORTHO05D003088 1.5e-14 83.6 126 40.5
MELO3C013899.2 Cucumis melo HOM05D002840 ORTHO05D003088 1.5e-14 83.6 139 41.0
Manes.02G045000 Manihot esculenta HOM05D002840 ORTHO05D003088 1.5e-14 83.6 125 43.2
Duzib068G0843 Durio zibethinus HOM05D002840 ORTHO05D003088 2.0e-14 83.2 125 37.6
Gohir.A12G213000 Gossypium hirsutum HOM05D002840 ORTHO05D003088 2.0e-14 83.2 125 40.8
Potri.001G151300 Populus trichocarpa HOM05D002840 ORTHO05D003088 2.6e-14 82.8 129 41.1
CiPaw.12G055800 Carya illinoinensis HOM05D002840 ORTHO05D003088 4.4e-14 82.0 141 44.0
Atru.chr9.1211 Acer truncatum HOM05D002840 ORTHO05D003088 5.8e-14 81.6 124 39.5
ClCG10G002240 Citrullus lanatus HOM05D002840 ORTHO05D003088 5.8e-14 81.6 137 41.6
Gohir.D12G215500 Gossypium hirsutum HOM05D002840 ORTHO05D003088 5.8e-14 81.6 127 40.2
RcHm_v2.0_Chr7g0205511 Rosa chinensis HOM05D002840 ORTHO05D003088 5.8e-14 81.6 129 45.7
CANSAT21G1182 Cannabis sativa HOM05D002840 ORTHO05D003088 7.6e-14 81.3 132 41.7
Prupe.5G057100 Prunus persica HOM05D002840 ORTHO05D003088 9.9e-14 80.9 132 43.9
Sc01g0008000 Simmondsia chinensis HOM05D002840 ORTHO05D003088 1.7e-13 80.1 128 42.2
FvH4_5g20330 Fragaria vesca HOM05D002840 ORTHO05D003088 2.2e-13 79.7 132 44.7
Nn1g00765 Nelumbo nucifera HOM05D002840 ORTHO05D003088 2.2e-13 79.7 142 40.8
FAN18G0247 Fragaria x ananassa HOM05D002840 ORTHO05D003088 3.8e-13 79.0 129 45.0
Gorai.008G231100 Gossypium raimondii HOM05D002840 ORTHO05D003088 3.8e-13 79.0 127 40.2
FAN13G2006 Fragaria x ananassa HOM05D002840 ORTHO05D003088 4.9e-13 78.6 137 42.3
AUR62007164 Chenopodium quinoa HOM05D002840 ORTHO05D003088 6.4e-13 78.2 117 43.6
Duzib205G0050 Durio zibethinus HOM05D002840 ORTHO05D003088 6.4e-13 78.2 126 40.5
Nn6g33763 Nelumbo nucifera HOM05D002840 ORTHO05D003088 6.4e-13 78.2 138 38.4
Peaxi162Scf00301g00033 Petunia axillaris HOM05D002840 ORTHO05D003088 6.4e-13 78.2 111 46.8
Sed0026673 Sechium edule HOM05D002840 ORTHO05D003088 6.4e-13 78.2 136 41.2
TWI15G0197 Tripterygium wilfordii HOM05D002840 ORTHO05D003088 8.4e-13 77.8 126 39.7
Cpa.g.sc98.27 Carica papaya HOM05D002840 ORTHO05D003088 1.1e-12 77.4 132 43.9
FAN08G3190 Fragaria x ananassa HOM05D002840 ORTHO05D003088 1.1e-12 77.4 140 41.4
TAR636G1068 Trochodendron aralioides HOM05D002840 ORTHO05D003088 1.4e-12 77.0 130 36.9
CDE11G0044 Ceratophyllum demersum HOM05D002840 ORTHO05D003088 1.9e-12 76.6 122 42.6
unitig_699.g19768 Utricularia gibba HOM05D002121 ORTHO05D003088 1.9e-12 76.6 129 42.6
EL10Ac5g12275 Beta vulgaris HOM05D002840 ORTHO05D003088 2.4e-12 76.3 130 40.8
Lsat_1_v5_gn_6_95120 Lactuca sativa HOM05D002840 ORTHO05D003088 2.4e-12 76.3 124 39.5
Hma1.2p1_0840F.1_g226610 Hydrangea macrophylla HOM05D002840 ORTHO05D003088 3.2e-12 75.9 110 44.5
