Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000175g0140 Nicotiana tabacum HOM05D004419 ORTHO05D005480 3.2e-212 741.5 371 100.0
Nitab4.5_0003250g0020 Nicotiana tabacum HOM05D004419 ORTHO05D005480 6.0e-195 684.1 419 84.2
Solyc01g006680.4 Solanum lycopersicum HOM05D004419 ORTHO05D005480 4.6e-179 631.3 399 80.7
PGSC0003DMG400021346 Solanum tuberosum HOM05D004419 ORTHO05D005480 7.3e-177 624.0 420 78.1
Cc01_g04260 Coffea canephora HOM05D004419 ORTHO05D005480 1.0e-146 523.9 421 63.4
Peaxi162Scf00559g00213 Petunia axillaris HOM05D004419 ORTHO05D005480 2.5e-145 519.2 338 78.7
Dinv36300 Davidia involucrata HOM05D004419 ORTHO05D005480 2.5e-140 502.7 397 64.0
Migut.D00562 Erythranthe guttata HOM05D004419 ORTHO05D005480 1.5e-134 483.4 402 61.4
Lj3g0003248 Lotus japonicus HOM05D004419 ORTHO05D005480 2.9e-133 479.2 417 60.2
Oeu024454.3 Olea europaea HOM05D004419 ORTHO05D005480 2.9e-133 479.2 447 57.0
Glyma.12G055000 Glycine max HOM05D004419 ORTHO05D005480 5.0e-133 478.4 415 60.5
Potri.001G016200 Populus trichocarpa HOM05D004419 ORTHO05D005480 5.0e-133 478.4 420 59.8
Nn7g36075 Nelumbo nucifera HOM05D004419 ORTHO05D005480 1.1e-132 477.2 402 60.9
TPR.G13661 Trifolium pratense HOM05D004419 ORTHO05D005633 5.5e-132 474.9 399 61.2
TWI60G0085 Tripterygium wilfordii HOM05D004419 ORTHO05D005480 5.5e-132 474.9 410 59.8
RcHm_v2.0_Chr5g0078171 Rosa chinensis HOM05D004419 ORTHO05D005480 9.4e-132 474.2 395 60.5
FvH4_3g43600 Fragaria vesca HOM05D004419 ORTHO05D005480 1.2e-131 473.8 395 61.0
Eucgr.J00814 Eucalyptus grandis HOM05D004419 ORTHO05D005480 2.7e-131 472.6 402 59.0
Hma1.2p1_0143F.1_g064490 Hydrangea macrophylla HOM05D004419 ORTHO05D005480 3.6e-131 472.2 417 60.0
Phvul.011G056900 Phaseolus vulgaris HOM05D004419 ORTHO05D005480 3.6e-131 472.2 412 59.7
Glyma.11G130600 Glycine max HOM05D004419 ORTHO05D005480 4.7e-131 471.9 398 61.8
Cfa009704 Carpinus fangiana HOM05D004419 ORTHO05D005480 1.0e-130 470.7 399 61.2
Ca_20582_v3 Cicer arietinum L. HOM05D004419 ORTHO05D005480 1.0e-130 470.7 398 61.1
FAN21G0217 Fragaria x ananassa HOM05D004419 ORTHO05D005480 1.4e-130 470.3 416 58.9
DCAR_002041 Daucus carota HOM05D004419 ORTHO05D005480 5.1e-130 468.4 384 63.3
CSS0021936 Camellia sinensis var. sinensis HOM05D004419 ORTHO05D005480 6.7e-130 468.0 409 58.2
Lsat_1_v5_gn_6_50061 Lactuca sativa HOM05D004419 ORTHO05D005480 6.7e-130 468.0 396 59.8
CANSAT54G1224 Cannabis sativa HOM05D004419 ORTHO05D005480 8.8e-130 467.6 421 57.7
Lalb_Chr01g0003291 Lupinus albus HOM05D004419 ORTHO05D005480 8.8e-130 467.6 405 59.5
arahy.Tifrunner.gnm1.ann1.LD2WL8 Arachis hypogaea HOM05D004419 ORTHO05D005480 1.5e-129 466.8 409 59.4