HanXRQChr03g0089741 Helianthus annuus HOM05D002840 ORTHO05D003088 7.1e-12 74.7 124 38.7
AUR62018842 Chenopodium quinoa HOM05D002840 ORTHO05D003088 9.3e-12 74.3 143 40.6
Migut.E00893 Erythranthe guttata HOM05D002840 ORTHO05D003088 1.2e-11 73.9 125 40.8
CDE02G1116 Ceratophyllum demersum HOM05D002840 ORTHO05D003088 1.6e-11 73.6 122 41.0
SalBow8G2480 Salvia bowleyana HOM05D002840 ORTHO05D003088 1.6e-11 73.6 122 40.2
Migut.E01635 Erythranthe guttata HOM05D002840 ORTHO05D003088 2.1e-11 73.2 125 40.0
MSTRG.1952 Avicennia marina HOM05D002840 ORTHO05D003088 2.7e-11 72.8 132 40.2
C09p29440 Brassica napus HOM05D002840 ORTHO05D003088 2.7e-11 72.8 127 42.5
Dinv28875 Davidia involucrata HOM05D002840 ORTHO05D003088 4.6e-11 72.0 134 38.8
Ah.12g054000 Amaranthus hybridus HOM05D002840 ORTHO05D003088 7.9e-11 71.2 139 36.7
Cc08_g11360 Coffea canephora HOM05D002840 ORTHO05D003088 7.9e-11 71.2 136 40.4
CsaV3_3G002290 Cucumis sativus L. HOM05D002840 ORTHO05D003088 1.0e-10 70.9 139 38.1
A09p22860 Brassica napus HOM05D002840 ORTHO05D003088 1.7e-10 70.1 127 40.9
C07p48870 Brassica napus HOM05D002840 ORTHO05D003088 2.3e-10 69.7 127 38.6
AL8G10970 Arabidopsis lyrata HOM05D002840 ORTHO05D003088 3.0e-10 69.3 129 38.0
MBI04_g13853_MAGBIO Magnolia biondii HOM05D002840 ORTHO05D003088 3.0e-10 69.3 122 34.4
QL12p008813 Quercus lobata HOM05D002840 ORTHO05D003088 3.0e-10 69.3 131 39.7
Aqoxy3G02656 Aquilegia oxysepala HOM05D002840 ORTHO05D003088 6.6e-10 68.2 151 37.1
BcaB07g30792 Brassica carinata HOM05D002840 ORTHO05D003088 6.6e-10 68.2 133 40.6
Sabra04G0063000 Salix brachista HOM05D002840 ORTHO05D003088 6.6e-10 68.2 132 39.4
Ah.07g199180 Amaranthus hybridus HOM05D002840 ORTHO05D003088 1.1e-09 67.4 136 36.8
BolC7t45395H Brassica oleracea HOM05D002840 ORTHO05D003088 1.1e-09 67.4 125 38.4
AT4G17600 Arabidopsis thaliana HOM05D002840 ORTHO05D003088 1.9e-09 66.6 135 38.5
BraA02t08099Z Brassica rapa HOM05D002840 ORTHO05D003088 2.5e-09 66.2 129 39.5
CAN.G572.7 Capsicum annuum HOM05D002840 ORTHO05D003088 2.5e-09 66.2 30 90.0
CARHR174280 Cardamine hirsuta HOM05D002840 ORTHO05D003088 3.3e-09 65.9 140 35.0
ECA233G4390 Erigeron canadensis HOM05D002840 ORTHO05D003088 4.3e-09 65.5 118 38.1
Lalb_Chr05g0220921 Lupinus albus HOM05D002840 ORTHO05D003088 4.3e-09 65.5 132 42.4
PSO063G1214 Papaver somniferum HOM05D002840 ORTHO05D003088 4.3e-09 65.5 143 37.8
Thecc.03G240800 Theobroma cacao HOM05D002840 ORTHO05D003088 4.3e-09 65.5 128 34.4
BcaC04g21645 Brassica carinata HOM05D002840 ORTHO05D003088 5.6e-09 65.1 122 37.7
BolC9t55808H Brassica oleracea HOM05D002840 ORTHO05D003088 5.6e-09 65.1 122 37.7
Carub.0008s0064 Capsella rubella HOM05D002840 ORTHO05D003088 5.6e-09 65.1 134 37.3
Os02g0125700 Oryza sativa ssp. japonica HOM05D002840 ORTHO05D003088 5.6e-09 65.1 116 36.2
SGA_v2.0_scaffold6G03162 Striga asiatica HOM05D002840 ORTHO05D003088 5.6e-09 65.1 130 40.0
unitig_52.g17215 Utricularia gibba HOM05D002840 ORTHO05D003088 7.3e-09 64.7 121 38.0
Mapoly0001s0043 Marchantia polymorpha HOM05D002840 ORTHO05D003088 9.6e-09 64.3 54 53.7
Oeu040672.1 Olea europaea HOM05D002840 ORTHO05D003088 9.6e-09 64.3 127 36.2
C02p48420 Brassica napus HOM05D002840 ORTHO05D003088 1.3e-08 63.9 128 42.2
BolC2t10872H Brassica oleracea HOM05D002840 ORTHO05D003088 1.3e-08 63.9 128 42.2
Carub.0007s2379 Capsella rubella HOM05D002840 ORTHO05D003088 1.3e-08 63.9 134 38.1
Aa31LG6G340 Aethionema arabicum HOM05D002840 ORTHO05D003088 2.1e-08 63.2 65 50.8
A02p30860 Brassica napus HOM05D002840 ORTHO05D003088 2.1e-08 63.2 127 40.9
C07p30810 Brassica napus HOM05D002840 ORTHO05D003088 2.1e-08 63.2 127 37.0
BolC7t43622H Brassica oleracea HOM05D002840 ORTHO05D003088 2.1e-08 63.2 127 37.0
BraA09t37888Z Brassica rapa HOM05D002840 ORTHO05D003088 2.1e-08 63.2 129 38.0
Migut.K01377 Erythranthe guttata HOM05D002840 ORTHO05D003088 2.1e-08 63.2 39 64.1
Lalb_Chr16g0386441 Lupinus albus HOM05D002840 ORTHO05D003088 2.1e-08 63.2 131 35.9
ECA240G0003 Erigeron canadensis HOM05D002840 ORTHO05D003088 2.8e-08 62.8 130 38.5
BcaC03g16940 Brassica carinata HOM05D002840 ORTHO05D003088 3.6e-08 62.4 117 39.3
A03p50540 Brassica napus HOM05D002840 ORTHO05D003088 3.6e-08 62.4 132 34.8
arahy.Tifrunner.gnm1.ann1.Z0I5FU Arachis hypogaea HOM05D002840 ORTHO05D003088 4.8e-08 62.0 106 38.7
BcaNung03455 Brassica carinata HOM05D002840 ORTHO05D003088 4.8e-08 62.0 129 35.7
BraA03t14143Z Brassica rapa HOM05D002840 ORTHO05D003088 4.8e-08 62.0 126 38.9
TWI60G0531 Tripterygium wilfordii HOM05D002840 ORTHO05D003088 4.8e-08 62.0 117 35.9
BcaC06g31415 Brassica carinata HOM05D002840 ORTHO05D003088 6.2e-08 61.6 127 37.8
THA.LOC104812817 Tarenaya hassleriana HOM05D002840 ORTHO05D003088 6.2e-08 61.6 130 36.9
AL7G37000 Arabidopsis lyrata HOM05D002840 ORTHO05D003088 8.1e-08 61.2 134 38.1
Sp7g16560 Schrenkiella parvula HOM05D002840 ORTHO05D003088 8.1e-08 61.2 135 36.3
CDE11G0936 Ceratophyllum demersum HOM05D002840 ORTHO05D003088 1.1e-07 60.8 50 60.0
Aa31sc58G50 Aethionema arabicum HOM05D002840 ORTHO05D003088 1.4e-07 60.5 83 37.3
arahy.Tifrunner.gnm1.ann1.ALKQ9T Arachis hypogaea HOM05D002840 ORTHO05D003088 1.4e-07 60.5 121 38.0
arahy.Tifrunner.gnm1.ann1.BV80JU Arachis hypogaea HOM05D002840 ORTHO05D003088 1.4e-07 60.5 121 38.0
VMungo0251G3117 Vigna mungo HOM05D002840 ORTHO05D003088 1.4e-07 60.5 129 35.7
AT5G47110 Arabidopsis thaliana HOM05D002840 ORTHO05D003088 1.8e-07 60.1 128 40.6