QL01p006124 Quercus lobata HOM05D004419 ORTHO05D005480 2.0e-129 466.5 400 60.2
FAN11G1953 Fragaria x ananassa HOM05D004419 ORTHO05D005480 2.6e-129 466.1 403 59.6
Medtr4g066020 Medicago truncatula HOM05D004419 ORTHO05D005480 2.6e-129 466.1 410 60.0
Thecc.09G224700 Theobroma cacao HOM05D004419 ORTHO05D005480 7.4e-129 464.5 404 60.4
TAR623G0092 Trochodendron aralioides HOM05D004419 ORTHO05D005480 7.4e-129 464.5 400 58.5
Atru.chr3.2519_Atru.chr3.2520 Acer truncatum HOM05D004419 ORTHO05D005480 9.7e-129 464.2 395 60.5
Haze_23057 Corylus avellana HOM05D004419 ORTHO05D005480 4.8e-128 461.8 442 56.3
PSO384G0662 Papaver somniferum HOM05D004419 ORTHO05D005480 4.8e-128 461.8 397 59.4
Prupe.6G015700 Prunus persica HOM05D004419 ORTHO05D005480 8.2e-128 461.1 403 58.6
vmacro12711 Vaccinium macrocarpon HOM05D004419 ORTHO05D005480 1.8e-127 459.9 442 55.4
HanXRQChr02g0056491 Helianthus annuus HOM05D004419 ORTHO05D005480 2.4e-127 459.5 404 58.4
ECA233G0260 Erigeron canadensis HOM05D004419 ORTHO05D005480 3.1e-127 459.1 405 58.0
Gohir.A06G108900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 3.1e-127 459.1 400 60.5
MD03G1020700 Malus domestica HOM05D004419 ORTHO05D005480 5.3e-127 458.4 402 58.5
Haze_23052 Corylus avellana HOM05D004419 ORTHO05D005480 1.6e-126 456.8 427 56.9
AT3G20810 Arabidopsis thaliana HOM05D004419 ORTHO05D005480 3.5e-126 455.7 412 57.5
Ciclev10015488m.g Citrus clementina HOM05D004419 ORTHO05D005480 7.7e-126 454.5 395 60.0
BcaB06g26154 Brassica carinata HOM05D004419 ORTHO05D005480 5.0e-125 451.8 408 58.1
Carub.0003s2077 Capsella rubella HOM05D004419 ORTHO05D005480 6.5e-125 451.4 415 56.4
Duzib168G0032 Durio zibethinus HOM05D004419 ORTHO05D005480 8.5e-125 451.1 418 58.1
FAN25G0488 Fragaria x ananassa HOM05D004419 ORTHO05D005480 8.5e-125 451.1 437 54.0
Gohir.D06G112900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 2.5e-124 449.5 419 58.0
A05p27970 Brassica napus HOM05D004419 ORTHO05D005480 3.2e-124 449.1 403 56.6
Aa31LG8G7630 Aethionema arabicum HOM05D004419 ORTHO05D005480 9.4e-124 447.6 419 57.5
AL3G34730 Arabidopsis lyrata HOM05D004419 ORTHO05D005480 9.4e-124 447.6 425 55.3
MELO3C015209.2 Cucumis melo HOM05D004419 ORTHO05D005480 9.4e-124 447.6 397 57.9
BcaC05g28276 Brassica carinata HOM05D004419 ORTHO05D005480 1.6e-123 446.8 403 56.6
C05p43260 Brassica napus HOM05D004419 ORTHO05D005480 1.6e-123 446.8 403 56.6
CsaV3_1G042600 Cucumis sativus L. HOM05D004419 ORTHO05D005480 1.6e-123 446.8 397 57.2
FAN16G1269 Fragaria x ananassa HOM05D004419 ORTHO05D005480 8.0e-123 444.5 398 58.0
THA.LOC104816908 Tarenaya hassleriana HOM05D004419 ORTHO05D005480 1.0e-122 444.1 401 56.6