CARHR224320 Cardamine hirsuta HOM05D002840 ORTHO05D003088 1.8e-07 60.1 31 77.4
BcaC06g34285 Brassica carinata HOM05D002840 ORTHO05D003088 2.4e-07 59.7 127 36.2
PSO782G0833 Papaver somniferum HOM05D002840 ORTHO05D003088 2.4e-07 59.7 144 34.0
Phvul.003G225000 Phaseolus vulgaris HOM05D002840 ORTHO05D003088 2.4e-07 59.7 127 33.1
A06p45280 Brassica napus HOM05D001479 ORTHO05D003088 3.1e-07 59.3 138 38.4
CDE04G2971 Ceratophyllum demersum HOM05D002840 ORTHO05D003088 3.1e-07 59.3 123 37.4
HanXRQChr13g0418271 Helianthus annuus HOM05D002840 ORTHO05D003088 3.1e-07 59.3 124 33.9
arahy.Tifrunner.gnm1.ann1.YIXS33 Arachis hypogaea HOM05D002840 ORTHO05D003088 4.0e-07 58.9 54 53.7
Oeu040673.1 Olea europaea HOM05D002840 ORTHO05D003088 4.0e-07 58.9 127 33.1
BraA06t27400Z Brassica rapa HOM05D002840 ORTHO05D003088 5.3e-07 58.5 137 37.2
Thhalv10000997m.g Eutrema salsugineum HOM05D002840 ORTHO05D003088 5.3e-07 58.5 52 53.8
Psat4g075640 Pisum sativum HOM05D002840 ORTHO05D003088 5.3e-07 58.5 123 36.6
Sp2g11920 Schrenkiella parvula HOM05D002840 ORTHO05D003088 5.3e-07 58.5 139 36.0
Dinv25133 Davidia involucrata HOM05D002840 ORTHO05D003088 9.0e-07 57.8 30 76.7
BcaC06g33557 Brassica carinata HOM05D002840 ORTHO05D003088 1.5e-06 57.0 120 35.8
BcaNung06052 Brassica carinata HOM05D002840 ORTHO05D003088 1.5e-06 57.0 120 35.8
CSS0003465 Camellia sinensis var. sinensis HOM05D002840 ORTHO05D003088 2.0e-06 56.6 37 64.9
Ca_22013_v3 Cicer arietinum L. HOM05D002840 ORTHO05D003088 2.0e-06 56.6 94 36.2
Atru.chr6.1975 Acer truncatum HOM05D002840 ORTHO05D003088 3.4e-06 55.8 37 62.2
Gohir.A07G044700 Gossypium hirsutum HOM05D002840 ORTHO05D003088 4.5e-06 55.5 92 33.7
Lj4g0023884 Lotus japonicus HOM05D002840 ORTHO05D003088 4.5e-06 55.5 130 31.5
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.5e-06 55.5 32 78.1
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 4.5e-06 55.5 32 78.1
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 4.5e-06 55.5 32 78.1
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 4.5e-06 55.5 32 78.1
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 4.5e-06 55.5 32 78.1
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 4.5e-06 55.5 32 78.1
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 4.5e-06 55.5 32 78.1
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 4.5e-06 55.5 32 78.1
HPP92_014883 Vanilla planifolia HOM05D002840 ORTHO05D003088 7.6e-06 54.7 123 33.3
Glyma.17G147900 Glycine max HOM05D002840 ORTHO05D003088 9.9e-06 54.3 133 35.3
PGR042G0534 Punica granatum HOM05D002840 ORTHO05D003088 9.9e-06 54.3 125 36.0


User provided reference genes

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