BraA05t21680Z Brassica rapa HOM05D004419 ORTHO05D005480 1.8e-122 443.4 411 55.5
BolC5t33056H Brassica oleracea HOM05D004419 ORTHO05D005480 6.7e-122 441.4 411 55.5
CAN.G388.54 Capsicum annuum HOM05D004419 ORTHO05D005480 6.7e-122 441.4 368 64.1
BcaC05g28278 Brassica carinata HOM05D004419 ORTHO05D005480 2.2e-120 436.4 399 57.9
Sed0001509 Sechium edule HOM05D004419 ORTHO05D005480 5.3e-119 431.8 395 58.0
arahy.Tifrunner.gnm1.ann1.6DX332 Arachis hypogaea HOM05D004419 ORTHO05D005480 4.5e-118 428.7 453 52.3
Hund22076 Selenicereus undatus HOM05D004419 ORTHO05D005480 4.5e-118 428.7 425 53.4
Ah.04g161770 Amaranthus hybridus HOM05D004419 ORTHO05D005480 2.9e-117 426.0 395 54.4
PGR119G1205 Punica granatum HOM05D004419 ORTHO05D005480 2.9e-117 426.0 368 57.9
EL10Ac4g10313 Beta vulgaris HOM05D004419 ORTHO05D005480 4.2e-116 422.2 424 52.4
Manes.06G168600 Manihot esculenta HOM05D004419 ORTHO05D005480 4.7e-115 418.7 380 59.7
Aqoxy2G00106 Aquilegia oxysepala HOM05D004419 ORTHO05D005480 8.0e-115 417.9 401 54.1
SGA_v2.0_scaffold1G00802 Striga asiatica HOM05D004419 ORTHO05D005480 7.5e-113 411.4 419 52.5
CiPaw.13G165000 Carya illinoinensis HOM05D004419 ORTHO05D005480 1.3e-112 410.6 367 59.4
Sp3g18830 Schrenkiella parvula HOM05D004419 ORTHO05D005480 6.3e-112 408.3 414 53.1
Ah.06g193530 Amaranthus hybridus HOM05D004419 ORTHO05D005480 1.2e-110 404.1 390 53.1
VMungo1127G0574 Vigna mungo HOM05D004419 ORTHO05D005480 5.9e-110 401.7 419 53.2
AUR62000082 Chenopodium quinoa HOM05D004419 ORTHO05D005480 1.0e-109 401.0 369 56.6
HanXRQChr13g0403921 Helianthus annuus HOM05D004419 ORTHO05D005480 2.9e-109 399.4 402 53.0
AUR62019254 Chenopodium quinoa HOM05D004419 ORTHO05D005480 4.2e-108 395.6 373 55.5
AUR62043680 Chenopodium quinoa HOM05D004419 ORTHO05D005480 4.2e-108 395.6 373 55.5
SHI30509 Sapria himalayana HOM05D004419 ORTHO05D005480 1.0e-106 391.0 402 52.2
Duzib150G1622 Durio zibethinus HOM05D004419 ORTHO05D005480 1.2e-105 387.5 372 57.5
Lj2C654G2 Lonicera japonica HOM05D004419 ORTHO05D005480 1.3e-104 384.0 318 60.7
HPP92_017970 Vanilla planifolia HOM05D004419 ORTHO05D005480 2.2e-104 383.3 392 52.6
MSTRG.21407 Avicennia marina HOM05D004419 ORTHO05D005480 4.9e-104 382.1 348 58.0
Gorai.010G128800 Gossypium raimondii HOM05D004419 ORTHO05D005480 8.3e-104 381.3 374 56.4
MBI01_g05106_MAGBIO Magnolia biondii HOM05D004419 ORTHO05D005480 9.2e-103 377.9 395 52.4
Os09g0489200 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 9.2e-103 377.9 397 50.4
ATR0605G084 Amborella trichopoda HOM05D004419 ORTHO05D005480 1.1e-100 370.9 383 50.4
Psat7g213880 Pisum sativum HOM05D004419 ORTHO05D005480 2.5e-100 369.8 341 57.8
Os08g0508500 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 1.4e-98 364.0 390 51.5
Rhsim01G0189600 Rhododendron simsii HOM05D004419 ORTHO05D005480 4.0e-98 362.5 345 55.1
Lalb_Chr19g0138231 Lupinus albus HOM05D004419 ORTHO05D005480 1.4e-90 337.4 270 63.7
GSVIVG01025322001 Vitis vinifera HOM05D004419 ORTHO05D005480 1.3e-88 330.9 308 57.5
Manes.14G013900 Manihot esculenta HOM05D004419 ORTHO05D005480 1.7e-88 330.5 282 62.4
ClCG03G013430 Citrullus lanatus HOM05D004419 ORTHO05D005480 3.9e-85 319.3 273 60.4
Thhalv10021129m.g Eutrema salsugineum HOM05D004419 ORTHO05D005480 8.6e-85 318.2 264 59.8
Sabra01G0011400 Salix brachista HOM05D004419 ORTHO05D005480 1.9e-84 317.0 347 50.4
Sc16g0011690 Simmondsia chinensis HOM05D004419 ORTHO05D005480 1.9e-84 317.0 273 60.4
Pp3c17_10850 Physcomitrium patens HOM05D004419 ORTHO05D005480 6.8e-82 308.5 394 42.4
Sopen01g002670 Solanum pennellii HOM05D004419 ORTHO05D005480 2.6e-81 306.6 209 74.6
Cpa.g.sc84.102 Carica papaya HOM05D004419 ORTHO05D005480 5.4e-79 298.9 249 61.8
CDE05G0158 Ceratophyllum demersum HOM05D004419 ORTHO05D005480 2.1e-78 297.0 382 44.2
Mapoly0036s0149 Marchantia polymorpha HOM05D004419 ORTHO05D005480 3.5e-78 296.2 386 42.7
SMO364G0845 Selaginella moellendorffii HOM05D004419 ORTHO05D005480 1.2e-73 281.2 393 41.0
MBI01_g41296_MAGBIO Magnolia biondii HOM05D004419 ORTHO05D005480 2.8e-67 260.0 157 75.8
RcHm_v2.0_Chr5g0078291 Rosa chinensis HOM05D004419 ORTHO05D005480 1.5e-65 254.2 206 62.6
CARHR096650 Cardamine hirsuta HOM05D004419 ORTHO05D005480 5.8e-65 252.3 233 56.2
Actinidia39384 Actinidia chinensis HOM05D004419 ORTHO05D005480 1.3e-64 251.1 206 61.2
MD11G1022000 Malus domestica HOM05D004419 ORTHO05D005480 1.0e-61 241.5 324 44.8
AagrBONN_evm.TU.Sc2ySwM_117.3437 Anthoceros agrestis HOM05D004419 ORTHO05D005480 3.9e-53 213.0 227 47.6
BcaC05g28277 Brassica carinata HOM05D004419 ORTHO05D005480 1.4e-50 204.5 299 42.8
SEGI_22299 Sequoiadendron giganteum HOM05D004419 ORTHO05D005480 1.0e-45 188.3 291 39.5
CBR_g68529 Chara braunii HOM05D004419 ORTHO05D005480 6.9e-42 175.6 255 36.5
QL01p016023 Quercus lobata HOM05D004419 ORTHO05D005480 3.2e-39 166.8 116 69.0
ClCG03G013420 Citrullus lanatus HOM05D004419 ORTHO05D005480 2.7e-38 163.7 88 84.1
PRCOL_00002632 Prasinoderma coloniale HOM05D004419 ORTHO05D005480 2.7e-30 137.1 431 29.0
FvH4_3g43632 Fragaria vesca HOM05D004419 ORTHO05D005480 3.6e-30 136.7 94 73.4
CAN.G103.12 Capsicum annuum HOM05D004419 ORTHO05D005480 5.7e-28 129.4 74 78.4
CAN.G1385.1 Capsicum annuum HOM05D004419 ORTHO05D005480 1.1e-26 125.2 83 72.3
MD11G1022300 Malus domestica HOM05D004419 ORTHO05D005480 2.4e-26 124.0 109 57.8
Lalb_Chr19g0138221 Lupinus albus HOM05D004419 ORTHO05D005480 5.9e-25 119.4 65 81.5
RcHm_v2.0_Chr5g0076021 Rosa chinensis HOM05D004419 ORTHO05D005480 1.0e-24 118.6 61 85.2
RcHm_v2.0_Chr5g0078281 Rosa chinensis HOM05D004419 ORTHO05D005480 7.2e-23 112.5 141 41.1
RcHm_v2.0_Chr5g0078201 Rosa chinensis HOM05D004419 ORTHO05D005480 9.4e-23 112.1 66 80.3
MELO3C025411.2 Cucumis melo HOM05D004419 ORTHO05D005480 1.2e-22 111.7 74 70.3
Actinidia06325 Actinidia chinensis HOM05D004419 ORTHO05D005480 3.9e-21 106.7 90 58.9
Cre11.g467768 Chlamydomonas reinhardtii HOM05D004419 ORTHO05D005480 1.1e-20 105.1 391 26.1
FAN11G3211 Fragaria x ananassa HOM05D004419 ORTHO05D005480 1.5e-20 104.8 115 52.2
MCO11G675 Micromonas commoda HOM05D004419 ORTHO05D005480 1.5e-20 104.8 241 28.6
CARHR096670 Cardamine hirsuta HOM05D004419 ORTHO05D005480 5.7e-20 102.8 51 86.3
MCO01G020 Micromonas commoda HOM05D004419 ORTHO05D005480 7.4e-20 102.4 226 29.6
C03p51290 Brassica napus HOM05D004419 ORTHO05D005480 2.4e-18 97.4 60 70.0
Pp3c2_7150 Physcomitrium patens HOM05D004419 ORTHO05D005480 3.4e-17 93.6 98 44.9
Pp3c1_28300 Physcomitrium patens HOM05D004419 ORTHO05D005480 4.5e-17 93.2 102 46.1
MELO3C027435.2 Cucumis melo HOM05D004419 ORTHO05D005480 1.7e-16 91.3 56 67.9
MCO01G585 Micromonas commoda HOM05D004419 ORTHO05D005480 5.0e-16 89.7 269 26.8
Pp3c14_10900 Physcomitrium patens HOM05D004419 ORTHO05D005480 3.2e-15 87.0 95 43.2
Pp3c5_1010 Physcomitrium patens HOM05D004419 ORTHO05D005480 9.4e-15 85.5 97 46.4
PRCOL_00006664 Prasinoderma coloniale HOM05D004419 ORTHO05D005480 1.0e-13 82.0 246 26.8
CARHR096660 Cardamine hirsuta HOM05D004419 ORTHO05D005480 1.5e-12 78.2 48 68.8
vmacro19282 Vaccinium macrocarpon HOM05D004419 ORTHO05D005480 9.7e-12 75.5 72 50.0
Cfa024691 Carpinus fangiana HOM05D003208 ORTHO05D005480 2.2e-11 74.3 287 24.4
DCAR_000095 Daucus carota HOM05D004419 ORTHO05D005480 1.1e-10 72.0 72 59.7
MCO01G088 Micromonas commoda HOM05D004419 ORTHO05D005480 2.6e-09 67.4 90 42.2
Ca_27145_v3 Cicer arietinum L. HOM05D004419 ORTHO05D005480 3.5e-09 67.0 46 67.4
Nn2g15536 Nelumbo nucifera HOM05D004419 ORTHO05D005480 3.5e-09 67.0 67 58.2
Actinidia06326 Actinidia chinensis HOM05D004419 ORTHO05D005480 5.9e-09 66.2 51 62.7
SEGI_06744 Sequoiadendron giganteum HOM05D004419 ORTHO05D005480 5.9e-09 66.2 68 51.5
HanXRQChr16g0505821 Helianthus annuus HOM05D004419 ORTHO05D005480 1.0e-08 65.5 45 51.1
PRCOL_00002851 Prasinoderma coloniale HOM05D004419 ORTHO05D005480 1.0e-08 65.5 92 39.1
Medtr1g071300 Medicago truncatula HOM05D004978 ORTHO05D005621 1.6e-06 58.2 101 39.6
MCO12G327 Micromonas commoda HOM05D004419 ORTHO05D005480 3.6e-06 57.0 111 34.2


User provided reference genes

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